Wall clock time and date at job start Tue Mar 31 2020 00:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47196 * 270.00230 * 3 2 1 5 5 H 1.48502 * 109.47265 * 30.00556 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00194 * 3 2 1 7 7 C 1.37872 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00261 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99956 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40354 * 293.53931 * 9 7 2 11 11 O 1.42107 * 106.40384 * 66.46133 * 9 7 2 12 12 N 1.65607 * 107.21942 * 179.97438 * 9 7 2 13 13 C 1.47599 * 118.64212 * 269.72880 * 12 9 7 14 14 C 1.53598 * 112.33991 * 222.03682 * 13 12 9 15 15 C 1.50883 * 109.95465 * 40.83739 * 14 13 12 16 16 C 1.52565 * 109.35832 * 268.02471 * 15 14 13 17 17 C 1.47096 * 114.32673 * 85.01202 * 16 15 14 18 18 O 1.42897 * 109.32733 * 57.45658 * 17 16 15 19 19 C 1.53001 * 109.18701 * 177.02828 * 17 16 15 20 20 N 1.46894 * 109.47023 * 305.77956 * 19 17 16 21 21 C 1.44578 * 118.64278 * 90.00047 * 12 9 7 22 22 H 0.97000 * 119.99617 * 359.97438 * 1 2 3 23 23 H 1.09000 * 108.94996 * 342.84096 * 13 12 9 24 24 H 1.09004 * 108.94550 * 101.46639 * 13 12 9 25 25 H 1.08999 * 109.51302 * 280.64183 * 14 13 12 26 26 H 1.09006 * 109.26103 * 160.87804 * 14 13 12 27 27 H 1.09002 * 109.49002 * 148.05797 * 15 14 13 28 28 H 1.08994 * 109.48542 * 27.98993 * 15 14 13 29 29 H 1.09007 * 108.51318 * 323.75443 * 16 15 14 30 30 H 1.09003 * 108.39032 * 206.17369 * 16 15 14 31 31 H 0.96694 * 114.00015 * 59.14016 * 18 17 16 32 32 H 1.08998 * 109.47231 * 65.77787 * 19 17 16 33 33 H 1.09006 * 109.46598 * 185.77980 * 19 17 16 34 34 H 1.00894 * 111.00104 * 180.02562 * 20 19 17 35 35 H 1.00903 * 111.00289 * 303.95807 * 20 19 17 36 36 H 1.09000 * 109.44990 * 209.29088 * 21 12 9 37 37 H 1.09001 * 109.44930 * 329.23827 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7199 -0.0005 10 8 0.4519 -2.7955 1.2494 11 8 0.4509 -2.7950 -1.2501 12 7 2.2483 -3.9354 -0.0019 13 6 2.7233 -4.4583 -1.2979 14 6 2.8441 -5.9895 -1.3008 15 6 1.6690 -6.6001 -0.5778 16 6 2.0256 -6.7946 0.8928 17 6 1.8074 -5.6061 1.7316 18 8 0.4402 -5.2021 1.6329 19 6 2.1297 -5.9516 3.1868 20 7 1.3519 -7.1293 3.5943 21 6 2.7200 -4.4447 1.2663 22 1 -0.4849 0.8401 0.0004 23 1 2.0249 -4.1570 -2.0786 24 1 3.7014 -4.0291 -1.5156 25 1 3.7677 -6.2828 -0.8017 26 1 2.8605 -6.3470 -2.3304 27 1 1.4286 -7.5649 -1.0244 28 1 0.8079 -5.9368 -0.6585 29 1 3.0762 -7.0774 0.9598 30 1 1.4225 -7.6123 1.2877 31 1 -0.1912 -5.8806 1.9084 32 1 3.1937 -6.1683 3.2817 33 1 1.8723 -5.1071 3.8262 34 1 1.5469 -7.3775 4.5525 35 1 0.3644 -6.9766 3.4544 36 1 3.7415 -4.8082 1.1542 37 1 2.6981 -3.6467 2.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238944746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:31 Heat of formation + Delta-G solvation = -135.945381 kcal Electronic energy + Delta-G solvation = -22024.538303 eV Core-core repulsion = 18735.209874 eV Total energy + Delta-G solvation = -3289.328430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.46475 -35.90712 -34.94690 -33.65229 -33.46690 -33.02832 -32.71748 -30.72401 -26.49094 -25.99931 -25.02565 -22.98435 -20.09621 -19.93602 -18.57268 -17.07741 -16.73809 -16.30996 -15.88290 -15.45278 -14.91897 -14.47441 -14.18172 -13.85618 -13.56904 -13.49189 -13.09650 -12.76238 -12.60394 -12.14180 -11.86763 -11.78173 -11.50182 -11.16960 -11.11538 -10.86918 -10.57468 -10.53179 -10.43525 -10.11656 -9.95520 -9.82698 -9.73878 -9.48351 -9.15810 -8.70341 -8.67821 -8.00293 -6.59450 -5.20861 2.49317 3.10530 3.17117 3.23848 4.12161 4.40572 4.55872 4.73217 4.82395 4.96929 5.12485 5.23837 5.34061 5.51110 5.57505 5.70030 5.78935 5.94746 5.96141 6.04560 6.12845 6.22641 6.25153 6.37333 6.42548 6.52412 6.58885 6.70834 6.77763 6.94614 7.02200 7.31870 7.41271 7.85828 8.06837 8.20210 8.98945 10.33168 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.007077 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.555398 B = 3955.262591 C = 4354.511833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.134 3.866 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.031 5.031 8 H 0.097 0.903 9 S 2.721 3.279 10 O -0.976 6.976 11 O -1.012 7.012 12 N -0.996 5.996 13 C 0.117 3.883 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.132 4.132 17 C 0.114 3.886 18 O -0.522 6.522 19 C 0.033 3.967 20 N -0.848 5.848 21 C 0.151 3.849 22 H 0.289 0.711 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.356 0.644 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.340 0.660 35 H 0.338 0.662 36 H 0.075 0.925 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 -12.059 3.517 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.188 1.188 7 C -1.163 5.163 8 H 0.116 0.884 9 S 2.820 3.180 10 O -0.966 6.966 11 O -1.003 7.003 12 N -0.829 5.829 13 C -0.009 4.009 14 C -0.164 4.164 15 C -0.154 4.154 16 C -0.170 4.170 17 C 0.070 3.930 18 O -0.325 6.325 19 C -0.098 4.098 20 N -0.378 5.378 21 C 0.023 3.977 22 H 0.099 0.901 23 H 0.110 0.890 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.202 0.798 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.094 0.906 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.732 -11.939 2.710 13.518 hybrid contribution 0.482 1.281 0.966 1.675 sum 6.214 -10.658 3.676 12.873 Atomic orbital electron populations 1.69912 1.06717 1.30436 1.40535 1.24722 0.94402 1.00615 0.88638 0.86256 0.80236 0.80459 0.79127 1.19234 1.20009 1.18767 1.30866 1.06102 1.12832 1.66465 0.88425 1.00491 0.72060 0.72466 0.72979 1.93381 1.71760 1.86766 1.44652 1.93311 1.72755 1.87718 1.46504 1.57503 1.63358 1.53821 1.08230 1.21482 1.00002 0.93599 0.85828 1.21666 0.98528 0.95732 1.00513 1.21000 0.99493 1.00239 0.94660 1.21011 1.02141 0.98400 0.95451 1.20951 0.84952 0.94913 0.92166 1.87025 1.13959 1.42346 1.89168 1.22465 0.98661 0.91693 0.97022 1.58813 1.11848 1.38808 1.28352 1.20896 0.95412 0.95423 0.85987 0.90094 0.89049 0.93024 0.92243 0.91523 0.92683 0.90559 0.92187 0.91014 0.79802 0.90543 0.93831 0.84779 0.84915 0.90634 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.62 13.19 55.43 0.73 -24.89 16 2 C 0.13 3.85 5.46 -17.82 -0.10 3.75 16 3 Si 0.92 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 7 C -1.03 -29.39 9.75 30.60 0.30 -29.09 16 8 H 0.10 2.57 7.81 -52.49 -0.41 2.16 16 9 S 2.72 74.20 4.51 -107.50 -0.48 73.71 16 10 O -0.98 -28.53 14.56 -66.51 -0.97 -29.50 16 11 O -1.01 -30.49 16.38 -57.17 -0.94 -31.43 16 12 N -1.00 -20.59 2.36 -113.51 -0.27 -20.86 16 13 C 0.12 2.08 6.21 -3.13 -0.02 2.06 16 14 C -0.13 -1.76 5.71 -27.48 -0.16 -1.92 16 15 C -0.12 -1.71 5.47 -28.02 -0.15 -1.87 16 16 C -0.13 -1.80 3.93 -29.79 -0.12 -1.92 16 17 C 0.11 1.76 0.77 -92.47 -0.07 1.69 16 18 O -0.52 -9.70 8.96 -58.01 -0.52 -10.22 16 19 C 0.03 0.42 5.94 -3.83 -0.02 0.40 16 20 N -0.85 -8.77 8.41 -10.37 -0.09 -8.86 16 21 C 0.15 2.66 4.53 -4.08 -0.02 2.64 16 22 H 0.29 7.86 8.31 -40.82 -0.34 7.52 16 23 H 0.09 1.81 6.65 -51.93 -0.35 1.46 16 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.74 7.32 -51.93 -0.38 0.36 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.38 6.78 -51.93 -0.35 1.03 16 29 H 0.06 0.75 7.36 -51.93 -0.38 0.37 16 30 H 0.07 0.92 7.11 -51.93 -0.37 0.55 16 31 H 0.36 5.17 7.60 45.56 0.35 5.52 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.34 2.88 9.08 -39.29 -0.36 2.52 16 35 H 0.34 3.34 7.58 -39.29 -0.30 3.04 16 36 H 0.08 1.07 8.07 -51.93 -0.42 0.66 16 37 H 0.08 1.54 7.64 -51.93 -0.40 1.15 16 LS Contribution 299.02 15.07 4.51 4.51 Total: -1.00 -36.32 299.02 -8.02 -44.34 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.61 Total: 11.35 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -0.36 Total: -24.26 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.38 Total: -54.60 kcal Atomic # 8 Polarization: -68.73 SS G_CDS: -2.42 Total: -71.15 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 74.20 SS G_CDS: -0.48 Total: 73.71 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.32 -8.02 -44.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238944746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.609 kcal (2) G-P(sol) polarization free energy of solvation -36.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds