Wall clock time and date at job start Tue Mar 31 2020 00:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36254 * 119.94172 * 2 1 4 4 C 1.40922 * 119.87370 * 180.25511 * 3 2 1 5 5 C 1.41021 * 120.11178 * 179.76218 * 4 3 2 6 6 H 1.08000 * 119.99967 * 204.66385 * 5 4 3 7 7 C 1.39985 * 120.00153 * 24.66202 * 5 4 3 8 8 N 1.30811 * 119.99773 * 17.97956 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 197.97599 * 7 5 4 10 10 H 1.48497 * 109.47425 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46742 * 120.00536 * 9 7 5 12 12 H 1.48500 * 109.47234 * 240.00008 * 9 7 5 13 13 C 1.40955 * 119.77047 * 359.74107 * 4 3 2 14 14 C 1.36220 * 119.87992 * 359.97438 * 13 4 3 15 15 C 1.39933 * 119.93556 * 179.73881 * 2 1 3 16 16 C 1.47962 * 119.88405 * 0.02562 * 15 2 1 17 17 C 1.40065 * 120.02533 * 309.72121 * 16 15 2 18 18 C 1.36468 * 120.69149 * 179.97438 * 17 16 15 19 19 C 1.39141 * 120.27681 * 0.02562 * 18 17 16 20 20 O 1.34835 * 133.25461 * 180.02562 * 19 18 17 21 21 C 1.34443 * 110.93685 * 179.97438 * 20 19 18 22 22 C 1.33965 * 110.19148 * 359.97438 * 21 20 19 23 23 C 1.40641 * 119.54622 * 0.02562 * 19 18 17 24 24 C 1.39166 * 120.19314 * 359.96982 * 23 19 18 25 25 H 1.09002 * 109.46596 * 270.26357 * 1 2 3 26 26 H 1.09001 * 109.46584 * 30.25822 * 1 2 3 27 27 H 1.08993 * 109.47314 * 150.26223 * 1 2 3 28 28 H 1.07996 * 120.06303 * 359.97431 * 3 2 1 29 29 H 0.97002 * 119.99937 * 179.97438 * 8 7 5 30 30 H 1.08001 * 120.06043 * 179.97438 * 13 4 3 31 31 H 1.07998 * 119.93959 * 179.97438 * 14 13 4 32 32 H 1.08001 * 119.65295 * 359.97438 * 17 16 15 33 33 H 1.07996 * 119.86500 * 180.02562 * 18 17 16 34 34 H 1.07992 * 124.90046 * 180.02562 * 21 20 19 35 35 H 1.08004 * 126.91494 * 179.97438 * 22 21 20 36 36 H 1.08000 * 120.32505 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1871 1.1807 0.0000 4 6 3.5963 1.1790 -0.0054 5 6 4.3052 2.3981 -0.0105 6 1 5.3099 2.4368 -0.4048 7 6 3.7067 3.5580 0.4954 8 7 2.6629 3.4670 1.2786 9 14 4.3986 5.2355 0.0522 10 1 5.5722 5.0665 -0.8418 11 1 3.3568 6.0323 -0.6444 12 1 4.8163 5.9415 1.2901 13 6 4.2947 -0.0453 -0.0053 14 6 3.6051 -1.2200 0.0006 15 6 2.2053 -1.2126 0.0055 16 6 1.4615 -2.4917 0.0108 17 6 0.4389 -2.7039 0.9441 18 6 -0.2563 -3.8781 0.9608 19 6 0.0437 -4.8840 0.0473 20 8 -0.4602 -6.1157 -0.1692 21 6 0.1730 -6.7214 -1.1888 22 6 1.1201 -5.9165 -1.6885 23 6 1.0692 -4.6828 -0.8939 24 6 1.7782 -3.4854 -0.9113 25 1 -0.3632 0.0047 1.0277 26 1 -0.3632 0.8877 -0.5179 27 1 -0.3633 -0.8923 -0.5097 28 1 1.6472 2.1160 -0.0004 29 1 2.2483 4.2708 1.6295 30 1 5.3747 -0.0521 -0.0099 31 1 4.1392 -2.1587 0.0002 32 1 0.1980 -1.9301 1.6580 33 1 -1.0425 -4.0274 1.6860 34 1 -0.0502 -7.7133 -1.5530 35 1 1.7879 -6.1322 -2.5095 36 1 2.5658 -3.3285 -1.6334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240426171.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:20 Heat of formation + Delta-G solvation = 22.747068 kcal Electronic energy + Delta-G solvation = -19991.554947 eV Core-core repulsion = 16984.513250 eV Total energy + Delta-G solvation = -3007.041697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.24436 -40.18062 -38.34145 -35.71850 -33.85695 -33.33287 -32.47740 -30.33161 -29.99609 -27.61693 -26.91264 -24.30908 -23.16021 -22.32037 -22.06132 -21.24489 -19.02841 -18.27127 -18.04347 -17.18392 -16.96548 -16.66526 -15.70488 -15.52216 -15.12406 -14.96006 -14.53988 -14.35055 -13.93942 -13.91479 -13.64321 -13.53234 -13.29761 -13.11608 -12.81580 -12.76758 -12.61923 -12.37551 -12.01365 -11.78481 -11.42976 -11.27299 -11.09261 -11.04225 -9.69787 -9.25559 -9.14182 -8.85949 -8.64807 -6.32891 0.06957 0.24507 1.01740 1.18467 1.38320 1.50071 1.53332 1.55019 1.96207 2.19380 2.62898 2.88402 3.61007 3.73639 3.81288 4.05326 4.19828 4.36741 4.39793 4.42903 4.53565 4.60815 4.69550 4.79019 4.88726 4.96657 5.02334 5.12444 5.14437 5.28801 5.31816 5.35944 5.48779 5.56950 5.67365 5.70424 5.76444 6.04514 6.11608 6.25580 6.30362 6.36621 6.67206 6.90339 7.02823 8.28245 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.043178 B = 0.003737 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.315509 B = 7490.010345 C = 7896.625873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.057 4.057 3 C -0.190 4.190 4 C 0.087 3.913 5 C -0.493 4.493 6 H 0.076 0.924 7 C 0.036 3.964 8 N -0.814 5.814 9 Si 0.982 3.018 10 H -0.259 1.259 11 H -0.263 1.263 12 H -0.265 1.265 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.192 4.192 16 C -0.019 4.019 17 C -0.097 4.097 18 C -0.101 4.101 19 C 0.013 3.987 20 O -0.207 6.207 21 C 0.016 3.984 22 C -0.231 4.231 23 C -0.143 4.143 24 C -0.095 4.095 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.290 0.710 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.254 0.746 35 H 0.176 0.824 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.066 -12.771 -3.019 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.057 4.057 3 C -0.209 4.209 4 C 0.084 3.916 5 C -0.522 4.522 6 H 0.094 0.906 7 C -0.180 4.180 8 N -0.439 5.439 9 Si 0.803 3.197 10 H -0.182 1.182 11 H -0.188 1.188 12 H -0.189 1.189 13 C -0.269 4.269 14 C -0.088 4.088 15 C -0.193 4.193 16 C -0.019 4.019 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.033 4.033 20 O -0.109 6.109 21 C -0.048 4.048 22 C -0.250 4.250 23 C -0.144 4.144 24 C -0.113 4.113 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.270 0.730 35 H 0.193 0.807 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.445 -12.737 -2.707 14.529 hybrid contribution 0.793 1.061 -0.154 1.333 sum -5.652 -11.675 -2.861 13.283 Atomic orbital electron populations 1.20752 0.91200 1.01613 1.01868 1.19626 0.95842 0.92271 0.97986 1.20834 0.94209 0.96509 1.09376 1.18029 0.92844 0.93002 0.87681 1.19871 1.01769 0.93705 1.36834 0.90599 1.26786 0.94391 1.04986 0.91809 1.69872 1.19176 1.32965 1.21931 0.85156 0.79362 0.75950 0.79250 1.18243 1.18752 1.18925 1.20822 0.98156 0.92899 1.15045 1.20557 0.93284 0.96699 0.98258 1.18169 0.92347 0.90942 1.17807 1.18724 0.95542 0.92746 0.94920 1.20953 0.95384 0.96656 0.98470 1.19751 1.02593 0.90526 0.99050 1.19886 0.97044 0.86330 1.00068 1.83967 1.54606 1.25142 1.47194 1.24802 0.92924 0.99764 0.87310 1.22847 1.04750 0.92642 1.04754 1.20228 0.98892 0.96419 0.98884 1.20714 0.99989 0.91601 0.98965 0.91035 0.92644 0.91558 0.87837 0.89902 0.88547 0.87266 0.84529 0.82998 0.73011 0.80657 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.66 8.43 71.24 0.60 -3.06 16 2 C -0.06 -2.63 5.83 -19.92 -0.12 -2.75 16 3 C -0.19 -9.98 8.26 22.46 0.19 -9.80 16 4 C 0.09 4.74 5.57 -21.27 -0.12 4.62 16 5 C -0.49 -26.66 9.03 23.38 0.21 -26.45 16 6 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 7 C 0.04 1.82 5.13 85.27 0.44 2.26 16 8 N -0.81 -41.97 10.96 21.83 0.24 -41.73 16 9 Si 0.98 37.73 29.60 68.60 2.03 39.76 16 10 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 11 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 12 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 13 C -0.25 -12.56 9.73 22.47 0.22 -12.34 16 14 C -0.07 -3.18 9.43 22.22 0.21 -2.97 16 15 C -0.19 -8.45 5.49 -19.87 -0.11 -8.56 16 16 C -0.02 -0.72 4.70 -20.02 -0.09 -0.81 16 17 C -0.10 -3.17 7.81 22.30 0.17 -3.00 16 18 C -0.10 -2.91 9.99 22.07 0.22 -2.69 16 19 C 0.01 0.40 7.42 23.07 0.17 0.57 16 20 O -0.21 -5.29 10.58 -9.14 -0.10 -5.38 16 21 C 0.02 0.29 11.95 66.85 0.80 1.09 16 22 C -0.23 -5.27 11.14 23.55 0.26 -5.01 16 23 C -0.14 -4.43 6.39 -20.22 -0.13 -4.56 16 24 C -0.09 -3.28 9.55 22.73 0.22 -3.07 16 25 H 0.07 2.45 7.48 -2.39 -0.02 2.43 16 26 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 27 H 0.07 2.30 6.44 -2.39 -0.02 2.28 16 28 H 0.10 5.66 6.16 -2.91 -0.02 5.64 16 29 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 30 H 0.10 4.60 8.06 -2.91 -0.02 4.57 16 31 H 0.11 4.41 8.03 -2.91 -0.02 4.38 16 32 H 0.14 4.31 6.83 -2.91 -0.02 4.29 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.25 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.18 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.12 4.12 8.04 -2.91 -0.02 4.10 16 Total: -1.00 -62.92 307.82 6.41 -56.51 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 1.10 Total: 27.36 kcal Atomic # 6 Polarization: -79.65 SS G_CDS: 3.14 Total: -76.51 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.24 Total: -41.73 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: -0.10 Total: -5.38 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -62.92 6.41 -56.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240426171.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.255 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds