Wall clock time and date at job start Tue Mar 31 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36254 * 119.94172 * 2 1 4 4 C 1.40922 * 119.87370 * 180.25511 * 3 2 1 5 5 C 1.41021 * 120.11178 * 179.76218 * 4 3 2 6 6 H 1.08000 * 119.99967 * 204.66385 * 5 4 3 7 7 C 1.39985 * 120.00153 * 24.66202 * 5 4 3 8 8 N 1.30811 * 119.99773 * 17.97956 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 197.97599 * 7 5 4 10 10 H 1.48497 * 109.47425 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46742 * 120.00536 * 9 7 5 12 12 H 1.48500 * 109.47234 * 240.00008 * 9 7 5 13 13 C 1.40955 * 119.77047 * 359.74107 * 4 3 2 14 14 C 1.36220 * 119.87992 * 359.97438 * 13 4 3 15 15 C 1.39933 * 119.93556 * 179.73881 * 2 1 3 16 16 C 1.47962 * 119.88405 * 0.02562 * 15 2 1 17 17 C 1.40065 * 120.02533 * 309.72121 * 16 15 2 18 18 C 1.36468 * 120.69149 * 179.97438 * 17 16 15 19 19 C 1.39141 * 120.27681 * 0.02562 * 18 17 16 20 20 O 1.34835 * 133.25461 * 180.02562 * 19 18 17 21 21 C 1.34443 * 110.93685 * 179.97438 * 20 19 18 22 22 C 1.33965 * 110.19148 * 359.97438 * 21 20 19 23 23 C 1.40641 * 119.54622 * 0.02562 * 19 18 17 24 24 C 1.39166 * 120.19314 * 359.96982 * 23 19 18 25 25 H 1.09002 * 109.46596 * 270.26357 * 1 2 3 26 26 H 1.09001 * 109.46584 * 30.25822 * 1 2 3 27 27 H 1.08993 * 109.47314 * 150.26223 * 1 2 3 28 28 H 1.07996 * 120.06303 * 359.97431 * 3 2 1 29 29 H 0.97002 * 119.99937 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.06043 * 179.97438 * 13 4 3 31 31 H 1.07998 * 119.93959 * 179.97438 * 14 13 4 32 32 H 1.08001 * 119.65295 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.86500 * 180.02562 * 18 17 16 34 34 H 1.07992 * 124.90046 * 180.02562 * 21 20 19 35 35 H 1.08004 * 126.91494 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.32505 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1807 0.0000 4 6 3.5963 1.1790 -0.0054 5 6 4.3052 2.3981 -0.0105 6 1 5.3099 2.4368 -0.4048 7 6 3.7067 3.5580 0.4954 8 7 2.6629 3.4670 1.2786 9 14 4.3986 5.2355 0.0522 10 1 5.5722 5.0665 -0.8418 11 1 3.3568 6.0323 -0.6444 12 1 4.8163 5.9415 1.2901 13 6 4.2947 -0.0453 -0.0053 14 6 3.6051 -1.2200 0.0006 15 6 2.2053 -1.2126 0.0055 16 6 1.4615 -2.4917 0.0108 17 6 0.4389 -2.7039 0.9441 18 6 -0.2563 -3.8781 0.9608 19 6 0.0437 -4.8840 0.0473 20 8 -0.4602 -6.1157 -0.1692 21 6 0.1730 -6.7214 -1.1888 22 6 1.1201 -5.9165 -1.6885 23 6 1.0692 -4.6828 -0.8939 24 6 1.7782 -3.4854 -0.9113 25 1 -0.3632 0.0047 1.0277 26 1 -0.3632 0.8877 -0.5179 27 1 -0.3633 -0.8923 -0.5097 28 1 1.6472 2.1160 -0.0004 29 1 2.2483 4.2708 1.6295 30 1 5.3747 -0.0521 -0.0099 31 1 4.1392 -2.1587 0.0002 32 1 0.1980 -1.9301 1.6580 33 1 -1.0425 -4.0274 1.6860 34 1 -0.0502 -7.7133 -1.5530 35 1 1.7879 -6.1322 -2.5095 36 1 2.5658 -3.3285 -1.6334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240426171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:22 Heat of formation + Delta-G solvation = 34.633192 kcal Electronic energy + Delta-G solvation = -19991.039526 eV Core-core repulsion = 16984.513250 eV Total energy + Delta-G solvation = -3006.526276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.11227 -38.57283 -36.84157 -33.96380 -32.62225 -31.71583 -30.90334 -29.03565 -28.47990 -25.91206 -25.24061 -22.92554 -21.79998 -21.09881 -20.49405 -19.55125 -17.17998 -17.09390 -16.84224 -15.83680 -15.54782 -15.12273 -14.09124 -13.91372 -13.74392 -13.52313 -12.99533 -12.96932 -12.67586 -12.48460 -12.25219 -11.93197 -11.73995 -11.52638 -11.32429 -11.14079 -10.92739 -10.80662 -10.47361 -10.28907 -9.97749 -9.66694 -9.49494 -9.27584 -8.18918 -7.98474 -7.42941 -7.16034 -6.87001 -4.42522 1.25807 1.63164 2.58780 2.69652 3.01131 3.02350 3.04658 3.06648 3.13040 3.84326 4.12805 4.52055 4.70252 4.94146 5.27432 5.42437 5.49835 5.59985 5.72597 5.82837 5.94492 6.04977 6.11750 6.16011 6.33631 6.40654 6.54021 6.60226 6.63302 6.71673 6.84521 6.93882 6.98828 7.03581 7.26787 7.30669 7.45336 7.56412 7.85390 7.97719 8.07278 8.20692 8.53328 8.77743 8.88895 10.04434 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.043178 B = 0.003737 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.315509 B = 7490.010345 C = 7896.625873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.048 4.048 3 C -0.167 4.167 4 C 0.119 3.881 5 C -0.453 4.453 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.782 5.782 9 Si 0.909 3.091 10 H -0.259 1.259 11 H -0.271 1.271 12 H -0.273 1.273 13 C -0.232 4.232 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.005 3.995 17 C -0.089 4.089 18 C -0.110 4.110 19 C 0.025 3.975 20 O -0.202 6.202 21 C -0.007 4.007 22 C -0.211 4.211 23 C -0.128 4.128 24 C -0.088 4.088 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.119 0.881 29 H 0.282 0.718 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.201 0.799 35 H 0.152 0.848 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -10.523 -2.607 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.048 4.048 3 C -0.187 4.187 4 C 0.116 3.884 5 C -0.481 4.481 6 H 0.098 0.902 7 C -0.144 4.144 8 N -0.406 5.406 9 Si 0.733 3.267 10 H -0.183 1.183 11 H -0.196 1.196 12 H -0.199 1.199 13 C -0.252 4.252 14 C -0.081 4.081 15 C -0.203 4.203 16 C 0.005 3.995 17 C -0.107 4.107 18 C -0.128 4.128 19 C -0.022 4.022 20 O -0.104 6.104 21 C -0.072 4.072 22 C -0.231 4.231 23 C -0.129 4.129 24 C -0.106 4.106 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.218 0.782 35 H 0.170 0.830 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.085 -10.465 -2.296 11.860 hybrid contribution 0.478 0.716 -0.248 0.896 sum -4.607 -9.750 -2.544 11.079 Atomic orbital electron populations 1.20786 0.93834 1.00928 1.00726 1.19219 0.93724 0.92755 0.99145 1.20856 0.94258 0.96116 1.07430 1.17684 0.92053 0.92095 0.86574 1.19671 1.01367 0.92420 1.34668 0.90153 1.25982 0.94192 1.01678 0.92577 1.69832 1.17982 1.31581 1.21205 0.86251 0.80136 0.80936 0.79414 1.18267 1.19566 1.19870 1.20650 0.97756 0.92557 1.14205 1.20288 0.92616 0.96502 0.98737 1.17823 0.92262 0.89666 1.20523 1.18834 0.94203 0.93531 0.92928 1.20973 0.95530 0.95676 0.98530 1.19517 1.02750 0.91475 0.99059 1.19650 0.96999 0.85476 1.00045 1.83932 1.54355 1.25909 1.46210 1.23775 0.95038 0.98701 0.89685 1.22501 1.03102 0.93752 1.03698 1.19875 0.99123 0.95817 0.98037 1.20708 0.99718 0.91141 0.99077 0.92518 0.92913 0.92782 0.86301 0.90674 0.88888 0.89297 0.84854 0.85839 0.78216 0.82988 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 8.43 36.01 0.30 -1.69 16 2 C -0.05 -1.08 5.83 -104.70 -0.61 -1.70 16 3 C -0.17 -4.20 8.26 -39.28 -0.32 -4.53 16 4 C 0.12 3.07 5.57 -106.80 -0.60 2.48 16 5 C -0.45 -11.62 9.03 -37.87 -0.34 -11.96 16 6 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 7 C 0.07 1.81 5.13 -17.33 -0.09 1.72 16 8 N -0.78 -19.43 10.96 55.55 0.61 -18.82 16 9 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 10 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 11 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 12 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 13 C -0.23 -5.58 9.73 -39.28 -0.38 -5.96 16 14 C -0.06 -1.40 9.43 -39.66 -0.37 -1.78 16 15 C -0.20 -4.39 5.49 -104.63 -0.57 -4.96 16 16 C 0.01 0.10 4.70 -104.87 -0.49 -0.39 16 17 C -0.09 -1.52 7.81 -39.54 -0.31 -1.83 16 18 C -0.11 -1.71 9.99 -39.89 -0.40 -2.11 16 19 C 0.02 0.40 7.42 -38.34 -0.28 0.12 16 20 O -0.20 -2.97 10.58 3.85 0.04 -2.93 16 21 C -0.01 -0.08 11.95 29.23 0.35 0.27 16 22 C -0.21 -2.78 11.14 -37.61 -0.42 -3.20 16 23 C -0.13 -2.11 6.39 -105.17 -0.67 -2.79 16 24 C -0.09 -1.57 9.55 -38.87 -0.37 -1.94 16 25 H 0.06 0.99 7.48 -51.93 -0.39 0.60 16 26 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 27 H 0.05 0.96 6.44 -51.93 -0.33 0.63 16 28 H 0.12 3.08 6.16 -52.49 -0.32 2.75 16 29 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 30 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.09 1.78 8.03 -52.49 -0.42 1.36 16 32 H 0.13 2.18 6.83 -52.49 -0.36 1.82 16 33 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.20 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.15 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.12 2.10 8.04 -52.49 -0.42 1.68 16 LS Contribution 307.82 15.07 4.64 4.64 Total: -1.00 -27.79 307.82 -9.24 -37.02 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -3.91 Total: 7.42 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: -5.59 Total: -40.26 kcal Atomic # 7 Polarization: -19.43 SS G_CDS: 0.61 Total: -18.82 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.79 -9.24 -37.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240426171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.655 kcal (2) G-P(sol) polarization free energy of solvation -27.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds