Wall clock time and date at job start Tue Mar 31 2020 00:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47196 * 270.00230 * 3 2 1 5 5 H 1.48502 * 109.47265 * 30.00556 * 3 2 1 6 6 H 1.48503 * 109.47102 * 150.00194 * 3 2 1 7 7 C 1.37872 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00261 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99956 * 359.97438 * 7 2 1 10 10 O 1.42097 * 106.40354 * 293.53931 * 9 7 2 11 11 O 1.42107 * 106.40384 * 66.46133 * 9 7 2 12 12 N 1.65607 * 107.21942 * 179.97438 * 9 7 2 13 13 C 1.47599 * 118.64212 * 269.72880 * 12 9 7 14 14 C 1.53598 * 112.33991 * 222.03682 * 13 12 9 15 15 C 1.50883 * 109.95465 * 40.83739 * 14 13 12 16 16 C 1.52565 * 109.35832 * 268.02471 * 15 14 13 17 17 C 1.47096 * 114.32673 * 85.01202 * 16 15 14 18 18 O 1.42897 * 109.32733 * 57.45658 * 17 16 15 19 19 C 1.53001 * 109.18701 * 177.02828 * 17 16 15 20 20 N 1.46894 * 109.47023 * 305.77956 * 19 17 16 21 21 C 1.44578 * 118.64278 * 90.00047 * 12 9 7 22 22 H 0.97000 * 119.99617 * 359.97438 * 1 2 3 23 23 H 1.09000 * 108.94996 * 342.84096 * 13 12 9 24 24 H 1.09004 * 108.94550 * 101.46639 * 13 12 9 25 25 H 1.08999 * 109.51302 * 280.64183 * 14 13 12 26 26 H 1.09006 * 109.26103 * 160.87804 * 14 13 12 27 27 H 1.09002 * 109.49002 * 148.05797 * 15 14 13 28 28 H 1.08994 * 109.48542 * 27.98993 * 15 14 13 29 29 H 1.09007 * 108.51318 * 323.75443 * 16 15 14 30 30 H 1.09003 * 108.39032 * 206.17369 * 16 15 14 31 31 H 0.96694 * 114.00015 * 59.14016 * 18 17 16 32 32 H 1.08998 * 109.47231 * 65.77787 * 19 17 16 33 33 H 1.09006 * 109.46598 * 185.77980 * 19 17 16 34 34 H 1.00894 * 111.00104 * 180.02562 * 20 19 17 35 35 H 1.00903 * 111.00289 * 303.95807 * 20 19 17 36 36 H 1.09000 * 109.44990 * 209.29088 * 21 12 9 37 37 H 1.09001 * 109.44930 * 329.23827 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 16 1.1235 -2.7199 -0.0005 10 8 0.4519 -2.7955 1.2494 11 8 0.4509 -2.7950 -1.2501 12 7 2.2483 -3.9354 -0.0019 13 6 2.7233 -4.4583 -1.2979 14 6 2.8441 -5.9895 -1.3008 15 6 1.6690 -6.6001 -0.5778 16 6 2.0256 -6.7946 0.8928 17 6 1.8074 -5.6061 1.7316 18 8 0.4402 -5.2021 1.6329 19 6 2.1297 -5.9516 3.1868 20 7 1.3519 -7.1293 3.5943 21 6 2.7200 -4.4447 1.2663 22 1 -0.4849 0.8401 0.0004 23 1 2.0249 -4.1570 -2.0786 24 1 3.7014 -4.0291 -1.5156 25 1 3.7677 -6.2828 -0.8017 26 1 2.8605 -6.3470 -2.3304 27 1 1.4286 -7.5649 -1.0244 28 1 0.8079 -5.9368 -0.6585 29 1 3.0762 -7.0774 0.9598 30 1 1.4225 -7.6123 1.2877 31 1 -0.1912 -5.8806 1.9084 32 1 3.1937 -6.1683 3.2817 33 1 1.8723 -5.1071 3.8262 34 1 1.5469 -7.3775 4.5525 35 1 0.3644 -6.9766 3.4544 36 1 3.7415 -4.8082 1.1542 37 1 2.6981 -3.6467 2.0086 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238944746.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:31 Heat of formation + Delta-G solvation = -167.631687 kcal Electronic energy + Delta-G solvation = -22025.912325 eV Core-core repulsion = 18735.209874 eV Total energy + Delta-G solvation = -3290.702451 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70087 -37.42433 -36.96438 -35.86631 -35.14969 -34.57823 -34.11885 -31.92881 -28.22795 -27.68771 -26.31359 -24.16961 -21.47781 -21.16083 -20.59191 -18.87416 -18.20867 -17.83094 -17.45206 -16.90955 -16.67819 -15.96201 -15.61326 -15.27068 -15.10253 -14.93882 -14.49304 -14.00435 -13.94939 -13.84477 -13.42032 -13.27086 -13.05484 -13.02073 -12.89783 -12.32389 -12.28573 -12.21041 -12.02946 -11.79168 -11.58837 -11.46946 -11.24816 -11.18511 -10.81894 -10.68069 -9.60849 -9.59133 -8.71360 -7.45934 0.49674 1.30650 1.31513 1.47234 2.20637 2.58472 2.89020 3.41585 3.60688 3.83878 3.92356 4.04232 4.13345 4.19637 4.28210 4.37449 4.47072 4.55212 4.70235 4.79791 4.81361 4.91085 4.91714 5.09247 5.16942 5.21043 5.25914 5.38527 5.46001 5.50929 5.60377 5.91043 6.11765 6.24617 6.56136 6.79753 7.04807 8.22293 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.026027 B = 0.007077 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.555398 B = 3955.262591 C = 4354.511833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.248 1.248 7 C -1.056 5.056 8 H 0.112 0.888 9 S 2.725 3.275 10 O -1.008 7.008 11 O -1.055 7.055 12 N -0.988 5.988 13 C 0.106 3.894 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.125 4.125 17 C 0.110 3.890 18 O -0.560 6.560 19 C 0.042 3.958 20 N -0.841 5.841 21 C 0.136 3.864 22 H 0.297 0.703 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.369 0.631 32 H 0.098 0.902 33 H 0.022 0.978 34 H 0.353 0.647 35 H 0.340 0.660 36 H 0.118 0.882 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.814 -13.214 3.873 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.804 3.196 4 H -0.178 1.178 5 H -0.185 1.185 6 H -0.171 1.171 7 C -1.188 5.188 8 H 0.130 0.870 9 S 2.825 3.175 10 O -0.998 6.998 11 O -1.045 7.045 12 N -0.825 5.825 13 C -0.019 4.019 14 C -0.156 4.156 15 C -0.157 4.157 16 C -0.162 4.162 17 C 0.067 3.933 18 O -0.365 6.365 19 C -0.090 4.090 20 N -0.372 5.372 21 C 0.009 3.991 22 H 0.107 0.893 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.216 0.784 32 H 0.117 0.883 33 H 0.040 0.960 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.417 -13.126 3.081 15.894 hybrid contribution -0.357 1.544 0.855 1.801 sum 8.060 -11.582 3.936 14.649 Atomic orbital electron populations 1.70013 1.08794 1.32077 1.41852 1.26029 0.95363 1.05370 0.87638 0.85204 0.79244 0.75030 0.80151 1.17760 1.18501 1.17066 1.31281 1.07056 1.14051 1.66402 0.86959 0.99949 0.72730 0.73178 0.71598 1.93323 1.73459 1.87510 1.45523 1.93243 1.74693 1.88524 1.48052 1.56908 1.62424 1.52625 1.10541 1.21769 0.99888 0.96803 0.83440 1.21678 0.99433 0.92203 1.02281 1.21031 0.98214 1.00417 0.96039 1.20932 1.03686 0.97461 0.94162 1.21076 0.83183 0.94676 0.94350 1.86986 1.15918 1.44013 1.89628 1.22304 1.00160 0.91804 0.94686 1.58795 1.11825 1.37217 1.29400 1.21302 0.98161 0.95752 0.83867 0.89311 0.92112 0.90825 0.89261 0.89358 0.90419 0.94860 0.89821 0.90037 0.78385 0.88343 0.95980 0.83291 0.84726 0.86385 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.96 13.19 21.45 0.28 -55.68 16 2 C 0.07 3.97 5.46 84.65 0.46 4.43 16 3 Si 0.99 42.91 29.54 68.60 2.03 44.94 16 4 H -0.25 -10.38 7.11 99.48 0.71 -9.68 16 5 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 6 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 7 C -1.06 -61.39 9.75 67.73 0.66 -60.73 16 8 H 0.11 5.93 7.81 -2.91 -0.02 5.90 16 9 S 2.73 154.41 4.51 -56.49 -0.25 154.16 16 10 O -1.01 -61.81 14.56 -119.07 -1.73 -63.55 16 11 O -1.05 -66.90 16.38 -128.00 -2.10 -69.00 16 12 N -0.99 -40.96 2.36 -513.02 -1.21 -42.17 16 13 C 0.11 3.68 6.21 86.37 0.54 4.21 16 14 C -0.12 -2.94 5.71 30.11 0.17 -2.77 16 15 C -0.12 -3.28 5.47 29.76 0.16 -3.12 16 16 C -0.12 -3.03 3.93 28.61 0.11 -2.92 16 17 C 0.11 3.26 0.77 -11.99 -0.01 3.25 16 18 O -0.56 -21.35 8.96 -127.20 -1.14 -22.49 16 19 C 0.04 1.00 5.94 86.30 0.51 1.51 16 20 N -0.84 -15.53 8.41 -186.72 -1.57 -17.10 16 21 C 0.14 4.64 4.53 87.38 0.40 5.04 16 22 H 0.30 16.64 8.31 -92.71 -0.77 15.87 16 23 H 0.06 2.47 6.65 -2.39 -0.02 2.46 16 24 H 0.07 2.20 8.14 -2.38 -0.02 2.19 16 25 H 0.09 1.75 7.32 -2.39 -0.02 1.73 16 26 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.03 1.21 6.78 -2.39 -0.02 1.19 16 29 H 0.08 1.68 7.36 -2.38 -0.02 1.66 16 30 H 0.08 1.84 7.11 -2.39 -0.02 1.83 16 31 H 0.37 11.04 7.60 -74.06 -0.56 10.47 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.35 5.11 9.08 -89.70 -0.81 4.30 16 35 H 0.34 6.26 7.58 -89.69 -0.68 5.58 16 36 H 0.12 2.96 8.07 -2.39 -0.02 2.94 16 37 H 0.06 2.27 7.64 -2.39 -0.02 2.25 16 Total: -1.00 -82.84 299.02 -3.64 -86.48 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -0.95 Total: 35.48 kcal Atomic # 6 Polarization: -54.09 SS G_CDS: 3.01 Total: -51.09 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -2.50 Total: -114.95 kcal Atomic # 8 Polarization: -150.06 SS G_CDS: -4.97 Total: -155.03 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 154.41 SS G_CDS: -0.25 Total: 154.16 kcal Total: -82.84 -3.64 -86.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238944746.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.149 kcal (2) G-P(sol) polarization free energy of solvation -82.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds