Wall clock time and date at job start Tue Mar 31 2020 00:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36161 * 119.94808 * 2 1 4 4 C 1.40976 * 119.88767 * 180.27146 * 3 2 1 5 5 C 1.40942 * 120.09844 * 179.74046 * 4 3 2 6 6 H 1.08000 * 119.99812 * 24.72423 * 5 4 3 7 7 C 1.39887 * 119.99853 * 204.72467 * 5 4 3 8 8 N 1.30871 * 120.00333 * 18.01077 * 7 5 4 9 9 Si 1.86801 * 119.99891 * 198.01138 * 7 5 4 10 10 H 1.48500 * 109.46956 * 94.68978 * 9 7 5 11 11 H 1.48500 * 109.47245 * 214.68763 * 9 7 5 12 12 H 1.48499 * 109.47063 * 334.68806 * 9 7 5 13 13 C 1.41004 * 119.80062 * 359.72374 * 4 3 2 14 14 C 1.36122 * 119.89213 * 359.97438 * 13 4 3 15 15 C 1.40110 * 119.94258 * 179.72301 * 2 1 3 16 16 C 1.47628 * 119.89933 * 359.97438 * 15 2 1 17 17 C 1.35978 * 127.11242 * 244.70528 * 16 15 2 18 18 O 1.34129 * 109.82304 * 179.97438 * 17 16 15 19 19 C 1.34905 * 111.25628 * 359.97438 * 18 17 16 20 20 C 1.38959 * 133.11201 * 180.02562 * 19 18 17 21 21 C 1.37861 * 119.97826 * 179.97438 * 20 19 18 22 22 C 1.38696 * 120.66156 * 359.97438 * 21 20 19 23 23 C 1.37825 * 120.21499 * 0.02562 * 22 21 20 24 24 C 1.39198 * 119.62433 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47274 * 270.28175 * 1 2 3 26 26 H 1.09005 * 109.47136 * 30.27916 * 1 2 3 27 27 H 1.08999 * 109.47688 * 150.27937 * 1 2 3 28 28 H 1.07996 * 120.05515 * 359.96769 * 3 2 1 29 29 H 0.97003 * 120.00362 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.05552 * 180.02562 * 13 4 3 31 31 H 1.08000 * 119.95234 * 180.02562 * 14 13 4 32 32 H 1.08001 * 125.08488 * 359.96101 * 17 16 15 33 33 H 1.08007 * 120.01116 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.66882 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.89082 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.18962 * 179.74230 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.1798 0.0000 4 6 3.5965 1.1783 -0.0058 5 6 4.3045 2.3970 -0.0113 6 1 3.8428 3.2915 0.3798 7 6 5.6053 2.4477 -0.5235 8 7 6.0391 1.4910 -1.3040 9 14 6.7231 3.8813 -0.0934 10 1 7.5688 3.5172 1.0717 11 1 7.5914 4.1979 -1.2557 12 1 5.8976 5.0682 0.2457 13 6 4.2959 -0.0460 -0.0057 14 6 3.6078 -1.2204 0.0006 15 6 2.2063 -1.2141 0.0059 16 6 1.4646 -2.4905 0.0126 17 6 1.4534 -3.4277 0.9978 18 8 0.6622 -4.4510 0.6431 19 6 0.1169 -4.2486 -0.5741 20 6 -0.7500 -4.9955 -1.3626 21 6 -1.1439 -4.5191 -2.5948 22 6 -0.6839 -3.2963 -3.0604 23 6 0.1763 -2.5409 -2.2930 24 6 0.5817 -3.0125 -1.0476 25 1 -0.3634 0.0051 1.0276 26 1 -0.3634 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6468 2.1151 -0.0005 29 1 6.9410 1.5264 -1.6594 30 1 5.3759 -0.0519 -0.0097 31 1 4.1426 -2.1587 0.0011 32 1 2.0000 -3.3585 1.9267 33 1 -1.1156 -5.9486 -1.0098 34 1 -1.8181 -5.1035 -3.2033 35 1 -1.0009 -2.9348 -4.0275 36 1 0.5375 -1.5907 -2.6577 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239063844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:31 Heat of formation + Delta-G solvation = 34.132984 kcal Electronic energy + Delta-G solvation = -20223.666615 eV Core-core repulsion = 17217.118649 eV Total energy + Delta-G solvation = -3006.547967 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96768 -37.84868 -37.52780 -34.32828 -32.48532 -31.25703 -30.26237 -29.74838 -28.53494 -25.85209 -25.19877 -23.03448 -21.89549 -21.52622 -20.25031 -19.29619 -17.02809 -16.82564 -16.76185 -15.72959 -15.51880 -15.29225 -14.21885 -13.88211 -13.81164 -13.60299 -13.39859 -12.93986 -12.52865 -12.32564 -12.13422 -11.90394 -11.74393 -11.59008 -11.47817 -11.12101 -10.92245 -10.77754 -10.56576 -10.49376 -9.79823 -9.58827 -9.31679 -9.17832 -8.36432 -7.84301 -7.47658 -7.16097 -6.86164 -4.42815 1.20148 1.59855 2.48852 2.87984 3.01869 3.04977 3.05864 3.16953 3.18092 3.85325 3.98682 4.47866 4.88755 4.97660 5.13079 5.40062 5.49237 5.63242 5.66996 5.86113 5.97111 5.99730 6.10476 6.18995 6.34420 6.36719 6.49007 6.58391 6.60757 6.69069 6.83955 6.92853 6.95019 6.98320 7.19674 7.30332 7.55412 7.58289 7.87508 7.99082 8.07850 8.20925 8.55092 8.79345 8.90115 10.06545 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.004142 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.570537 B = 6758.315362 C = 6890.700400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.033 4.033 3 C -0.228 4.228 4 C 0.120 3.880 5 C -0.455 4.455 6 H 0.080 0.920 7 C 0.076 3.924 8 N -0.785 5.785 9 Si 0.909 3.091 10 H -0.267 1.267 11 H -0.277 1.277 12 H -0.261 1.261 13 C -0.173 4.173 14 C -0.075 4.075 15 C -0.179 4.179 16 C -0.068 4.068 17 C -0.031 4.031 18 O -0.200 6.200 19 C 0.046 3.954 20 C -0.116 4.116 21 C -0.102 4.102 22 C -0.148 4.148 23 C -0.059 4.059 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.282 0.718 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.205 0.795 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.948 -7.516 -0.507 10.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.033 4.033 3 C -0.248 4.248 4 C 0.118 3.882 5 C -0.484 4.484 6 H 0.098 0.902 7 C -0.143 4.143 8 N -0.409 5.409 9 Si 0.733 3.267 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.185 1.185 13 C -0.192 4.192 14 C -0.093 4.093 15 C -0.180 4.180 16 C -0.070 4.070 17 C -0.095 4.095 18 O -0.102 6.102 19 C -0.002 4.002 20 C -0.135 4.135 21 C -0.120 4.120 22 C -0.166 4.166 23 C -0.077 4.077 24 C -0.118 4.118 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.106 0.894 32 H 0.221 0.779 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.788 -7.805 -0.506 11.038 hybrid contribution 0.757 0.758 0.041 1.072 sum -7.031 -7.047 -0.465 9.965 Atomic orbital electron populations 1.20802 0.93941 1.01336 1.00766 1.19070 0.93423 0.92582 0.98246 1.20513 0.94182 0.95337 1.14750 1.17670 0.90860 0.93199 0.86510 1.19603 0.97796 0.96115 1.34878 0.90211 1.25960 0.98488 0.97344 0.92530 1.69857 1.17957 1.31803 1.21274 0.86280 0.79871 0.81466 0.79049 1.19215 1.20184 1.18454 1.20943 0.99694 0.91335 1.07207 1.20431 0.92263 0.96959 0.99686 1.17175 0.91746 0.88208 1.20872 1.19955 0.98804 0.96188 0.92005 1.24228 0.97701 0.86930 1.00600 1.83842 1.52834 1.42714 1.30800 1.19623 0.98739 0.96111 0.85709 1.19824 0.99400 1.00159 0.94110 1.20799 1.00054 0.96338 0.94787 1.20983 0.99858 0.95431 1.00342 1.20641 0.95458 0.99596 0.91997 1.20061 1.00451 0.94963 0.96347 0.92851 0.92938 0.92229 0.88876 0.90670 0.86450 0.89441 0.77862 0.85717 0.85397 0.85751 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.08 9.60 36.00 0.35 -1.74 16 2 C -0.03 -0.73 5.87 -104.67 -0.61 -1.35 16 3 C -0.23 -5.50 9.36 -39.29 -0.37 -5.87 16 4 C 0.12 3.13 5.57 -106.79 -0.60 2.53 16 5 C -0.46 -11.75 9.02 -37.94 -0.34 -12.09 16 6 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 7 C 0.08 1.85 5.12 -17.34 -0.09 1.76 16 8 N -0.78 -19.77 10.96 55.54 0.61 -19.16 16 9 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 10 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 11 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 12 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 13 C -0.17 -4.39 8.62 -39.30 -0.34 -4.73 16 14 C -0.07 -1.74 9.71 -39.62 -0.38 -2.12 16 15 C -0.18 -3.94 5.82 -104.64 -0.61 -4.55 16 16 C -0.07 -1.33 4.83 -103.10 -0.50 -1.82 16 17 C -0.03 -0.53 11.98 29.92 0.36 -0.17 16 18 O -0.20 -3.39 10.55 4.50 0.05 -3.34 16 19 C 0.05 0.76 7.39 -38.54 -0.28 0.48 16 20 C -0.12 -1.59 10.06 -39.45 -0.40 -1.98 16 21 C -0.10 -1.24 10.01 -39.55 -0.40 -1.64 16 22 C -0.15 -1.98 10.04 -39.56 -0.40 -2.38 16 23 C -0.06 -0.97 9.03 -39.38 -0.36 -1.33 16 24 C -0.12 -2.13 5.20 -104.99 -0.55 -2.68 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.06 1.08 4.90 -51.93 -0.25 0.83 16 28 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 30 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 31 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.20 2.86 8.06 -52.49 -0.42 2.44 16 33 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 309.57 15.07 4.67 4.67 Total: -1.00 -27.72 309.57 -9.15 -36.87 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -3.93 Total: 7.56 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: -5.51 Total: -39.66 kcal Atomic # 7 Polarization: -19.77 SS G_CDS: 0.61 Total: -19.16 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: 0.05 Total: -3.34 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.72 -9.15 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239063844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.000 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds