Wall clock time and date at job start Mon Mar 30 2020 23:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86801 * 120.00147 * 2 1 4 4 H 1.48498 * 109.46759 * 269.99815 * 3 2 1 5 5 H 1.48497 * 109.47165 * 29.99987 * 3 2 1 6 6 H 1.48495 * 109.47173 * 150.00138 * 3 2 1 7 7 C 1.40126 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99841 * 197.92940 * 7 2 1 9 9 C 1.40964 * 120.00042 * 17.92924 * 7 2 1 10 10 C 1.40971 * 120.10881 * 24.68404 * 9 7 2 11 11 C 1.36221 * 119.88099 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.11504 * 359.97438 * 11 10 9 13 13 C 1.47830 * 119.88566 * 180.02562 * 12 11 10 14 14 C 1.39827 * 120.05299 * 359.97438 * 13 12 11 15 15 C 1.36338 * 120.02010 * 180.02562 * 14 13 12 16 16 C 1.40639 * 120.25722 * 0.02562 * 15 14 13 17 17 C 1.39698 * 119.55192 * 359.97438 * 16 15 14 18 18 C 1.36886 * 120.06690 * 359.97438 * 17 16 15 19 19 C 1.51019 * 109.56870 * 179.97438 * 17 16 15 20 20 C 1.53472 * 106.28245 * 0.02562 * 19 17 16 21 21 C 1.47271 * 129.81123 * 179.97438 * 16 15 14 22 22 O 1.21294 * 126.02245 * 0.02562 * 21 16 15 23 23 C 1.40023 * 120.22575 * 0.29569 * 12 11 10 24 24 C 1.36214 * 120.11744 * 359.44659 * 23 12 11 25 25 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.06251 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.94081 * 179.97438 * 11 10 9 28 28 H 1.07992 * 119.99581 * 0.04657 * 14 13 12 29 29 H 1.07993 * 119.86732 * 179.97438 * 15 14 13 30 30 H 1.07993 * 119.89493 * 179.97438 * 18 17 16 31 31 H 1.08996 * 110.09262 * 240.79783 * 19 17 16 32 32 H 1.08998 * 110.09311 * 119.21175 * 19 17 16 33 33 H 1.08995 * 110.26571 * 118.97424 * 20 19 17 34 34 H 1.09006 * 110.26538 * 240.93279 * 20 19 17 35 35 H 1.07999 * 119.93681 * 179.70141 * 23 12 11 36 36 H 1.08001 * 120.06352 * 180.25059 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0463 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5388 1.4401 0.7000 7 6 2.0079 -1.2135 0.0005 8 1 3.0485 -1.2361 0.2885 9 6 1.3544 -2.4048 -0.3747 10 6 0.2260 -2.3569 -1.2184 11 6 -0.4022 -3.5109 -1.5777 12 6 0.0712 -4.7432 -1.1110 13 6 -0.6141 -5.9925 -1.5046 14 6 -1.7336 -5.9435 -2.3410 15 6 -2.3654 -7.0961 -2.7032 16 6 -1.8963 -8.3377 -2.2381 17 6 -0.7776 -8.3825 -1.4026 18 6 -0.1445 -7.2238 -1.0415 19 6 -0.4733 -9.8169 -1.0413 20 6 -1.5327 -10.6729 -1.7486 21 6 -2.4091 -9.6947 -2.4920 22 8 -3.3681 -9.9779 -3.1786 23 6 1.1882 -4.7958 -0.2683 24 6 1.8267 -3.6480 0.0927 25 1 -0.4850 0.8401 0.0004 26 1 -0.1397 -1.4069 -1.5792 27 1 -1.2670 -3.4753 -2.2237 28 1 -2.0976 -4.9926 -2.7006 29 1 -3.2300 -7.0554 -3.3490 30 1 0.7199 -7.2617 -0.3952 31 1 -0.5405 -9.9535 0.0380 32 1 0.5224 -10.0883 -1.3921 33 1 -1.0571 -11.3603 -2.4481 34 1 -2.1207 -11.2268 -1.0167 35 1 1.5465 -5.7485 0.0928 36 1 2.6906 -3.6900 0.7395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242155087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:00 Heat of formation + Delta-G solvation = -6.736650 kcal Electronic energy + Delta-G solvation = -19562.248529 eV Core-core repulsion = 16553.928322 eV Total energy + Delta-G solvation = -3008.320207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.23598 -38.37020 -37.27477 -35.00945 -33.85168 -31.34375 -30.36375 -29.34005 -28.41058 -26.17351 -24.85759 -22.82189 -21.65001 -20.55201 -19.77358 -19.51665 -17.66177 -16.39160 -15.73464 -15.71651 -15.68229 -15.04740 -14.32674 -14.00584 -13.49010 -13.37549 -13.19356 -13.07630 -12.91828 -12.62460 -12.29116 -12.11391 -12.05309 -11.72323 -11.43309 -11.28942 -11.10248 -10.85759 -10.64406 -10.59461 -9.93222 -9.57247 -9.47243 -9.43422 -8.72953 -8.53080 -7.78858 -7.24722 -7.06703 -4.59734 0.82062 1.80966 2.28284 2.77947 2.90109 2.93238 2.95766 3.16181 3.67977 4.09704 4.15101 4.51200 4.60625 4.83304 5.04065 5.23788 5.29009 5.49147 5.54389 5.60216 5.71097 5.77937 5.82343 5.90935 6.03669 6.07137 6.33135 6.43172 6.63250 6.70618 6.75769 6.77525 6.85687 7.01391 7.19442 7.29761 7.35923 7.68684 7.71425 7.77844 7.91711 7.98360 8.32738 8.54034 8.67558 9.80177 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.003302 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.455490 B = 8478.742037 C = 8982.161663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.436 4.436 8 H 0.086 0.914 9 C 0.122 3.878 10 C -0.175 4.175 11 C -0.067 4.067 12 C -0.222 4.222 13 C 0.073 3.927 14 C -0.168 4.168 15 C -0.033 4.033 16 C -0.252 4.252 17 C -0.033 4.033 18 C -0.158 4.158 19 C -0.082 4.082 20 C -0.171 4.171 21 C 0.409 3.591 22 O -0.469 6.469 23 C -0.053 4.053 24 C -0.232 4.232 25 H 0.288 0.712 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.322 -9.289 -0.856 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.104 0.896 9 C 0.119 3.881 10 C -0.194 4.194 11 C -0.085 4.085 12 C -0.223 4.223 13 C 0.073 3.927 14 C -0.186 4.186 15 C -0.051 4.051 16 C -0.253 4.253 17 C -0.033 4.033 18 C -0.176 4.176 19 C -0.118 4.118 20 C -0.209 4.209 21 C 0.290 3.710 22 O -0.346 6.346 23 C -0.071 4.071 24 C -0.251 4.251 25 H 0.099 0.901 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.144 0.856 29 H 0.135 0.865 30 H 0.141 0.859 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.378 -9.264 -1.175 9.346 hybrid contribution 0.344 0.892 0.144 0.966 sum -0.034 -8.372 -1.031 8.436 Atomic orbital electron populations 1.69777 1.07918 1.30228 1.31146 1.26120 0.94851 1.02006 0.91997 0.86180 0.80540 0.79701 0.79732 1.18859 1.19936 1.18241 1.19856 0.98457 0.91289 1.36747 0.89637 1.17791 0.90651 0.92155 0.87547 1.21012 0.99697 0.97068 1.01635 1.20571 0.97688 0.92289 0.97973 1.18053 1.02345 0.90738 1.11147 1.19167 0.91038 0.92768 0.89725 1.20876 0.97769 0.98072 1.01845 1.20678 0.97564 0.90893 0.95985 1.20778 1.02066 0.94681 1.07770 1.20117 0.94021 0.94620 0.94578 1.20316 1.02333 0.90483 1.04487 1.20764 0.99231 0.90612 1.01232 1.22256 0.98450 0.99022 1.01129 1.22433 0.82021 0.89632 0.76926 1.90500 1.25459 1.84867 1.33814 1.20448 0.94275 0.96808 0.95590 1.20701 1.04240 0.92821 1.07362 0.90086 0.86258 0.88730 0.85564 0.86453 0.85895 0.89500 0.89513 0.88011 0.87999 0.88682 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.10 10.96 55.56 0.61 -17.49 16 2 C 0.07 1.64 5.13 -17.31 -0.09 1.55 16 3 Si 0.92 16.85 29.60 -169.99 -5.03 11.82 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 7 C -0.44 -10.52 9.03 -37.84 -0.34 -10.87 16 8 H 0.09 1.96 7.91 -52.49 -0.42 1.54 16 9 C 0.12 2.99 5.57 -106.80 -0.60 2.39 16 10 C -0.18 -4.22 8.63 -39.27 -0.34 -4.56 16 11 C -0.07 -1.47 9.36 -39.64 -0.37 -1.84 16 12 C -0.22 -4.68 5.90 -104.64 -0.62 -5.30 16 13 C 0.07 1.37 5.88 -104.84 -0.62 0.75 16 14 C -0.17 -2.93 9.36 -39.67 -0.37 -3.30 16 15 C -0.03 -0.54 10.05 -39.36 -0.40 -0.94 16 16 C -0.25 -4.02 6.12 -104.78 -0.64 -4.66 16 17 C -0.03 -0.49 6.15 -104.41 -0.64 -1.13 16 18 C -0.16 -2.61 9.37 -39.53 -0.37 -2.98 16 19 C -0.08 -0.86 6.80 -27.48 -0.19 -1.05 16 20 C -0.17 -1.78 6.85 -27.53 -0.19 -1.97 16 21 C 0.41 6.07 7.77 -30.53 -0.24 5.84 16 22 O -0.47 -8.24 18.03 5.54 0.10 -8.14 16 23 C -0.05 -1.11 9.36 -39.64 -0.37 -1.48 16 24 C -0.23 -5.24 9.73 -39.28 -0.38 -5.63 16 25 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 26 H 0.12 2.94 6.16 -52.49 -0.32 2.62 16 27 H 0.09 1.87 6.17 -52.49 -0.32 1.55 16 28 H 0.13 2.08 6.17 -52.49 -0.32 1.76 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.12 1.86 6.16 -52.49 -0.32 1.54 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.71 6.16 -52.49 -0.32 1.39 16 36 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 306.68 15.07 4.62 4.62 Total: -1.00 -26.74 306.68 -10.16 -36.90 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -3.70 Total: 7.43 kcal Atomic # 6 Polarization: -28.39 SS G_CDS: -6.76 Total: -35.15 kcal Atomic # 7 Polarization: -18.10 SS G_CDS: 0.61 Total: -17.49 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.10 Total: -8.14 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -26.74 -10.16 -36.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242155087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.166 kcal (2) G-P(sol) polarization free energy of solvation -26.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds