Wall clock time and date at job start Tue Mar 31 2020 00:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36161 * 119.94808 * 2 1 4 4 C 1.40976 * 119.88767 * 180.27146 * 3 2 1 5 5 C 1.40942 * 120.09844 * 179.74046 * 4 3 2 6 6 H 1.08000 * 119.99812 * 24.72423 * 5 4 3 7 7 C 1.39887 * 119.99853 * 204.72467 * 5 4 3 8 8 N 1.30871 * 120.00333 * 18.01077 * 7 5 4 9 9 Si 1.86801 * 119.99891 * 198.01138 * 7 5 4 10 10 H 1.48500 * 109.46956 * 94.68978 * 9 7 5 11 11 H 1.48500 * 109.47245 * 214.68763 * 9 7 5 12 12 H 1.48499 * 109.47063 * 334.68806 * 9 7 5 13 13 C 1.41004 * 119.80062 * 359.72374 * 4 3 2 14 14 C 1.36122 * 119.89213 * 359.97438 * 13 4 3 15 15 C 1.40110 * 119.94258 * 179.72301 * 2 1 3 16 16 C 1.47628 * 119.89933 * 359.97438 * 15 2 1 17 17 C 1.35978 * 127.11242 * 244.70528 * 16 15 2 18 18 O 1.34129 * 109.82304 * 179.97438 * 17 16 15 19 19 C 1.34905 * 111.25628 * 359.97438 * 18 17 16 20 20 C 1.38959 * 133.11201 * 180.02562 * 19 18 17 21 21 C 1.37861 * 119.97826 * 179.97438 * 20 19 18 22 22 C 1.38696 * 120.66156 * 359.97438 * 21 20 19 23 23 C 1.37825 * 120.21499 * 0.02562 * 22 21 20 24 24 C 1.39198 * 119.62433 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47274 * 270.28175 * 1 2 3 26 26 H 1.09005 * 109.47136 * 30.27916 * 1 2 3 27 27 H 1.08999 * 109.47688 * 150.27937 * 1 2 3 28 28 H 1.07996 * 120.05515 * 359.96769 * 3 2 1 29 29 H 0.97003 * 120.00362 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.05552 * 180.02562 * 13 4 3 31 31 H 1.08000 * 119.95234 * 180.02562 * 14 13 4 32 32 H 1.08001 * 125.08488 * 359.96101 * 17 16 15 33 33 H 1.08007 * 120.01116 * 0.02562 * 20 19 18 34 34 H 1.07998 * 119.66882 * 180.02562 * 21 20 19 35 35 H 1.08003 * 119.89082 * 180.02562 * 22 21 20 36 36 H 1.07998 * 120.18962 * 179.74230 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1867 1.1798 0.0000 4 6 3.5965 1.1783 -0.0058 5 6 4.3045 2.3970 -0.0113 6 1 3.8428 3.2915 0.3798 7 6 5.6053 2.4477 -0.5235 8 7 6.0391 1.4910 -1.3040 9 14 6.7231 3.8813 -0.0934 10 1 7.5688 3.5172 1.0717 11 1 7.5914 4.1979 -1.2557 12 1 5.8976 5.0682 0.2457 13 6 4.2959 -0.0460 -0.0057 14 6 3.6078 -1.2204 0.0006 15 6 2.2063 -1.2141 0.0059 16 6 1.4646 -2.4905 0.0126 17 6 1.4534 -3.4277 0.9978 18 8 0.6622 -4.4510 0.6431 19 6 0.1169 -4.2486 -0.5741 20 6 -0.7500 -4.9955 -1.3626 21 6 -1.1439 -4.5191 -2.5948 22 6 -0.6839 -3.2963 -3.0604 23 6 0.1763 -2.5409 -2.2930 24 6 0.5817 -3.0125 -1.0476 25 1 -0.3634 0.0051 1.0276 26 1 -0.3634 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6468 2.1151 -0.0005 29 1 6.9410 1.5264 -1.6594 30 1 5.3759 -0.0519 -0.0097 31 1 4.1426 -2.1587 0.0011 32 1 2.0000 -3.3585 1.9267 33 1 -1.1156 -5.9486 -1.0098 34 1 -1.8181 -5.1035 -3.2033 35 1 -1.0009 -2.9348 -4.0275 36 1 0.5375 -1.5907 -2.6577 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239063844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:30 Heat of formation + Delta-G solvation = 22.270403 kcal Electronic energy + Delta-G solvation = -20224.181015 eV Core-core repulsion = 17217.118649 eV Total energy + Delta-G solvation = -3007.062367 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.24484 -39.64581 -38.66733 -36.09013 -33.99374 -32.99961 -31.62874 -31.10442 -29.95409 -27.59577 -26.92004 -24.23138 -23.23696 -23.03383 -22.03136 -20.81812 -18.84520 -18.18526 -18.01383 -17.19990 -16.94620 -16.59010 -15.79171 -15.54828 -15.37999 -14.97886 -14.62116 -14.45405 -14.21780 -13.78310 -13.57607 -13.37670 -13.32119 -13.02586 -12.83607 -12.72489 -12.59121 -12.31737 -12.19885 -11.85565 -11.50594 -11.35499 -11.00281 -10.75536 -9.53527 -9.43075 -9.20051 -8.83715 -8.66636 -6.35720 0.02570 0.44521 0.80294 1.15236 1.36949 1.41646 1.51240 1.61643 1.94641 2.18465 2.65441 2.83339 3.61103 3.72172 3.77525 4.16824 4.24700 4.32806 4.38490 4.46664 4.51632 4.60906 4.66844 4.73763 4.84706 4.99195 5.03700 5.08067 5.12417 5.30309 5.35609 5.40419 5.46781 5.51952 5.58844 5.73010 5.80071 6.04035 6.10229 6.20138 6.31353 6.35175 6.65549 6.89166 7.01048 8.27457 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.031468 B = 0.004142 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.570537 B = 6758.315362 C = 6890.700400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.040 4.040 3 C -0.244 4.244 4 C 0.090 3.910 5 C -0.493 4.493 6 H 0.078 0.922 7 C 0.037 3.963 8 N -0.820 5.820 9 Si 0.984 3.016 10 H -0.262 1.262 11 H -0.267 1.267 12 H -0.257 1.257 13 C -0.194 4.194 14 C -0.083 4.083 15 C -0.164 4.164 16 C -0.112 4.112 17 C -0.010 4.010 18 O -0.200 6.200 19 C 0.024 3.976 20 C -0.112 4.112 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.090 4.090 24 C -0.139 4.139 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.290 0.710 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.229 0.771 33 H 0.156 0.844 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 -9.153 -0.987 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.040 4.040 3 C -0.264 4.264 4 C 0.087 3.913 5 C -0.522 4.522 6 H 0.096 0.904 7 C -0.179 4.179 8 N -0.445 5.445 9 Si 0.804 3.196 10 H -0.186 1.186 11 H -0.191 1.191 12 H -0.181 1.181 13 C -0.213 4.213 14 C -0.101 4.101 15 C -0.165 4.165 16 C -0.113 4.113 17 C -0.074 4.074 18 O -0.101 6.101 19 C -0.023 4.023 20 C -0.131 4.131 21 C -0.107 4.107 22 C -0.153 4.153 23 C -0.108 4.108 24 C -0.140 4.140 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.245 0.755 33 H 0.173 0.827 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.660 -9.458 -0.992 13.555 hybrid contribution 1.143 1.054 0.118 1.559 sum -8.516 -8.404 -0.874 11.996 Atomic orbital electron populations 1.20768 0.91262 1.02178 1.01830 1.19471 0.95511 0.92012 0.97029 1.20693 0.93819 0.96413 1.15451 1.17996 0.91961 0.93707 0.87597 1.19826 0.99427 0.96136 1.36823 0.90429 1.26800 0.99303 1.00148 0.91674 1.69909 1.18705 1.33764 1.22115 0.85169 0.77633 0.77811 0.78985 1.18616 1.19144 1.18064 1.20885 0.99076 0.92212 1.09142 1.20644 0.93270 0.96759 0.99463 1.17433 0.91405 0.89758 1.17939 1.19876 1.01062 0.96099 0.94294 1.24610 0.96347 0.85856 1.00622 1.83848 1.52765 1.42329 1.31201 1.20073 0.99984 0.96362 0.85859 1.20347 0.97862 1.00872 0.93972 1.21340 0.99312 0.95719 0.94362 1.21386 0.97812 0.95307 1.00790 1.20693 0.97638 0.99985 0.92477 1.20140 1.01008 0.95973 0.96866 0.91513 0.91827 0.91605 0.88505 0.89957 0.88078 0.88165 0.75452 0.82670 0.80914 0.82882 0.87218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.83 9.60 71.24 0.68 -3.14 16 2 C -0.04 -1.82 5.87 -19.89 -0.12 -1.93 16 3 C -0.24 -12.27 9.36 22.46 0.21 -12.06 16 4 C 0.09 4.93 5.57 -21.27 -0.12 4.81 16 5 C -0.49 -26.75 9.02 23.33 0.21 -26.54 16 6 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 7 C 0.04 1.84 5.12 85.24 0.44 2.28 16 8 N -0.82 -43.05 10.96 21.82 0.24 -42.82 16 9 Si 0.98 37.96 29.60 68.60 2.03 39.99 16 10 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 11 H -0.27 -9.77 7.11 99.48 0.71 -9.07 16 12 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 13 C -0.19 -10.41 8.62 22.46 0.19 -10.21 16 14 C -0.08 -4.01 9.71 22.24 0.22 -3.79 16 15 C -0.16 -7.39 5.82 -19.88 -0.12 -7.50 16 16 C -0.11 -4.33 4.83 -18.88 -0.09 -4.42 16 17 C -0.01 -0.34 11.98 67.29 0.81 0.47 16 18 O -0.20 -6.39 10.55 -6.82 -0.07 -6.47 16 19 C 0.02 0.75 7.39 22.94 0.17 0.92 16 20 C -0.11 -2.61 10.06 22.35 0.22 -2.39 16 21 C -0.09 -1.76 10.01 22.29 0.22 -1.53 16 22 C -0.14 -3.18 10.04 22.28 0.22 -2.95 16 23 C -0.09 -2.88 9.03 22.40 0.20 -2.68 16 24 C -0.14 -4.94 5.20 -20.10 -0.10 -5.04 16 25 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 26 H 0.06 2.16 8.08 -2.38 -0.02 2.14 16 27 H 0.07 2.35 4.90 -2.39 -0.01 2.34 16 28 H 0.10 4.63 8.06 -2.91 -0.02 4.60 16 29 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 30 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 31 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16 32 H 0.23 6.04 8.06 -2.91 -0.02 6.02 16 33 H 0.16 2.63 8.06 -2.91 -0.02 2.61 16 34 H 0.17 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.11 3.81 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -63.39 309.57 6.55 -56.84 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 1.10 Total: 28.17 kcal Atomic # 6 Polarization: -78.97 SS G_CDS: 3.25 Total: -75.72 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.24 Total: -42.82 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.07 Total: -6.47 kcal Atomic # 14 Polarization: 37.96 SS G_CDS: 2.03 Total: 39.99 kcal Total: -63.39 6.55 -56.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239063844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.112 kcal (2) G-P(sol) polarization free energy of solvation -63.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds