Wall clock time and date at job start Mon Mar 30 2020 23:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99637 * 2 1 4 4 H 1.48505 * 109.47200 * 269.99576 * 3 2 1 5 5 H 1.48492 * 109.47623 * 29.99706 * 3 2 1 6 6 H 1.48497 * 109.47192 * 150.00123 * 3 2 1 7 7 C 1.37870 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00219 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.38321 * 119.87760 * 90.00274 * 10 9 7 12 12 C 1.38025 * 120.12518 * 179.97438 * 11 10 9 13 13 C 1.39331 * 119.87335 * 359.97438 * 12 11 10 14 14 C 1.48396 * 120.12061 * 180.02562 * 13 12 11 15 15 C 1.39825 * 119.99408 * 359.97438 * 14 13 12 16 16 C 1.37563 * 120.57535 * 179.97438 * 15 14 13 17 17 C 1.39052 * 120.12222 * 0.02562 * 16 15 14 18 18 O 1.34864 * 133.24687 * 179.97438 * 17 16 15 19 19 C 1.34428 * 110.91788 * 179.97438 * 18 17 16 20 20 C 1.33977 * 110.17569 * 0.02562 * 19 18 17 21 21 C 1.40542 * 119.52175 * 359.97438 * 17 16 15 22 22 C 1.38858 * 119.99877 * 179.97438 * 14 13 12 23 23 C 1.39336 * 119.76334 * 0.27574 * 13 12 11 24 24 C 1.38023 * 119.87295 * 359.44781 * 23 13 12 25 25 H 0.96994 * 119.99993 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46798 * 60.00231 * 9 7 2 27 27 H 1.08991 * 109.47245 * 299.99843 * 9 7 2 28 28 H 1.07999 * 119.93902 * 359.97438 * 11 10 9 29 29 H 1.08000 * 120.06383 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.70635 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.93939 * 179.97438 * 16 15 14 32 32 H 1.08003 * 124.91640 * 180.02562 * 19 18 17 33 33 H 1.08000 * 126.91288 * 179.97438 * 20 19 18 34 34 H 1.08007 * 120.24662 * 0.04271 * 22 14 13 35 35 H 1.08000 * 120.06833 * 179.70340 * 23 13 12 36 36 H 1.07998 * 119.94097 * 180.24722 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.6781 -4.1683 1.1999 12 6 3.5746 -5.2177 1.2059 13 6 4.0282 -5.7498 0.0007 14 6 4.9917 -6.8785 0.0007 15 6 5.4463 -7.4095 1.2117 16 6 6.3390 -8.4560 1.2257 17 6 6.7992 -8.9967 0.0301 18 8 7.6537 -9.9981 -0.2628 19 6 7.7795 -10.1481 -1.5928 20 6 7.0152 -9.2533 -2.2331 21 6 6.3452 -8.4665 -1.1898 22 6 5.4417 -7.4072 -1.2018 23 6 3.5780 -5.2150 -1.2046 24 6 2.6770 -4.1694 -1.1988 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 2.3255 -3.7554 2.1335 29 1 3.9232 -5.6262 2.1429 30 1 5.0928 -6.9948 2.1442 31 1 6.6836 -8.8579 2.1669 32 1 8.4061 -10.8836 -2.0754 33 1 6.9125 -9.1344 -3.3016 34 1 5.0936 -6.9996 -2.1395 35 1 3.9300 -5.6205 -2.1416 36 1 2.3243 -3.7566 -2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240423071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:21 Heat of formation + Delta-G solvation = 41.682462 kcal Electronic energy + Delta-G solvation = -19308.814302 eV Core-core repulsion = 16302.593706 eV Total energy + Delta-G solvation = -3006.220597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.49292 -39.22008 -37.43554 -33.65356 -32.94902 -32.03525 -30.62783 -29.65916 -29.22956 -26.67853 -23.97331 -23.33146 -22.02901 -21.65473 -21.12361 -20.09461 -17.55141 -17.27103 -16.45371 -16.23785 -16.18812 -14.99650 -14.69303 -14.46123 -13.95264 -13.80764 -13.41821 -13.32835 -12.97706 -12.94178 -12.60440 -12.41414 -12.01248 -11.60915 -11.35418 -11.17261 -11.05240 -10.69119 -10.54801 -10.34199 -10.16979 -9.67334 -9.51829 -8.91077 -8.45770 -8.38129 -8.35832 -7.39413 -6.07235 -4.11670 0.81153 0.94983 2.00437 2.20074 2.30331 2.66801 3.28730 3.35114 3.39339 3.70081 4.29393 4.37849 4.54045 4.56994 4.77987 4.91951 5.10794 5.15422 5.26212 5.28233 5.40418 5.45150 5.56018 5.77398 5.93661 5.99004 6.06210 6.11285 6.18077 6.27486 6.45637 6.49865 6.56996 6.69420 7.03474 7.06871 7.12742 7.12998 7.45935 7.65077 7.79559 7.88318 8.27554 8.93697 9.52490 11.02392 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.003032 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.604052 B = 9232.483574 C = 9367.560777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.045 3.955 10 C -0.023 4.023 11 C -0.124 4.124 12 C -0.107 4.107 13 C -0.087 4.087 14 C -0.033 4.033 15 C -0.089 4.089 16 C -0.105 4.105 17 C 0.039 3.961 18 O -0.199 6.199 19 C 0.001 3.999 20 C -0.210 4.210 21 C -0.128 4.128 22 C -0.074 4.074 23 C -0.107 4.107 24 C -0.124 4.124 25 H 0.262 0.738 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.206 0.794 33 H 0.157 0.843 34 H 0.131 0.869 35 H 0.114 0.886 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -18.688 -1.438 22.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.076 0.924 9 C 0.008 3.992 10 C -0.023 4.023 11 C -0.142 4.142 12 C -0.125 4.125 13 C -0.087 4.087 14 C -0.033 4.033 15 C -0.107 4.107 16 C -0.123 4.123 17 C -0.008 4.008 18 O -0.101 6.101 19 C -0.064 4.064 20 C -0.229 4.229 21 C -0.129 4.129 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.142 4.142 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.139 0.861 29 H 0.133 0.867 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.222 0.778 33 H 0.174 0.826 34 H 0.149 0.851 35 H 0.132 0.868 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 12.557 -18.719 -1.226 22.574 hybrid contribution 0.458 1.003 -0.294 1.141 sum 13.016 -17.716 -1.520 22.036 Atomic orbital electron populations 1.69955 1.06043 1.26888 1.50391 1.25012 0.94893 0.99291 0.95119 0.86525 0.79842 0.83078 0.78215 1.20562 1.21133 1.19768 1.21044 0.93066 0.89784 1.51173 0.92423 1.18405 0.92614 0.89645 0.98515 1.20819 0.95249 0.94341 0.91926 1.21044 0.98215 0.96407 0.98536 1.21083 0.97891 0.97010 0.96492 1.18419 0.99390 0.96920 0.93941 1.18719 0.96670 0.95522 0.92430 1.21040 0.96204 0.95089 0.98326 1.19796 0.99916 0.98015 0.94564 1.19675 0.94509 0.90867 0.95704 1.83986 1.54648 1.46506 1.24926 1.23896 1.01415 1.01083 0.79956 1.22540 1.01803 0.98880 0.99715 1.19864 1.01078 0.99240 0.92679 1.20605 0.95816 0.94477 0.98279 1.21089 0.97842 0.97036 0.96545 1.21042 0.98181 0.96454 0.98541 0.92792 0.95214 0.95180 0.86095 0.86652 0.84338 0.85094 0.77781 0.82568 0.85143 0.86769 0.86133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.51 -14.20 9.09 -34.44 -0.31 -14.51 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.04 1.14 5.10 -29.03 -0.15 0.99 16 10 C -0.02 -0.50 5.07 -104.56 -0.53 -1.03 16 11 C -0.12 -2.35 9.68 -39.63 -0.38 -2.74 16 12 C -0.11 -1.74 9.43 -39.25 -0.37 -2.11 16 13 C -0.09 -1.39 5.88 -104.90 -0.62 -2.01 16 14 C -0.03 -0.47 5.87 -104.89 -0.62 -1.09 16 15 C -0.09 -1.10 9.40 -39.23 -0.37 -1.47 16 16 C -0.10 -1.22 10.05 -39.53 -0.40 -1.62 16 17 C 0.04 0.50 7.41 -38.41 -0.28 0.22 16 18 O -0.20 -2.31 10.58 3.81 0.04 -2.27 16 19 C 0.00 0.01 11.96 29.23 0.35 0.36 16 20 C -0.21 -2.11 11.14 -37.60 -0.42 -2.53 16 21 C -0.13 -1.65 6.39 -105.18 -0.67 -2.32 16 22 C -0.07 -0.99 9.47 -38.98 -0.37 -1.36 16 23 C -0.11 -1.78 9.42 -39.25 -0.37 -2.15 16 24 C -0.12 -2.37 9.68 -39.63 -0.38 -2.76 16 25 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 27 H 0.03 0.79 8.08 -51.93 -0.42 0.38 16 28 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.12 1.53 6.19 -52.49 -0.32 1.20 16 30 H 0.14 1.45 6.18 -52.49 -0.32 1.12 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.21 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.57 6.20 -52.48 -0.33 1.24 16 35 H 0.11 1.58 6.20 -52.49 -0.33 1.26 16 36 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -31.25 312.49 -9.32 -40.57 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.79 Total: 0.64 kcal Atomic # 6 Polarization: -28.58 SS G_CDS: -5.99 Total: -34.57 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.74 Total: -25.44 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.25 -9.32 -40.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240423071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.248 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds