Wall clock time and date at job start Tue Mar 31 2020 00:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99443 * 2 1 4 4 H 1.48499 * 109.47197 * 239.99439 * 3 2 1 5 5 H 1.48497 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46957 * 120.00015 * 3 2 1 7 7 C 1.37876 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99865 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99957 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40198 * 66.45885 * 9 7 2 11 11 O 1.42097 * 106.40133 * 293.53940 * 9 7 2 12 12 N 1.65600 * 107.21561 * 179.97438 * 9 7 2 13 13 C 1.47609 * 118.64299 * 90.00257 * 12 9 7 14 14 C 1.53945 * 112.14094 * 137.84356 * 13 12 9 15 15 C 1.50883 * 109.99562 * 319.50053 * 14 13 12 16 16 C 1.52426 * 109.43653 * 92.01041 * 15 14 13 17 17 C 1.47088 * 114.22165 * 274.85043 * 16 15 14 18 18 O 1.42903 * 109.32774 * 302.52144 * 17 16 15 19 19 C 1.53006 * 109.18800 * 182.96071 * 17 16 15 20 20 N 1.46893 * 109.47216 * 59.21530 * 19 17 16 21 21 C 1.44574 * 118.64362 * 269.97730 * 12 9 7 22 22 H 0.96998 * 120.00497 * 0.02562 * 1 2 3 23 23 H 1.09006 * 108.94483 * 17.15904 * 13 12 9 24 24 H 1.08998 * 108.94311 * 258.52908 * 13 12 9 25 25 H 1.09002 * 109.36648 * 79.62867 * 14 13 12 26 26 H 1.09001 * 109.36889 * 199.37209 * 14 13 12 27 27 H 1.08996 * 109.48743 * 211.79187 * 15 14 13 28 28 H 1.09005 * 109.48567 * 331.85685 * 15 14 13 29 29 H 1.08995 * 108.57721 * 153.60990 * 16 15 14 30 30 H 1.09001 * 108.43170 * 35.97393 * 16 15 14 31 31 H 0.96695 * 114.00251 * 300.87602 * 18 17 16 32 32 H 1.09004 * 109.47212 * 179.21545 * 19 17 16 33 33 H 1.08997 * 109.47139 * 299.21317 * 19 17 16 34 34 H 1.00906 * 111.00066 * 56.04615 * 20 19 17 35 35 H 1.00900 * 111.00585 * 180.02562 * 20 19 17 36 36 H 1.08990 * 109.45501 * 30.79330 * 21 12 9 37 37 H 1.09003 * 109.44776 * 150.74394 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9353 0.0005 13 6 2.7291 -4.4546 1.2960 14 6 2.8459 -5.9896 1.2984 15 6 1.6699 -6.5976 0.5746 16 6 2.0251 -6.7944 -0.8946 17 6 1.8061 -5.6058 -1.7328 18 8 0.4390 -5.2019 -1.6329 19 6 2.1269 -5.9510 -3.1885 20 7 1.2626 -7.0526 -3.6325 21 6 2.7189 -4.4442 -1.2683 22 1 -0.4851 0.8400 -0.0004 23 1 2.0338 -4.1512 2.0788 24 1 3.7080 -4.0248 1.5083 25 1 3.7690 -6.2827 0.7983 26 1 2.8623 -6.3493 2.3273 27 1 1.4287 -7.5630 1.0194 28 1 0.8093 -5.9337 0.6571 29 1 1.4240 -7.6129 -1.2905 30 1 3.0762 -7.0754 -0.9603 31 1 -0.1927 -5.8805 -1.9078 32 1 1.9527 -5.0769 -3.8161 33 1 3.1710 -6.2534 -3.2685 34 1 0.2885 -6.8209 -3.5074 35 1 1.4555 -7.2997 -4.5915 36 1 2.6967 -3.6462 -2.0102 37 1 3.7404 -4.8082 -1.1571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238944756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:34 Heat of formation + Delta-G solvation = -136.020921 kcal Electronic energy + Delta-G solvation = -22027.620010 eV Core-core repulsion = 18738.288304 eV Total energy + Delta-G solvation = -3289.331706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.46511 -35.90444 -34.94935 -33.65109 -33.41990 -33.03153 -32.72460 -30.75474 -26.47059 -25.99874 -25.04929 -22.95791 -20.09751 -19.94689 -18.57473 -17.07778 -16.75795 -16.30779 -15.87900 -15.46307 -14.92091 -14.48725 -14.15165 -13.86175 -13.55788 -13.49448 -13.09152 -12.74277 -12.59231 -12.15629 -11.87636 -11.76990 -11.50947 -11.14943 -11.12929 -10.87330 -10.59404 -10.54116 -10.43851 -10.11721 -9.95497 -9.83227 -9.74059 -9.49119 -9.15057 -8.70439 -8.67614 -8.00581 -6.59298 -5.20964 2.49173 3.12221 3.16438 3.22601 4.12023 4.39361 4.57882 4.73269 4.81633 4.97076 5.12409 5.23132 5.34933 5.50382 5.57581 5.69595 5.78759 5.94586 5.95470 6.04303 6.12696 6.22088 6.24842 6.36517 6.42006 6.52014 6.58460 6.70501 6.77492 6.94292 7.02922 7.32780 7.41207 7.85671 8.06228 8.20689 8.98779 10.33336 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.007107 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.895110 B = 3938.658501 C = 4346.629228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.134 3.866 3 Si 0.915 3.085 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.265 1.265 7 C -1.031 5.031 8 H 0.097 0.903 9 S 2.721 3.279 10 O -0.976 6.976 11 O -1.012 7.012 12 N -0.996 5.996 13 C 0.116 3.884 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.133 4.133 17 C 0.114 3.886 18 O -0.522 6.522 19 C 0.034 3.966 20 N -0.849 5.849 21 C 0.151 3.849 22 H 0.289 0.711 23 H 0.091 0.909 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.357 0.643 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.339 0.661 35 H 0.341 0.659 36 H 0.082 0.918 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.179 -11.993 -3.519 13.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.739 3.261 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.189 1.189 7 C -1.164 5.164 8 H 0.115 0.885 9 S 2.821 3.179 10 O -0.966 6.966 11 O -1.003 7.003 12 N -0.829 5.829 13 C -0.009 4.009 14 C -0.164 4.164 15 C -0.153 4.153 16 C -0.171 4.171 17 C 0.071 3.929 18 O -0.325 6.325 19 C -0.098 4.098 20 N -0.379 5.379 21 C 0.023 3.977 22 H 0.100 0.900 23 H 0.109 0.891 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.152 0.848 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.740 -11.915 -2.709 13.500 hybrid contribution 0.565 1.326 -0.969 1.737 sum 6.305 -10.589 -3.678 12.861 Atomic orbital electron populations 1.69900 1.06712 1.30552 1.40438 1.24718 0.94402 1.00590 0.88642 0.86294 0.79982 0.80112 0.79694 1.18969 1.20135 1.18921 1.30846 1.06060 1.12867 1.66579 0.88477 1.00474 0.72056 0.72442 0.72977 1.93381 1.71770 1.86761 1.44650 1.93310 1.72733 1.87716 1.46511 1.57505 1.63234 1.53951 1.08238 1.21556 0.99945 0.93586 0.85838 1.21722 0.98488 0.95709 1.00505 1.20966 0.99515 1.00250 0.94610 1.21003 1.02062 0.98433 0.95579 1.20944 0.84986 0.94864 0.92142 1.87021 1.13949 1.42376 1.89162 1.22450 0.97728 0.92722 0.96887 1.58782 1.09320 1.42143 1.27690 1.20899 0.95431 0.95423 0.85981 0.90031 0.89053 0.92978 0.92268 0.91509 0.92703 0.90512 0.91037 0.92227 0.79722 0.93920 0.90597 0.84787 0.84733 0.90012 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.63 13.19 55.43 0.73 -24.90 16 2 C 0.13 3.86 5.46 -17.82 -0.10 3.76 16 3 Si 0.92 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 7 C -1.03 -29.41 9.75 30.60 0.30 -29.11 16 8 H 0.10 2.55 7.81 -52.49 -0.41 2.14 16 9 S 2.72 74.19 4.51 -107.50 -0.48 73.70 16 10 O -0.98 -28.52 14.56 -66.51 -0.97 -29.49 16 11 O -1.01 -30.48 16.39 -57.17 -0.94 -31.42 16 12 N -1.00 -20.57 2.35 -113.31 -0.27 -20.84 16 13 C 0.12 2.07 6.24 -2.94 -0.02 2.05 16 14 C -0.13 -1.75 5.72 -27.30 -0.16 -1.91 16 15 C -0.12 -1.71 5.45 -28.09 -0.15 -1.86 16 16 C -0.13 -1.81 3.99 -29.86 -0.12 -1.93 16 17 C 0.11 1.77 0.77 -92.47 -0.07 1.70 16 18 O -0.52 -9.72 8.92 -58.01 -0.52 -10.24 16 19 C 0.03 0.43 5.91 -3.82 -0.02 0.41 16 20 N -0.85 -8.91 8.60 -10.37 -0.09 -9.00 16 21 C 0.15 2.65 4.53 -4.09 -0.02 2.63 16 22 H 0.29 7.90 8.31 -40.82 -0.34 7.56 16 23 H 0.09 1.80 6.66 -51.93 -0.35 1.46 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.73 7.31 -51.93 -0.38 0.35 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.39 6.78 -51.93 -0.35 1.04 16 29 H 0.07 0.92 7.24 -51.93 -0.38 0.55 16 30 H 0.06 0.74 7.35 -51.93 -0.38 0.36 16 31 H 0.36 5.23 7.44 45.56 0.34 5.57 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.34 3.45 7.40 -39.29 -0.29 3.16 16 35 H 0.34 2.92 9.08 -39.29 -0.36 2.57 16 36 H 0.08 1.54 7.64 -51.93 -0.40 1.14 16 37 H 0.08 1.07 8.06 -51.93 -0.42 0.65 16 LS Contribution 298.98 15.07 4.51 4.51 Total: -1.00 -36.25 298.98 -8.02 -44.27 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -4.62 Total: 11.55 kcal Atomic # 6 Polarization: -23.90 SS G_CDS: -0.36 Total: -24.26 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.38 Total: -54.73 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -2.42 Total: -71.14 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 74.19 SS G_CDS: -0.48 Total: 73.70 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.25 -8.02 -44.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238944756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.751 kcal (2) G-P(sol) polarization free energy of solvation -36.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds