Wall clock time and date at job start Tue Mar 31 2020 00:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36254 * 120.06197 * 2 1 4 4 C 1.39942 * 120.12242 * 180.23158 * 3 2 1 5 5 C 1.47956 * 119.88639 * 179.75658 * 4 3 2 6 6 C 1.40071 * 120.02126 * 359.72968 * 5 4 3 7 7 C 1.36472 * 120.68599 * 179.97438 * 6 5 4 8 8 C 1.39138 * 120.27816 * 0.02562 * 7 6 5 9 9 O 1.34828 * 133.25195 * 180.02562 * 8 7 6 10 10 C 1.34438 * 110.93765 * 179.97438 * 9 8 7 11 11 C 1.33973 * 110.19270 * 0.02562 * 10 9 8 12 12 C 1.40637 * 119.54370 * 359.97438 * 8 7 6 13 13 C 1.39161 * 120.19952 * 359.97438 * 12 8 7 14 14 C 1.39979 * 120.23076 * 359.48391 * 4 3 2 15 15 C 1.36226 * 120.11953 * 0.25402 * 14 4 3 16 16 C 1.40924 * 120.06154 * 179.71715 * 2 1 3 17 17 C 1.41017 * 120.11102 * 0.04033 * 16 2 1 18 18 H 1.08003 * 120.00521 * 333.71637 * 17 16 2 19 19 C 1.39989 * 119.99572 * 153.71588 * 17 16 2 20 20 N 1.30814 * 120.00114 * 343.36785 * 19 17 16 21 21 Si 1.86799 * 120.00017 * 163.37335 * 19 17 16 22 22 H 1.48501 * 109.47232 * 94.84396 * 21 19 17 23 23 H 1.48497 * 109.47348 * 214.84158 * 21 19 17 24 24 H 1.48498 * 109.47301 * 334.84409 * 21 19 17 25 25 H 1.08994 * 109.47256 * 270.28505 * 1 2 3 26 26 H 1.09001 * 109.47000 * 30.28195 * 1 2 3 27 27 H 1.08997 * 109.47489 * 150.27816 * 1 2 3 28 28 H 1.08003 * 119.94157 * 359.96946 * 3 2 1 29 29 H 1.07992 * 119.65685 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.86044 * 180.02562 * 7 6 5 31 31 H 1.08003 * 124.90566 * 180.02562 * 10 9 8 32 32 H 1.07997 * 126.91656 * 179.97438 * 11 10 9 33 33 H 1.07998 * 120.33066 * 179.97438 * 13 12 8 34 34 H 1.07996 * 119.93777 * 180.22714 * 14 4 3 35 35 H 1.07997 * 120.06010 * 179.97438 * 15 14 4 36 36 H 0.96996 * 120.00280 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1793 0.0000 4 6 3.5889 1.1807 -0.0049 5 6 4.3248 2.4643 -0.0103 6 6 3.6212 3.6755 -0.0163 7 6 4.2861 4.8672 -0.0208 8 6 5.6773 4.8944 -0.0201 9 8 6.5818 5.8942 -0.0232 10 6 7.8352 5.4081 -0.0201 11 6 7.8117 4.0686 -0.0154 12 6 6.3945 3.6846 -0.0141 13 6 5.7168 2.4692 -0.0084 14 6 4.2950 -0.0279 0.0011 15 6 3.6224 -1.2125 0.0065 16 6 2.2129 -1.2197 0.0060 17 6 1.5115 -2.4430 0.0112 18 1 0.5151 -2.4926 0.4250 19 6 2.1067 -3.5933 -0.5200 20 7 3.1503 -3.4882 -1.3018 21 14 1.4108 -5.2783 -0.1127 22 1 0.4698 -5.6970 -1.1826 23 1 2.5193 -6.2616 -0.0160 24 1 0.6898 -5.2158 1.1840 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6495 2.1146 -0.0005 29 1 2.5413 3.6661 -0.0173 30 1 3.7303 5.7931 -0.0250 31 1 8.7317 6.0105 -0.0213 32 1 8.6637 3.4049 -0.0125 33 1 6.2655 1.5389 -0.0043 34 1 5.3749 -0.0212 0.0010 35 1 4.1681 -2.1445 0.0107 36 1 3.5630 -4.2852 -1.6696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240426219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:23 Heat of formation + Delta-G solvation = 35.182602 kcal Electronic energy + Delta-G solvation = -19818.570741 eV Core-core repulsion = 16812.068289 eV Total energy + Delta-G solvation = -3006.502452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 4.64 seconds Orbital eigenvalues (eV) -42.04509 -38.49281 -36.95980 -33.90618 -32.53822 -32.07238 -30.46680 -29.23210 -28.42088 -26.30316 -24.83794 -22.86273 -22.19673 -21.06273 -20.31870 -19.36319 -17.51177 -17.06123 -16.62026 -15.77580 -15.51061 -15.23506 -14.20458 -14.06138 -13.48848 -13.24162 -13.04228 -12.79108 -12.72593 -12.54251 -12.15516 -12.03191 -11.80780 -11.50567 -11.23806 -11.15532 -10.94908 -10.67292 -10.56861 -10.41662 -9.93768 -9.64495 -9.42516 -9.32162 -8.40612 -7.96194 -7.49665 -7.04490 -6.87181 -4.44905 1.29735 1.54921 2.63209 2.74096 2.97547 3.00874 3.02252 3.08215 3.14511 3.79022 4.16809 4.64210 4.72290 4.99274 5.31286 5.44644 5.55013 5.55878 5.70487 5.84345 5.95192 6.09443 6.22182 6.25501 6.33997 6.55950 6.59237 6.61248 6.71218 6.75230 6.81917 6.91941 6.95981 7.08140 7.17138 7.34432 7.50987 7.53599 7.82237 7.92868 8.03060 8.14340 8.46596 8.70463 8.82681 9.97690 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.003799 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.896838 B = 7368.329987 C = 8118.822220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.201 4.201 3 C -0.062 4.062 4 C -0.199 4.199 5 C 0.010 3.990 6 C -0.108 4.108 7 C -0.100 4.100 8 C 0.012 3.988 9 O -0.203 6.203 10 C -0.006 4.006 11 C -0.214 4.214 12 C -0.118 4.118 13 C -0.107 4.107 14 C -0.079 4.079 15 C -0.168 4.168 16 C 0.123 3.877 17 C -0.443 4.443 18 H 0.084 0.916 19 C 0.073 3.927 20 N -0.779 5.779 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.258 1.258 25 H 0.042 0.958 26 H 0.039 0.961 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.201 0.799 32 H 0.152 0.848 33 H 0.125 0.875 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.236 8.632 1.592 9.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.202 4.202 3 C -0.080 4.080 4 C -0.200 4.200 5 C 0.010 3.990 6 C -0.126 4.126 7 C -0.119 4.119 8 C -0.034 4.034 9 O -0.105 6.105 10 C -0.071 4.071 11 C -0.233 4.233 12 C -0.119 4.119 13 C -0.125 4.125 14 C -0.097 4.097 15 C -0.187 4.187 16 C 0.120 3.880 17 C -0.471 4.471 18 H 0.102 0.898 19 C -0.146 4.146 20 N -0.402 5.402 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.182 1.182 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.111 0.889 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.217 0.783 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.304 8.743 1.435 9.850 hybrid contribution 0.104 -0.942 0.017 0.948 sum 4.408 7.802 1.453 9.078 Atomic orbital electron populations 1.20414 0.93373 1.00711 0.99747 1.19445 0.94525 0.93015 1.13242 1.20250 0.92719 0.96137 0.98870 1.17970 0.92458 0.90286 1.19303 1.18869 0.91928 0.93161 0.95018 1.20788 1.00011 0.90671 1.01165 1.19462 0.88360 0.98841 1.05191 1.19590 0.91168 0.85287 1.07399 1.83914 1.14546 1.35088 1.76924 1.23769 0.85713 0.94417 1.03208 1.22499 0.95752 0.95201 1.09848 1.19845 0.92667 0.94080 1.05323 1.20569 0.93336 0.95676 1.02919 1.20510 0.97370 0.92453 0.99403 1.20964 0.94482 0.96574 1.06715 1.17592 0.91899 0.91707 0.86797 1.19708 1.02048 0.92437 1.32935 0.89751 1.26032 0.94155 1.01788 0.92673 1.69819 1.17685 1.32181 1.20564 0.86266 0.79578 0.80549 0.80277 1.19365 1.19856 1.18201 0.93931 0.94233 0.92016 0.88890 0.84997 0.85946 0.78256 0.83032 0.85729 0.89054 0.86442 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.39 36.00 0.34 -1.35 16 2 C -0.20 -4.65 5.90 -104.32 -0.62 -5.26 16 3 C -0.06 -1.34 9.00 -39.66 -0.36 -1.70 16 4 C -0.20 -4.38 5.90 -104.63 -0.62 -5.00 16 5 C 0.01 0.21 5.88 -104.87 -0.62 -0.41 16 6 C -0.11 -1.87 9.35 -39.53 -0.37 -2.24 16 7 C -0.10 -1.60 9.99 -39.88 -0.40 -2.00 16 8 C 0.01 0.20 7.42 -38.34 -0.28 -0.09 16 9 O -0.20 -3.09 10.58 3.88 0.04 -3.05 16 10 C -0.01 -0.07 11.95 29.23 0.35 0.28 16 11 C -0.21 -2.96 11.14 -37.60 -0.42 -3.38 16 12 C -0.12 -2.05 6.39 -105.17 -0.67 -2.72 16 13 C -0.11 -1.99 9.48 -38.88 -0.37 -2.36 16 14 C -0.08 -1.81 9.35 -39.65 -0.37 -2.19 16 15 C -0.17 -4.20 8.62 -39.28 -0.34 -4.54 16 16 C 0.12 3.10 5.56 -106.80 -0.59 2.51 16 17 C -0.44 -10.97 8.09 -37.87 -0.31 -11.27 16 18 H 0.08 1.99 6.88 -52.48 -0.36 1.63 16 19 C 0.07 1.73 5.14 -17.33 -0.09 1.64 16 20 N -0.78 -19.06 10.99 55.55 0.61 -18.45 16 21 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.06 1.24 6.77 -51.93 -0.35 0.89 16 28 H 0.09 1.77 6.15 -52.48 -0.32 1.44 16 29 H 0.13 2.06 6.15 -52.49 -0.32 1.73 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.12 2.23 6.18 -52.49 -0.32 1.90 16 34 H 0.09 1.91 6.17 -52.49 -0.32 1.58 16 35 H 0.12 3.01 6.23 -52.49 -0.33 2.68 16 36 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -27.53 304.26 -9.10 -36.64 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -3.58 Total: 7.86 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: -5.73 Total: -40.09 kcal Atomic # 7 Polarization: -19.06 SS G_CDS: 0.61 Total: -18.45 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: 0.04 Total: -3.05 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.53 -9.10 -36.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240426219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.818 kcal (2) G-P(sol) polarization free energy of solvation -27.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.64 seconds