Wall clock time and date at job start Tue Mar 31 2020 00:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36254 * 120.06197 * 2 1 4 4 C 1.39942 * 120.12242 * 180.23158 * 3 2 1 5 5 C 1.47956 * 119.88639 * 179.75658 * 4 3 2 6 6 C 1.40071 * 120.02126 * 359.72968 * 5 4 3 7 7 C 1.36472 * 120.68599 * 179.97438 * 6 5 4 8 8 C 1.39138 * 120.27816 * 0.02562 * 7 6 5 9 9 O 1.34828 * 133.25195 * 180.02562 * 8 7 6 10 10 C 1.34438 * 110.93765 * 179.97438 * 9 8 7 11 11 C 1.33973 * 110.19270 * 0.02562 * 10 9 8 12 12 C 1.40637 * 119.54370 * 359.97438 * 8 7 6 13 13 C 1.39161 * 120.19952 * 359.97438 * 12 8 7 14 14 C 1.39979 * 120.23076 * 359.48391 * 4 3 2 15 15 C 1.36226 * 120.11953 * 0.25402 * 14 4 3 16 16 C 1.40924 * 120.06154 * 179.71715 * 2 1 3 17 17 C 1.41017 * 120.11102 * 0.04033 * 16 2 1 18 18 H 1.08003 * 120.00521 * 333.71637 * 17 16 2 19 19 C 1.39989 * 119.99572 * 153.71588 * 17 16 2 20 20 N 1.30814 * 120.00114 * 343.36785 * 19 17 16 21 21 Si 1.86799 * 120.00017 * 163.37335 * 19 17 16 22 22 H 1.48501 * 109.47232 * 94.84396 * 21 19 17 23 23 H 1.48497 * 109.47348 * 214.84158 * 21 19 17 24 24 H 1.48498 * 109.47301 * 334.84409 * 21 19 17 25 25 H 1.08994 * 109.47256 * 270.28505 * 1 2 3 26 26 H 1.09001 * 109.47000 * 30.28195 * 1 2 3 27 27 H 1.08997 * 109.47489 * 150.27816 * 1 2 3 28 28 H 1.08003 * 119.94157 * 359.96946 * 3 2 1 29 29 H 1.07992 * 119.65685 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.86044 * 180.02562 * 7 6 5 31 31 H 1.08003 * 124.90566 * 180.02562 * 10 9 8 32 32 H 1.07997 * 126.91656 * 179.97438 * 11 10 9 33 33 H 1.07998 * 120.33066 * 179.97438 * 13 12 8 34 34 H 1.07996 * 119.93777 * 180.22714 * 14 4 3 35 35 H 1.07997 * 120.06010 * 179.97438 * 15 14 4 36 36 H 0.96996 * 120.00280 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1793 0.0000 4 6 3.5889 1.1807 -0.0049 5 6 4.3248 2.4643 -0.0103 6 6 3.6212 3.6755 -0.0163 7 6 4.2861 4.8672 -0.0208 8 6 5.6773 4.8944 -0.0201 9 8 6.5818 5.8942 -0.0232 10 6 7.8352 5.4081 -0.0201 11 6 7.8117 4.0686 -0.0154 12 6 6.3945 3.6846 -0.0141 13 6 5.7168 2.4692 -0.0084 14 6 4.2950 -0.0279 0.0011 15 6 3.6224 -1.2125 0.0065 16 6 2.2129 -1.2197 0.0060 17 6 1.5115 -2.4430 0.0112 18 1 0.5151 -2.4926 0.4250 19 6 2.1067 -3.5933 -0.5200 20 7 3.1503 -3.4882 -1.3018 21 14 1.4108 -5.2783 -0.1127 22 1 0.4698 -5.6970 -1.1826 23 1 2.5193 -6.2616 -0.0160 24 1 0.6898 -5.2158 1.1840 25 1 -0.3633 0.0051 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3634 -0.8924 -0.5095 28 1 1.6495 2.1146 -0.0005 29 1 2.5413 3.6661 -0.0173 30 1 3.7303 5.7931 -0.0250 31 1 8.7317 6.0105 -0.0213 32 1 8.6637 3.4049 -0.0125 33 1 6.2655 1.5389 -0.0043 34 1 5.3749 -0.0212 0.0010 35 1 4.1681 -2.1445 0.0107 36 1 3.5630 -4.2852 -1.6696 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240426219.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:19 Heat of formation + Delta-G solvation = 23.390900 kcal Electronic energy + Delta-G solvation = -19819.082068 eV Core-core repulsion = 16812.068289 eV Total energy + Delta-G solvation = -3007.013778 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.23492 -40.11218 -38.44481 -35.62241 -33.76184 -33.68568 -32.12559 -30.55695 -29.91821 -27.94857 -26.50118 -24.23438 -23.71868 -22.26028 -21.86261 -21.00660 -19.22583 -18.33763 -17.89655 -17.16117 -16.96184 -16.74086 -15.72467 -15.58442 -14.97916 -14.81269 -14.49125 -14.36311 -14.07761 -13.78715 -13.63668 -13.45735 -13.36425 -13.10699 -12.83063 -12.78927 -12.54392 -12.24673 -12.09996 -11.88562 -11.34975 -11.13167 -11.11596 -11.04983 -9.96559 -9.27198 -9.15999 -8.75677 -8.56397 -6.27934 0.01181 0.13436 1.12043 1.20401 1.38842 1.50284 1.52958 1.59012 1.96501 2.18462 2.60484 3.02433 3.61213 3.76123 3.80130 4.04860 4.18289 4.29464 4.37135 4.49795 4.51019 4.67101 4.73567 4.79587 4.94995 5.01648 5.05806 5.12599 5.23191 5.30082 5.33267 5.40052 5.42519 5.56578 5.66147 5.72141 5.77098 6.03785 6.14686 6.27521 6.30248 6.35406 6.66090 6.90016 7.03058 8.27358 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.033610 B = 0.003799 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.896838 B = 7368.329987 C = 8118.822220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.215 4.215 3 C -0.071 4.071 4 C -0.193 4.193 5 C -0.018 4.018 6 C -0.112 4.112 7 C -0.094 4.094 8 C 0.002 3.998 9 O -0.206 6.206 10 C 0.019 3.981 11 C -0.236 4.236 12 C -0.140 4.140 13 C -0.117 4.117 14 C -0.093 4.093 15 C -0.192 4.192 16 C 0.089 3.911 17 C -0.477 4.477 18 H 0.087 0.913 19 C 0.034 3.966 20 N -0.818 5.818 21 Si 0.981 3.019 22 H -0.261 1.261 23 H -0.269 1.269 24 H -0.256 1.256 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.255 0.745 32 H 0.174 0.826 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.655 11.200 1.847 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.216 4.216 3 C -0.089 4.089 4 C -0.195 4.195 5 C -0.018 4.018 6 C -0.130 4.130 7 C -0.112 4.112 8 C -0.044 4.044 9 O -0.108 6.108 10 C -0.045 4.045 11 C -0.255 4.255 12 C -0.141 4.141 13 C -0.135 4.135 14 C -0.111 4.111 15 C -0.211 4.211 16 C 0.086 3.914 17 C -0.505 4.505 18 H 0.105 0.895 19 C -0.183 4.183 20 N -0.443 5.443 21 Si 0.802 3.198 22 H -0.186 1.186 23 H -0.193 1.193 24 H -0.180 1.180 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.142 0.858 29 H 0.166 0.834 30 H 0.174 0.826 31 H 0.271 0.729 32 H 0.191 0.809 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.726 11.331 1.691 12.393 hybrid contribution 0.208 -1.384 -0.058 1.401 sum 4.934 9.947 1.633 11.223 Atomic orbital electron populations 1.20397 0.91126 1.01388 1.00786 1.19907 0.96457 0.92775 1.12436 1.20585 0.92810 0.97025 0.98506 1.18319 0.93073 0.91041 1.17028 1.18890 0.92449 0.92996 0.97511 1.20940 1.00852 0.90176 1.01016 1.19789 0.88409 0.99621 1.03365 1.19895 0.91956 0.85625 1.06945 1.83951 1.15480 1.34739 1.76647 1.24802 0.85809 0.94455 0.99472 1.22844 0.94765 0.96543 1.11364 1.20231 0.94900 0.93723 1.05215 1.20641 0.93325 0.96390 1.03147 1.20701 0.98096 0.92593 0.99716 1.20936 0.94968 0.96545 1.08700 1.17956 0.92229 0.93112 0.88064 1.19906 1.02581 0.93341 1.34660 0.89539 1.26853 0.94287 1.05190 0.91921 1.69882 1.19218 1.33357 1.21814 0.85199 0.78881 0.75739 0.80016 1.18610 1.19308 1.17954 0.92604 0.91780 0.93010 0.85824 0.83368 0.82641 0.72905 0.80887 0.86261 0.88044 0.88282 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.13 9.39 71.23 0.67 -2.46 16 2 C -0.21 -10.08 5.90 -19.67 -0.12 -10.20 16 3 C -0.07 -3.10 9.00 22.22 0.20 -2.90 16 4 C -0.19 -8.67 5.90 -19.87 -0.12 -8.78 16 5 C -0.02 -0.71 5.88 -20.02 -0.12 -0.83 16 6 C -0.11 -3.67 9.35 22.30 0.21 -3.46 16 7 C -0.09 -2.74 9.99 22.07 0.22 -2.52 16 8 C 0.00 0.07 7.42 23.07 0.17 0.24 16 9 O -0.21 -5.50 10.58 -9.02 -0.10 -5.60 16 10 C 0.02 0.37 11.95 66.85 0.80 1.17 16 11 C -0.24 -5.88 11.14 23.55 0.26 -5.62 16 12 C -0.14 -4.64 6.39 -20.22 -0.13 -4.77 16 13 C -0.12 -4.37 9.48 22.72 0.22 -4.15 16 14 C -0.09 -4.48 9.35 22.22 0.21 -4.27 16 15 C -0.19 -10.20 8.62 22.47 0.19 -10.01 16 16 C 0.09 4.70 5.56 -21.28 -0.12 4.59 16 17 C -0.48 -24.64 8.09 23.38 0.19 -24.45 16 18 H 0.09 4.24 6.88 -2.91 -0.02 4.22 16 19 C 0.03 1.64 5.14 85.27 0.44 2.08 16 20 N -0.82 -42.11 10.99 21.83 0.24 -41.87 16 21 Si 0.98 36.96 29.59 68.60 2.03 38.99 16 22 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 23 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 27 H 0.05 2.09 6.77 -2.39 -0.02 2.08 16 28 H 0.12 4.47 6.15 -2.91 -0.02 4.46 16 29 H 0.15 4.24 6.15 -2.91 -0.02 4.22 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.26 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.17 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.12 4.41 6.18 -2.91 -0.02 4.40 16 34 H 0.10 4.49 6.17 -2.91 -0.02 4.48 16 35 H 0.10 5.49 6.23 -2.91 -0.02 5.47 16 36 H 0.29 13.47 8.30 -92.71 -0.77 12.70 16 Total: -1.00 -62.86 304.26 6.47 -56.39 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 1.12 Total: 28.44 kcal Atomic # 6 Polarization: -79.52 SS G_CDS: 3.18 Total: -76.34 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.24 Total: -41.87 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.10 Total: -5.60 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -62.86 6.47 -56.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240426219.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.782 kcal (2) G-P(sol) polarization free energy of solvation -62.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds