Wall clock time and date at job start Tue Mar 31 2020 00:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99443 * 2 1 4 4 H 1.48499 * 109.47197 * 239.99439 * 3 2 1 5 5 H 1.48497 * 109.47451 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46957 * 120.00015 * 3 2 1 7 7 C 1.37876 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99865 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99957 * 0.02562 * 7 2 1 10 10 O 1.42100 * 106.40198 * 66.45885 * 9 7 2 11 11 O 1.42097 * 106.40133 * 293.53940 * 9 7 2 12 12 N 1.65600 * 107.21561 * 179.97438 * 9 7 2 13 13 C 1.47609 * 118.64299 * 90.00257 * 12 9 7 14 14 C 1.53945 * 112.14094 * 137.84356 * 13 12 9 15 15 C 1.50883 * 109.99562 * 319.50053 * 14 13 12 16 16 C 1.52426 * 109.43653 * 92.01041 * 15 14 13 17 17 C 1.47088 * 114.22165 * 274.85043 * 16 15 14 18 18 O 1.42903 * 109.32774 * 302.52144 * 17 16 15 19 19 C 1.53006 * 109.18800 * 182.96071 * 17 16 15 20 20 N 1.46893 * 109.47216 * 59.21530 * 19 17 16 21 21 C 1.44574 * 118.64362 * 269.97730 * 12 9 7 22 22 H 0.96998 * 120.00497 * 0.02562 * 1 2 3 23 23 H 1.09006 * 108.94483 * 17.15904 * 13 12 9 24 24 H 1.08998 * 108.94311 * 258.52908 * 13 12 9 25 25 H 1.09002 * 109.36648 * 79.62867 * 14 13 12 26 26 H 1.09001 * 109.36889 * 199.37209 * 14 13 12 27 27 H 1.08996 * 109.48743 * 211.79187 * 15 14 13 28 28 H 1.09005 * 109.48567 * 331.85685 * 15 14 13 29 29 H 1.08995 * 108.57721 * 153.60990 * 16 15 14 30 30 H 1.09001 * 108.43170 * 35.97393 * 16 15 14 31 31 H 0.96695 * 114.00251 * 300.87602 * 18 17 16 32 32 H 1.09004 * 109.47212 * 179.21545 * 19 17 16 33 33 H 1.08997 * 109.47139 * 299.21317 * 19 17 16 34 34 H 1.00906 * 111.00066 * 56.04615 * 20 19 17 35 35 H 1.00900 * 111.00585 * 180.02562 * 20 19 17 36 36 H 1.08990 * 109.45501 * 30.79330 * 21 12 9 37 37 H 1.09003 * 109.44776 * 150.74394 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 16 1.1237 -2.7200 0.0005 10 8 0.4520 -2.7955 -1.2494 11 8 0.4511 -2.7950 1.2500 12 7 2.2485 -3.9353 0.0005 13 6 2.7291 -4.4546 1.2960 14 6 2.8459 -5.9896 1.2984 15 6 1.6699 -6.5976 0.5746 16 6 2.0251 -6.7944 -0.8946 17 6 1.8061 -5.6058 -1.7328 18 8 0.4390 -5.2019 -1.6329 19 6 2.1269 -5.9510 -3.1885 20 7 1.2626 -7.0526 -3.6325 21 6 2.7189 -4.4442 -1.2683 22 1 -0.4851 0.8400 -0.0004 23 1 2.0338 -4.1512 2.0788 24 1 3.7080 -4.0248 1.5083 25 1 3.7690 -6.2827 0.7983 26 1 2.8623 -6.3493 2.3273 27 1 1.4287 -7.5630 1.0194 28 1 0.8093 -5.9337 0.6571 29 1 1.4240 -7.6129 -1.2905 30 1 3.0762 -7.0754 -0.9603 31 1 -0.1927 -5.8805 -1.9078 32 1 1.9527 -5.0769 -3.8161 33 1 3.1710 -6.2534 -3.2685 34 1 0.2885 -6.8209 -3.5074 35 1 1.4555 -7.2997 -4.5915 36 1 2.6967 -3.6462 -2.0102 37 1 3.7404 -4.8082 -1.1571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238944756.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:12:33 Heat of formation + Delta-G solvation = -167.640041 kcal Electronic energy + Delta-G solvation = -22028.991118 eV Core-core repulsion = 18738.288304 eV Total energy + Delta-G solvation = -3290.702814 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70122 -37.42038 -36.96692 -35.86600 -35.14855 -34.53367 -34.12861 -31.96078 -28.22620 -27.66869 -26.33768 -24.14403 -21.47483 -21.17064 -20.59492 -18.87301 -18.20597 -17.86181 -17.44350 -16.90916 -16.68243 -15.96967 -15.62567 -15.27348 -15.07505 -14.93390 -14.49443 -13.99180 -13.94303 -13.82827 -13.41566 -13.29671 -13.05524 -13.00451 -12.89762 -12.34334 -12.28698 -12.20870 -12.03260 -11.79510 -11.59423 -11.46532 -11.23788 -11.19261 -10.82673 -10.68916 -9.60883 -9.59468 -8.71189 -7.45995 0.49658 1.30554 1.32963 1.45772 2.20587 2.58609 2.88829 3.41712 3.59922 3.83559 3.92534 4.03746 4.13472 4.20027 4.28681 4.37010 4.46993 4.55051 4.70847 4.79685 4.81097 4.90754 4.91612 5.08749 5.16699 5.20496 5.25445 5.38143 5.45784 5.50340 5.59990 5.90663 6.11181 6.24555 6.55568 6.79651 7.04725 8.22270 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.025827 B = 0.007107 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.895110 B = 3938.658501 C = 4346.629228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.985 3.015 4 H -0.249 1.249 5 H -0.262 1.262 6 H -0.250 1.250 7 C -1.057 5.057 8 H 0.112 0.888 9 S 2.725 3.275 10 O -1.008 7.008 11 O -1.055 7.055 12 N -0.988 5.988 13 C 0.105 3.895 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.126 4.126 17 C 0.110 3.890 18 O -0.559 6.559 19 C 0.042 3.958 20 N -0.842 5.842 21 C 0.136 3.864 22 H 0.297 0.703 23 H 0.060 0.940 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.369 0.631 32 H 0.021 0.979 33 H 0.099 0.901 34 H 0.340 0.660 35 H 0.354 0.646 36 H 0.059 0.941 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 -13.143 -3.875 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.803 3.197 4 H -0.173 1.173 5 H -0.186 1.186 6 H -0.174 1.174 7 C -1.189 5.189 8 H 0.131 0.869 9 S 2.826 3.174 10 O -0.998 6.998 11 O -1.045 7.045 12 N -0.825 5.825 13 C -0.019 4.019 14 C -0.156 4.156 15 C -0.157 4.157 16 C -0.163 4.163 17 C 0.067 3.933 18 O -0.365 6.365 19 C -0.089 4.089 20 N -0.374 5.374 21 C 0.009 3.991 22 H 0.107 0.893 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.216 0.784 32 H 0.040 0.960 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.455 -13.097 -3.080 15.890 hybrid contribution -0.282 1.588 -0.859 1.827 sum 8.173 -11.509 -3.939 14.655 Atomic orbital electron populations 1.70005 1.08792 1.32151 1.41777 1.26026 0.95358 1.05354 0.87636 0.85245 0.78922 0.74752 0.80775 1.17308 1.18603 1.17356 1.31269 1.07059 1.14084 1.66498 0.86945 0.99935 0.72733 0.73159 0.71594 1.93323 1.73469 1.87506 1.45521 1.93242 1.74679 1.88523 1.48062 1.56909 1.62309 1.52738 1.10552 1.21846 0.99838 0.96806 0.83436 1.21733 0.99394 0.92158 1.02271 1.20996 0.98247 1.00417 0.96003 1.20925 1.03677 0.97460 0.94269 1.21077 0.83208 0.94654 0.94334 1.86983 1.15912 1.44015 1.89619 1.22305 0.99350 0.92692 0.94599 1.58769 1.09126 1.40761 1.28732 1.21304 0.98196 0.95734 0.83849 0.89299 0.92130 0.90763 0.89241 0.89351 0.90450 0.94845 0.90137 0.89733 0.78363 0.96020 0.88239 0.84730 0.83241 0.92245 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.98 13.19 21.45 0.28 -55.70 16 2 C 0.07 3.99 5.46 84.65 0.46 4.45 16 3 Si 0.99 42.88 29.54 68.60 2.03 44.91 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 7 C -1.06 -61.45 9.75 67.73 0.66 -60.79 16 8 H 0.11 5.92 7.81 -2.91 -0.02 5.89 16 9 S 2.73 154.40 4.51 -56.49 -0.25 154.15 16 10 O -1.01 -61.80 14.56 -119.07 -1.73 -63.53 16 11 O -1.05 -66.90 16.39 -128.00 -2.10 -69.00 16 12 N -0.99 -40.91 2.35 -512.39 -1.20 -42.12 16 13 C 0.11 3.66 6.24 86.49 0.54 4.20 16 14 C -0.12 -2.92 5.72 30.23 0.17 -2.75 16 15 C -0.12 -3.27 5.45 29.72 0.16 -3.11 16 16 C -0.13 -3.06 3.99 28.57 0.11 -2.94 16 17 C 0.11 3.27 0.77 -11.99 -0.01 3.26 16 18 O -0.56 -21.38 8.92 -127.20 -1.13 -22.52 16 19 C 0.04 1.00 5.91 86.31 0.51 1.51 16 20 N -0.84 -15.91 8.60 -186.72 -1.61 -17.51 16 21 C 0.14 4.63 4.53 87.38 0.40 5.03 16 22 H 0.30 16.69 8.31 -92.71 -0.77 15.92 16 23 H 0.06 2.46 6.66 -2.38 -0.02 2.45 16 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.09 1.74 7.31 -2.39 -0.02 1.72 16 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.03 1.22 6.78 -2.38 -0.02 1.20 16 29 H 0.08 1.83 7.24 -2.39 -0.02 1.82 16 30 H 0.08 1.67 7.35 -2.39 -0.02 1.65 16 31 H 0.37 11.15 7.44 -74.06 -0.55 10.60 16 32 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.34 6.53 7.40 -89.69 -0.66 5.87 16 35 H 0.35 5.24 9.08 -89.69 -0.81 4.42 16 36 H 0.06 2.26 7.64 -2.39 -0.02 2.25 16 37 H 0.12 2.95 8.06 -2.39 -0.02 2.93 16 Total: -1.00 -82.77 298.98 -3.63 -86.41 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.92 Total: 36.05 kcal Atomic # 6 Polarization: -54.14 SS G_CDS: 3.01 Total: -51.13 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -2.53 Total: -115.33 kcal Atomic # 8 Polarization: -150.09 SS G_CDS: -4.97 Total: -155.05 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 154.40 SS G_CDS: -0.25 Total: 154.15 kcal Total: -82.77 -3.63 -86.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238944756.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.235 kcal (2) G-P(sol) polarization free energy of solvation -82.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds