Wall clock time and date at job start Mon Mar 30 2020 23:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99637 * 2 1 4 4 H 1.48505 * 109.47200 * 269.99576 * 3 2 1 5 5 H 1.48492 * 109.47623 * 29.99706 * 3 2 1 6 6 H 1.48497 * 109.47192 * 150.00123 * 3 2 1 7 7 C 1.37870 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00219 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.50698 * 109.47033 * 179.97438 * 9 7 2 11 11 C 1.38321 * 119.87760 * 90.00274 * 10 9 7 12 12 C 1.38025 * 120.12518 * 179.97438 * 11 10 9 13 13 C 1.39331 * 119.87335 * 359.97438 * 12 11 10 14 14 C 1.48396 * 120.12061 * 180.02562 * 13 12 11 15 15 C 1.39825 * 119.99408 * 359.97438 * 14 13 12 16 16 C 1.37563 * 120.57535 * 179.97438 * 15 14 13 17 17 C 1.39052 * 120.12222 * 0.02562 * 16 15 14 18 18 O 1.34864 * 133.24687 * 179.97438 * 17 16 15 19 19 C 1.34428 * 110.91788 * 179.97438 * 18 17 16 20 20 C 1.33977 * 110.17569 * 0.02562 * 19 18 17 21 21 C 1.40542 * 119.52175 * 359.97438 * 17 16 15 22 22 C 1.38858 * 119.99877 * 179.97438 * 14 13 12 23 23 C 1.39336 * 119.76334 * 0.27574 * 13 12 11 24 24 C 1.38023 * 119.87295 * 359.44781 * 23 13 12 25 25 H 0.96994 * 119.99993 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46798 * 60.00231 * 9 7 2 27 27 H 1.08991 * 109.47245 * 299.99843 * 9 7 2 28 28 H 1.07999 * 119.93902 * 359.97438 * 11 10 9 29 29 H 1.08000 * 120.06383 * 180.02562 * 12 11 10 30 30 H 1.08000 * 119.70635 * 0.02562 * 15 14 13 31 31 H 1.07997 * 119.93939 * 179.97438 * 16 15 14 32 32 H 1.08003 * 124.91640 * 180.02562 * 19 18 17 33 33 H 1.08000 * 126.91288 * 179.97438 * 20 19 18 34 34 H 1.08007 * 120.24662 * 0.04271 * 22 14 13 35 35 H 1.08000 * 120.06833 * 179.70340 * 23 13 12 36 36 H 1.07998 * 119.94097 * 180.24722 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2303 -3.6445 0.0005 11 6 2.6781 -4.1683 1.1999 12 6 3.5746 -5.2177 1.2059 13 6 4.0282 -5.7498 0.0007 14 6 4.9917 -6.8785 0.0007 15 6 5.4463 -7.4095 1.2117 16 6 6.3390 -8.4560 1.2257 17 6 6.7992 -8.9967 0.0301 18 8 7.6537 -9.9981 -0.2628 19 6 7.7795 -10.1481 -1.5928 20 6 7.0152 -9.2533 -2.2331 21 6 6.3452 -8.4665 -1.1898 22 6 5.4417 -7.4072 -1.2018 23 6 3.5780 -5.2150 -1.2046 24 6 2.6770 -4.1694 -1.1988 25 1 -0.4850 0.8400 -0.0004 26 1 0.6248 -2.5570 -0.8898 27 1 0.6241 -2.5567 0.8902 28 1 2.3255 -3.7554 2.1335 29 1 3.9232 -5.6262 2.1429 30 1 5.0928 -6.9948 2.1442 31 1 6.6836 -8.8579 2.1669 32 1 8.4061 -10.8836 -2.0754 33 1 6.9125 -9.1344 -3.3016 34 1 5.0936 -6.9996 -2.1395 35 1 3.9300 -5.6205 -2.1416 36 1 2.3243 -3.7566 -2.1323 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240423071.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:41:20 Heat of formation + Delta-G solvation = 26.612068 kcal Electronic energy + Delta-G solvation = -19309.467804 eV Core-core repulsion = 16302.593706 eV Total energy + Delta-G solvation = -3006.874098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.32246 -40.49375 -38.55764 -35.50842 -33.83073 -33.58585 -31.94055 -31.05628 -30.18689 -28.30055 -25.52995 -24.51611 -23.39883 -22.66980 -22.11101 -21.47250 -18.55127 -18.41473 -18.21123 -17.45709 -17.02985 -16.64081 -15.99479 -15.89702 -15.10024 -15.00506 -14.58221 -14.50698 -14.41972 -13.97872 -13.87329 -13.59644 -13.42577 -13.25870 -12.92366 -12.69870 -12.59209 -12.34764 -12.12462 -11.57667 -11.49676 -11.39467 -11.15895 -10.61522 -10.20038 -9.76795 -9.19551 -8.71890 -8.19577 -6.34801 -0.22528 0.01254 0.59657 0.99109 1.39646 1.40287 1.48552 1.52092 1.90184 2.38680 2.65119 3.09482 3.17731 3.46579 3.66451 3.76341 4.03518 4.11019 4.15525 4.28853 4.34079 4.42070 4.48971 4.65210 4.71303 4.77302 4.92459 5.03561 5.10226 5.25503 5.27025 5.30904 5.35751 5.40960 5.50234 5.57405 5.67391 5.75061 5.80253 6.06991 6.09837 6.19923 6.24470 6.77977 7.33936 8.88043 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.003032 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.604052 B = 9232.483574 C = 9367.560777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.055 3.945 10 C -0.060 4.060 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.073 4.073 14 C -0.056 4.056 15 C -0.092 4.092 16 C -0.104 4.104 17 C 0.023 3.977 18 O -0.208 6.208 19 C 0.015 3.985 20 C -0.229 4.229 21 C -0.148 4.148 22 C -0.080 4.080 23 C -0.107 4.107 24 C -0.134 4.134 25 H 0.266 0.734 26 H 0.003 0.997 27 H 0.005 0.995 28 H 0.119 0.881 29 H 0.151 0.849 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.178 0.822 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.444 -20.495 -1.503 25.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.018 3.982 10 C -0.060 4.060 11 C -0.151 4.151 12 C -0.120 4.120 13 C -0.073 4.073 14 C -0.056 4.056 15 C -0.110 4.110 16 C -0.122 4.122 17 C -0.024 4.024 18 O -0.110 6.110 19 C -0.049 4.049 20 C -0.247 4.247 21 C -0.149 4.149 22 C -0.098 4.098 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.137 0.863 29 H 0.168 0.832 30 H 0.175 0.825 31 H 0.174 0.826 32 H 0.268 0.732 33 H 0.196 0.804 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.423 -20.539 -1.295 25.718 hybrid contribution -0.308 1.332 -0.316 1.403 sum 15.116 -19.207 -1.610 24.495 Atomic orbital electron populations 1.70078 1.07660 1.27992 1.51273 1.25927 0.95775 1.03114 0.94557 0.85436 0.78602 0.78396 0.78581 1.19693 1.20405 1.19027 1.21368 0.93063 0.91223 1.51011 0.92789 1.18130 0.92944 0.91205 0.95933 1.20511 0.96672 0.94822 0.93985 1.21079 0.99067 0.97421 0.97545 1.21367 0.96620 0.95752 0.98272 1.18712 0.98451 0.96622 0.93530 1.18689 0.97450 0.95742 0.93715 1.21243 0.96176 0.95201 0.98361 1.20096 0.99174 0.97435 0.95475 1.20016 0.94854 0.91307 0.96198 1.84005 1.54324 1.46091 1.26577 1.24825 1.00506 1.00856 0.78683 1.22888 1.02218 0.99070 1.00549 1.20232 1.01191 0.99389 0.94042 1.20748 0.95937 0.94729 0.98397 1.21326 0.96849 0.96003 0.98265 1.21045 0.99095 0.97482 0.97585 0.92525 0.97836 0.97675 0.86296 0.83191 0.82534 0.82588 0.73221 0.80443 0.84428 0.84041 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.29 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.25 5.46 84.65 0.46 0.72 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.50 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.53 -30.45 9.09 25.60 0.23 -30.22 16 8 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.05 2.96 5.10 29.10 0.15 3.11 16 10 C -0.06 -2.67 5.07 -19.83 -0.10 -2.77 16 11 C -0.13 -5.15 9.68 22.24 0.22 -4.94 16 12 C -0.10 -3.22 9.43 22.48 0.21 -3.00 16 13 C -0.07 -2.25 5.88 -20.04 -0.12 -2.37 16 14 C -0.06 -1.47 5.87 -20.04 -0.12 -1.59 16 15 C -0.09 -2.05 9.40 22.49 0.21 -1.83 16 16 C -0.10 -2.15 10.05 22.31 0.22 -1.92 16 17 C 0.02 0.54 7.41 23.03 0.17 0.71 16 18 O -0.21 -4.21 10.58 -9.29 -0.10 -4.31 16 19 C 0.02 0.21 11.96 66.85 0.80 1.01 16 20 C -0.23 -3.90 11.14 23.55 0.26 -3.64 16 21 C -0.15 -3.48 6.39 -20.22 -0.13 -3.61 16 22 C -0.08 -2.01 9.47 22.66 0.21 -1.79 16 23 C -0.11 -3.47 9.42 22.48 0.21 -3.26 16 24 C -0.13 -5.28 9.68 22.24 0.22 -5.06 16 25 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 26 H 0.00 0.19 8.08 -2.38 -0.02 0.17 16 27 H 0.00 0.28 8.08 -2.39 -0.02 0.26 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.15 3.57 6.19 -2.91 -0.02 3.55 16 30 H 0.16 2.76 6.18 -2.91 -0.02 2.75 16 31 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.25 0.76 8.06 -2.91 -0.02 0.74 16 33 H 0.18 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.14 3.07 6.20 -2.91 -0.02 3.05 16 35 H 0.14 3.72 6.20 -2.91 -0.02 3.70 16 36 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -70.03 312.49 6.43 -63.60 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: 1.10 Total: 10.68 kcal Atomic # 6 Polarization: -63.58 SS G_CDS: 3.11 Total: -60.47 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: 0.28 Total: -56.00 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.10 Total: -4.31 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.03 6.43 -63.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240423071.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.214 kcal (2) G-P(sol) polarization free energy of solvation -70.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds