Wall clock time and date at job start Tue Mar 31 2020 00:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36153 * 120.05491 * 2 1 4 4 C 1.40110 * 120.10400 * 180.25437 * 3 2 1 5 5 C 1.47636 * 119.89669 * 179.72173 * 4 3 2 6 6 C 1.35975 * 127.10472 * 309.75196 * 5 4 3 7 7 O 1.34140 * 109.82094 * 179.73857 * 6 5 4 8 8 C 1.34913 * 111.25265 * 0.23941 * 7 6 5 9 9 C 1.38948 * 133.11110 * 180.02562 * 8 7 6 10 10 C 1.37864 * 119.98084 * 180.02562 * 9 8 7 11 11 C 1.38695 * 120.66087 * 359.97438 * 10 9 8 12 12 C 1.37833 * 120.20836 * 0.02562 * 11 10 9 13 13 C 1.39180 * 119.63172 * 359.97438 * 12 11 10 14 14 C 1.40152 * 120.20645 * 359.44478 * 4 3 2 15 15 C 1.36121 * 120.09903 * 0.29775 * 14 4 3 16 16 C 1.40968 * 120.05002 * 179.72313 * 2 1 3 17 17 C 1.40943 * 120.10455 * 0.04128 * 16 2 1 18 18 H 1.08001 * 120.00076 * 333.69869 * 17 16 2 19 19 C 1.39892 * 120.00071 * 153.69470 * 17 16 2 20 20 N 1.30879 * 120.00196 * 343.21483 * 19 17 16 21 21 Si 1.86796 * 120.00058 * 163.21835 * 19 17 16 22 22 H 1.48505 * 109.47659 * 93.69233 * 21 19 17 23 23 H 1.48498 * 109.47204 * 213.69626 * 21 19 17 24 24 H 1.48503 * 109.47244 * 333.69260 * 21 19 17 25 25 H 1.09007 * 109.46642 * 270.28160 * 1 2 3 26 26 H 1.09007 * 109.46991 * 30.27468 * 1 2 3 27 27 H 1.08997 * 109.47345 * 150.27812 * 1 2 3 28 28 H 1.07997 * 119.94944 * 359.97438 * 3 2 1 29 29 H 1.07997 * 125.09584 * 359.97438 * 6 5 4 30 30 H 1.08005 * 120.01365 * 359.97257 * 9 8 7 31 31 H 1.07997 * 119.67375 * 179.97438 * 10 9 8 32 32 H 1.07997 * 119.89279 * 179.97438 * 11 10 9 33 33 H 1.08001 * 120.18363 * 180.02562 * 12 11 10 34 34 H 1.07993 * 119.94839 * 180.27187 * 14 4 3 35 35 H 1.08007 * 120.04772 * 179.97438 * 15 14 4 36 36 H 0.97001 * 119.99726 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1889 1.1785 0.0000 4 6 3.5900 1.1797 -0.0054 5 6 4.3248 2.4602 -0.0116 6 6 4.1284 3.5146 -0.8473 7 8 4.9842 4.5017 -0.5431 8 6 5.7819 4.1567 0.4887 9 6 6.8042 4.8158 1.1603 10 6 7.4562 4.1937 2.2037 11 6 7.1024 2.9108 2.5944 12 6 6.0909 2.2408 1.9404 13 6 5.4257 2.8590 0.8857 14 6 4.2962 -0.0309 0.0010 15 6 3.6230 -1.2139 0.0062 16 6 2.2130 -1.2202 0.0059 17 6 1.5115 -2.4427 0.0109 18 1 0.5153 -2.4919 0.4250 19 6 2.1058 -3.5922 -0.5204 20 7 3.1478 -3.4872 -1.3053 21 14 1.4119 -5.2773 -0.1099 22 1 0.4474 -5.6855 -1.1627 23 1 2.5185 -6.2652 -0.0424 24 1 0.7182 -5.2208 1.2019 25 1 -0.3633 0.0051 1.0277 26 1 -0.3633 0.8876 -0.5181 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6490 2.1138 -0.0004 29 1 3.3910 3.5533 -1.6354 30 1 7.0887 5.8148 0.8646 31 1 8.2504 4.7104 2.7220 32 1 7.6217 2.4351 3.4132 33 1 5.8155 1.2420 2.2453 34 1 5.3761 -0.0251 0.0012 35 1 4.1680 -2.1464 0.0107 36 1 3.5596 -4.2843 -1.6740 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239063990.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:30 Heat of formation + Delta-G solvation = 21.058649 kcal Electronic energy + Delta-G solvation = -20024.225652 eV Core-core repulsion = 17017.110739 eV Total energy + Delta-G solvation = -3007.114912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 9.78 seconds Orbital eigenvalues (eV) -43.23216 -39.65457 -38.67681 -35.88160 -34.33067 -32.82006 -31.54776 -31.08626 -29.88952 -27.88514 -26.64893 -24.28885 -23.39869 -23.11691 -21.80112 -20.61065 -19.14565 -18.05284 -18.02713 -17.18239 -16.95975 -16.56693 -15.88085 -15.58316 -15.27272 -14.94235 -14.63645 -14.35158 -14.25880 -13.68365 -13.64670 -13.23877 -13.17636 -12.98896 -12.84445 -12.80693 -12.66517 -12.36202 -12.17206 -11.83038 -11.41631 -11.26069 -11.02709 -10.87195 -9.56178 -9.42229 -9.27530 -8.77916 -8.60463 -6.29791 -0.01207 0.42036 0.75993 1.16298 1.37141 1.40177 1.52609 1.70809 1.93138 2.19298 2.69808 2.83026 3.61002 3.71083 3.76217 4.14582 4.23092 4.36737 4.43258 4.46721 4.51566 4.59162 4.71081 4.72938 4.93408 5.01195 5.03804 5.14682 5.25731 5.33372 5.37093 5.37750 5.46671 5.53579 5.57604 5.75375 5.79235 6.01251 6.14870 6.19672 6.30364 6.36145 6.66835 6.92201 7.03730 8.29968 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.026945 B = 0.004255 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.920898 B = 6578.148689 C = 7159.486323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.212 4.212 3 C -0.074 4.074 4 C -0.159 4.159 5 C -0.119 4.119 6 C -0.014 4.014 7 O -0.200 6.200 8 C 0.024 3.976 9 C -0.113 4.113 10 C -0.089 4.089 11 C -0.136 4.136 12 C -0.092 4.092 13 C -0.146 4.146 14 C -0.088 4.088 15 C -0.188 4.188 16 C 0.089 3.911 17 C -0.481 4.481 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.822 5.822 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.257 1.257 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.114 0.886 29 H 0.231 0.769 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.155 0.845 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.978 10.236 4.392 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.214 4.214 3 C -0.092 4.092 4 C -0.160 4.160 5 C -0.120 4.120 6 C -0.078 4.078 7 O -0.101 6.101 8 C -0.022 4.022 9 C -0.131 4.131 10 C -0.107 4.107 11 C -0.154 4.154 12 C -0.110 4.110 13 C -0.147 4.147 14 C -0.106 4.106 15 C -0.207 4.207 16 C 0.086 3.914 17 C -0.510 4.510 18 H 0.103 0.897 19 C -0.181 4.181 20 N -0.447 5.447 21 Si 0.800 3.200 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.180 1.180 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.132 0.868 29 H 0.247 0.753 30 H 0.174 0.826 31 H 0.192 0.808 32 H 0.173 0.827 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.153 10.351 4.110 12.271 hybrid contribution -0.281 -1.337 -0.182 1.378 sum 4.872 9.015 3.928 10.974 Atomic orbital electron populations 1.20390 0.91205 1.01356 1.00657 1.19856 0.96369 0.92716 1.12430 1.20468 0.92490 0.96738 0.99498 1.17567 0.92211 0.89598 1.16671 1.20041 0.98428 0.95594 0.97956 1.24572 0.95952 0.85919 1.01326 1.83844 1.41419 1.40891 1.43983 1.20094 0.96409 0.94595 0.91144 1.20360 0.94295 1.01593 0.96892 1.21363 0.99512 0.94496 0.95333 1.21399 0.97202 0.95776 1.00977 1.20739 0.96045 0.99874 0.94341 1.20199 0.99207 0.95694 0.99630 1.20498 0.97342 0.92478 1.00297 1.20886 0.94936 0.96371 1.08544 1.17899 0.92102 0.93025 0.88362 1.19808 1.02594 0.93406 1.35198 0.89728 1.26806 0.94281 1.05083 0.91913 1.69917 1.19523 1.33194 1.22087 0.85226 0.78860 0.75875 0.80005 1.18591 1.19348 1.18036 0.92826 0.91878 0.92890 0.86782 0.75263 0.82553 0.80776 0.82740 0.86961 0.89293 0.88384 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.16 9.39 71.24 0.67 -2.49 16 2 C -0.21 -10.14 5.90 -19.68 -0.12 -10.26 16 3 C -0.07 -3.28 9.29 22.24 0.21 -3.08 16 4 C -0.16 -7.24 5.82 -19.88 -0.12 -7.36 16 5 C -0.12 -4.74 5.77 -18.87 -0.11 -4.85 16 6 C -0.01 -0.46 11.91 67.29 0.80 0.34 16 7 O -0.20 -6.58 10.55 -7.01 -0.07 -6.65 16 8 C 0.02 0.79 7.39 22.94 0.17 0.96 16 9 C -0.11 -2.72 10.06 22.35 0.22 -2.49 16 10 C -0.09 -1.81 10.01 22.29 0.22 -1.58 16 11 C -0.14 -3.28 10.04 22.28 0.22 -3.05 16 12 C -0.09 -3.03 10.09 22.40 0.23 -2.81 16 13 C -0.15 -5.41 6.36 -20.10 -0.13 -5.53 16 14 C -0.09 -4.32 9.70 22.24 0.22 -4.11 16 15 C -0.19 -10.10 8.61 22.45 0.19 -9.91 16 16 C 0.09 4.73 5.56 -21.27 -0.12 4.62 16 17 C -0.48 -25.19 8.08 23.33 0.19 -25.00 16 18 H 0.08 4.21 6.88 -2.91 -0.02 4.19 16 19 C 0.03 1.72 5.14 85.24 0.44 2.16 16 20 N -0.82 -42.83 11.00 21.82 0.24 -42.59 16 21 Si 0.98 37.45 29.59 68.60 2.03 39.48 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 23 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.06 2.15 8.08 -2.38 -0.02 2.13 16 27 H 0.05 2.18 6.77 -2.39 -0.02 2.16 16 28 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.23 6.16 8.06 -2.91 -0.02 6.14 16 30 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 31 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 34 H 0.09 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.10 5.51 6.24 -2.91 -0.02 5.49 16 36 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 Total: -1.00 -62.95 312.38 6.48 -56.47 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 1.09 Total: 27.74 kcal Atomic # 6 Polarization: -77.64 SS G_CDS: 3.19 Total: -74.44 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.24 Total: -42.59 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.07 Total: -6.65 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 2.03 Total: 39.48 kcal Total: -62.95 6.48 -56.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239063990.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.525 kcal (2) G-P(sol) polarization free energy of solvation -62.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.78 seconds