Wall clock time and date at job start Tue Mar 31 2020 00:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36153 * 120.05491 * 2 1 4 4 C 1.40110 * 120.10400 * 180.25437 * 3 2 1 5 5 C 1.47636 * 119.89669 * 179.72173 * 4 3 2 6 6 C 1.35975 * 127.10472 * 309.75196 * 5 4 3 7 7 O 1.34140 * 109.82094 * 179.73857 * 6 5 4 8 8 C 1.34913 * 111.25265 * 0.23941 * 7 6 5 9 9 C 1.38948 * 133.11110 * 180.02562 * 8 7 6 10 10 C 1.37864 * 119.98084 * 180.02562 * 9 8 7 11 11 C 1.38695 * 120.66087 * 359.97438 * 10 9 8 12 12 C 1.37833 * 120.20836 * 0.02562 * 11 10 9 13 13 C 1.39180 * 119.63172 * 359.97438 * 12 11 10 14 14 C 1.40152 * 120.20645 * 359.44478 * 4 3 2 15 15 C 1.36121 * 120.09903 * 0.29775 * 14 4 3 16 16 C 1.40968 * 120.05002 * 179.72313 * 2 1 3 17 17 C 1.40943 * 120.10455 * 0.04128 * 16 2 1 18 18 H 1.08001 * 120.00076 * 333.69869 * 17 16 2 19 19 C 1.39892 * 120.00071 * 153.69470 * 17 16 2 20 20 N 1.30879 * 120.00196 * 343.21483 * 19 17 16 21 21 Si 1.86796 * 120.00058 * 163.21835 * 19 17 16 22 22 H 1.48505 * 109.47659 * 93.69233 * 21 19 17 23 23 H 1.48498 * 109.47204 * 213.69626 * 21 19 17 24 24 H 1.48503 * 109.47244 * 333.69260 * 21 19 17 25 25 H 1.09007 * 109.46642 * 270.28160 * 1 2 3 26 26 H 1.09007 * 109.46991 * 30.27468 * 1 2 3 27 27 H 1.08997 * 109.47345 * 150.27812 * 1 2 3 28 28 H 1.07997 * 119.94944 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.09584 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.01365 * 359.97257 * 9 8 7 31 31 H 1.07997 * 119.67375 * 179.97438 * 10 9 8 32 32 H 1.07997 * 119.89279 * 179.97438 * 11 10 9 33 33 H 1.08001 * 120.18363 * 180.02562 * 12 11 10 34 34 H 1.07993 * 119.94839 * 180.27187 * 14 4 3 35 35 H 1.08007 * 120.04772 * 179.97438 * 15 14 4 36 36 H 0.97001 * 119.99726 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1785 0.0000 4 6 3.5900 1.1797 -0.0054 5 6 4.3248 2.4602 -0.0116 6 6 4.1284 3.5146 -0.8473 7 8 4.9842 4.5017 -0.5431 8 6 5.7819 4.1567 0.4887 9 6 6.8042 4.8158 1.1603 10 6 7.4562 4.1937 2.2037 11 6 7.1024 2.9108 2.5944 12 6 6.0909 2.2408 1.9404 13 6 5.4257 2.8590 0.8857 14 6 4.2962 -0.0309 0.0010 15 6 3.6230 -1.2139 0.0062 16 6 2.2130 -1.2202 0.0059 17 6 1.5115 -2.4427 0.0109 18 1 0.5153 -2.4919 0.4250 19 6 2.1058 -3.5922 -0.5204 20 7 3.1478 -3.4872 -1.3053 21 14 1.4119 -5.2773 -0.1099 22 1 0.4474 -5.6855 -1.1627 23 1 2.5185 -6.2652 -0.0424 24 1 0.7182 -5.2208 1.2019 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8876 -0.5181 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6490 2.1138 -0.0004 29 1 3.3910 3.5533 -1.6354 30 1 7.0887 5.8148 0.8646 31 1 8.2504 4.7104 2.7220 32 1 7.6217 2.4351 3.4132 33 1 5.8155 1.2420 2.2453 34 1 5.3761 -0.0251 0.0012 35 1 4.1680 -2.1464 0.0107 36 1 3.5596 -4.2843 -1.6740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239063990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:40 Heat of formation + Delta-G solvation = 32.497340 kcal Electronic energy + Delta-G solvation = -20023.729633 eV Core-core repulsion = 17017.110739 eV Total energy + Delta-G solvation = -3006.618894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.92905 -37.86425 -37.52218 -34.15692 -32.75652 -31.15997 -30.20019 -29.69729 -28.42099 -26.17342 -24.91371 -23.05388 -21.91758 -21.71784 -20.10607 -19.08477 -17.33755 -16.80708 -16.65259 -15.68176 -15.45678 -15.36869 -14.26208 -13.87708 -13.79922 -13.59428 -13.33264 -12.70449 -12.62031 -12.37811 -12.02421 -11.85890 -11.72031 -11.56070 -11.22830 -11.18035 -11.06958 -10.75430 -10.70326 -10.42687 -9.68146 -9.58283 -9.38600 -9.22034 -8.36443 -7.93665 -7.46323 -7.10586 -6.85454 -4.42447 1.19659 1.60050 2.38996 2.88917 3.00510 3.02991 3.05868 3.18862 3.27069 3.83851 3.99514 4.50565 4.88652 4.97193 5.12918 5.39862 5.47936 5.62075 5.67385 5.85524 5.99641 6.10592 6.22464 6.26213 6.36826 6.47672 6.58203 6.62916 6.67129 6.68833 6.83211 6.92212 6.95144 7.03948 7.19560 7.30617 7.54861 7.59631 7.84719 7.97212 8.04558 8.19987 8.52203 8.77455 8.88247 10.05148 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.004255 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.920898 B = 6578.148689 C = 7159.486323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.201 4.201 3 C -0.064 4.064 4 C -0.173 4.173 5 C -0.071 4.071 6 C -0.037 4.037 7 O -0.199 6.199 8 C 0.047 3.953 9 C -0.117 4.117 10 C -0.101 4.101 11 C -0.149 4.149 12 C -0.059 4.059 13 C -0.120 4.120 14 C -0.077 4.077 15 C -0.166 4.166 16 C 0.122 3.878 17 C -0.450 4.450 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.784 5.784 21 Si 0.907 3.093 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.259 1.259 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.204 0.796 30 H 0.125 0.875 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.308 8.184 3.546 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.202 4.202 3 C -0.083 4.083 4 C -0.174 4.174 5 C -0.073 4.073 6 C -0.101 4.101 7 O -0.101 6.101 8 C 0.000 4.000 9 C -0.136 4.136 10 C -0.119 4.119 11 C -0.167 4.167 12 C -0.078 4.078 13 C -0.121 4.121 14 C -0.096 4.096 15 C -0.186 4.186 16 C 0.119 3.881 17 C -0.479 4.479 18 H 0.101 0.899 19 C -0.144 4.144 20 N -0.409 5.409 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.183 1.183 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.221 0.779 30 H 0.143 0.857 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.135 0.865 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.477 8.278 3.258 9.959 hybrid contribution -0.243 -0.946 0.026 0.977 sum 4.234 7.332 3.285 9.082 Atomic orbital electron populations 1.20406 0.93447 1.00613 0.99676 1.19402 0.94450 0.92985 1.13398 1.20166 0.92307 0.96060 0.99737 1.17317 0.91781 0.88883 1.19459 1.20033 0.96359 0.95631 0.95246 1.24141 0.96736 0.87015 1.02190 1.83840 1.41371 1.41205 1.43724 1.19626 0.95165 0.94598 0.90635 1.19822 0.95872 1.00388 0.97476 1.20801 0.99524 0.95250 0.96373 1.20976 0.98966 0.95382 1.01375 1.20637 0.94036 0.99785 0.93292 1.20031 0.98868 0.94455 0.98703 1.20401 0.97105 0.92209 0.99870 1.20937 0.94488 0.96476 1.06668 1.17551 0.91814 0.91659 0.87066 1.19599 1.02078 0.92505 1.33673 0.89946 1.25978 0.94151 1.01613 0.92673 1.69852 1.18080 1.31952 1.20981 0.86306 0.79513 0.80781 0.80247 1.19431 1.19951 1.18292 0.94036 0.94343 0.92013 0.89357 0.77904 0.85691 0.85384 0.85744 0.85384 0.89534 0.86501 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.70 9.39 36.01 0.34 -1.36 16 2 C -0.20 -4.71 5.90 -104.34 -0.62 -5.33 16 3 C -0.06 -1.43 9.29 -39.63 -0.37 -1.79 16 4 C -0.17 -3.84 5.82 -104.64 -0.61 -4.45 16 5 C -0.07 -1.42 5.77 -103.09 -0.59 -2.01 16 6 C -0.04 -0.65 11.91 29.92 0.36 -0.29 16 7 O -0.20 -3.46 10.55 4.45 0.05 -3.41 16 8 C 0.05 0.81 7.39 -38.54 -0.28 0.52 16 9 C -0.12 -1.62 10.06 -39.46 -0.40 -2.02 16 10 C -0.10 -1.25 10.01 -39.55 -0.40 -1.64 16 11 C -0.15 -2.00 10.04 -39.56 -0.40 -2.40 16 12 C -0.06 -0.98 10.09 -39.38 -0.40 -1.38 16 13 C -0.12 -2.22 6.36 -104.99 -0.67 -2.89 16 14 C -0.08 -1.80 9.70 -39.62 -0.38 -2.19 16 15 C -0.17 -4.21 8.61 -39.30 -0.34 -4.55 16 16 C 0.12 3.11 5.56 -106.79 -0.59 2.52 16 17 C -0.45 -11.31 8.08 -37.94 -0.31 -11.62 16 18 H 0.08 1.98 6.88 -52.49 -0.36 1.62 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.78 -19.53 11.00 55.54 0.61 -18.92 16 21 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 22 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.26 6.77 -51.93 -0.35 0.91 16 28 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.20 2.93 8.06 -52.49 -0.42 2.51 16 30 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 33 H 0.13 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 35 H 0.12 3.04 6.24 -52.48 -0.33 2.72 16 36 H 0.28 6.39 8.30 -40.82 -0.34 6.06 16 LS Contribution 312.38 15.07 4.71 4.71 Total: -1.00 -27.45 312.38 -9.39 -36.84 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.98 Total: 7.11 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: -5.75 Total: -39.16 kcal Atomic # 7 Polarization: -19.53 SS G_CDS: 0.61 Total: -18.92 kcal Atomic # 8 Polarization: -3.46 SS G_CDS: 0.05 Total: -3.41 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.45 -9.39 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239063990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.339 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds