Wall clock time and date at job start Mon Mar 30 2020 23:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30725 * 1 3 3 Si 1.86801 * 120.00147 * 2 1 4 4 H 1.48498 * 109.46759 * 269.99815 * 3 2 1 5 5 H 1.48497 * 109.47165 * 29.99987 * 3 2 1 6 6 H 1.48495 * 109.47173 * 150.00138 * 3 2 1 7 7 C 1.40126 * 119.99930 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99841 * 197.92940 * 7 2 1 9 9 C 1.40964 * 120.00042 * 17.92924 * 7 2 1 10 10 C 1.40971 * 120.10881 * 24.68404 * 9 7 2 11 11 C 1.36221 * 119.88099 * 180.02562 * 10 9 7 12 12 C 1.40017 * 120.11504 * 359.97438 * 11 10 9 13 13 C 1.47830 * 119.88566 * 180.02562 * 12 11 10 14 14 C 1.39827 * 120.05299 * 359.97438 * 13 12 11 15 15 C 1.36338 * 120.02010 * 180.02562 * 14 13 12 16 16 C 1.40639 * 120.25722 * 0.02562 * 15 14 13 17 17 C 1.39698 * 119.55192 * 359.97438 * 16 15 14 18 18 C 1.36886 * 120.06690 * 359.97438 * 17 16 15 19 19 C 1.51019 * 109.56870 * 179.97438 * 17 16 15 20 20 C 1.53472 * 106.28245 * 0.02562 * 19 17 16 21 21 C 1.47271 * 129.81123 * 179.97438 * 16 15 14 22 22 O 1.21294 * 126.02245 * 0.02562 * 21 16 15 23 23 C 1.40023 * 120.22575 * 0.29569 * 12 11 10 24 24 C 1.36214 * 120.11744 * 359.44659 * 23 12 11 25 25 H 0.97002 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.06251 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.94081 * 179.97438 * 11 10 9 28 28 H 1.07992 * 119.99581 * 0.04657 * 14 13 12 29 29 H 1.07993 * 119.86732 * 179.97438 * 15 14 13 30 30 H 1.07993 * 119.89493 * 179.97438 * 18 17 16 31 31 H 1.08996 * 110.09262 * 240.79783 * 19 17 16 32 32 H 1.08998 * 110.09311 * 119.21175 * 19 17 16 33 33 H 1.08995 * 110.26571 * 118.97424 * 20 19 17 34 34 H 1.09006 * 110.26538 * 240.93279 * 20 19 17 35 35 H 1.07999 * 119.93681 * 179.70141 * 23 12 11 36 36 H 1.08001 * 120.06352 * 180.25059 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4888 2.0463 -1.4001 5 1 1.4388 2.6527 0.7000 6 1 3.5388 1.4401 0.7000 7 6 2.0079 -1.2135 0.0005 8 1 3.0485 -1.2361 0.2885 9 6 1.3544 -2.4048 -0.3747 10 6 0.2260 -2.3569 -1.2184 11 6 -0.4022 -3.5109 -1.5777 12 6 0.0712 -4.7432 -1.1110 13 6 -0.6141 -5.9925 -1.5046 14 6 -1.7336 -5.9435 -2.3410 15 6 -2.3654 -7.0961 -2.7032 16 6 -1.8963 -8.3377 -2.2381 17 6 -0.7776 -8.3825 -1.4026 18 6 -0.1445 -7.2238 -1.0415 19 6 -0.4733 -9.8169 -1.0413 20 6 -1.5327 -10.6729 -1.7486 21 6 -2.4091 -9.6947 -2.4920 22 8 -3.3681 -9.9779 -3.1786 23 6 1.1882 -4.7958 -0.2683 24 6 1.8267 -3.6480 0.0927 25 1 -0.4850 0.8401 0.0004 26 1 -0.1397 -1.4069 -1.5792 27 1 -1.2670 -3.4753 -2.2237 28 1 -2.0976 -4.9926 -2.7006 29 1 -3.2300 -7.0554 -3.3490 30 1 0.7199 -7.2617 -0.3952 31 1 -0.5405 -9.9535 0.0380 32 1 0.5224 -10.0883 -1.3921 33 1 -1.0571 -11.3603 -2.4481 34 1 -2.1207 -11.2268 -1.0167 35 1 1.5465 -5.7485 0.0928 36 1 2.6906 -3.6900 0.7395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242155087.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:44:59 Heat of formation + Delta-G solvation = -17.740458 kcal Electronic energy + Delta-G solvation = -19562.725690 eV Core-core repulsion = 16553.928322 eV Total energy + Delta-G solvation = -3008.797368 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.45710 -39.86489 -38.73668 -36.32205 -35.35822 -32.81235 -31.91030 -30.88493 -29.77559 -27.53418 -26.19784 -24.22264 -23.14735 -22.11553 -21.05523 -20.84752 -19.36521 -17.75468 -17.28041 -16.99108 -16.66080 -16.46312 -15.85453 -15.38638 -14.89932 -14.75612 -14.58852 -14.44236 -14.29879 -14.00153 -13.74295 -13.61654 -13.26346 -12.94975 -12.89568 -12.72402 -12.52932 -12.13711 -12.02827 -11.95432 -11.57735 -11.19393 -11.11265 -10.64055 -10.24584 -9.76345 -9.52543 -8.89686 -8.71316 -6.37664 -0.50320 0.51997 0.81560 1.17700 1.36481 1.40227 1.51372 1.71565 2.15355 2.59276 3.00553 3.07890 3.59107 3.73826 3.81603 3.94047 4.14524 4.21449 4.31972 4.39077 4.42933 4.46472 4.60336 4.81681 4.90797 4.98521 5.04031 5.06968 5.11195 5.15851 5.22311 5.31644 5.41485 5.48883 5.59009 5.66827 5.86691 6.02963 6.08625 6.22218 6.25681 6.55101 6.58498 6.79934 6.93447 8.17652 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.047250 B = 0.003302 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.455490 B = 8478.742037 C = 8982.161663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.254 1.254 7 C -0.478 4.478 8 H 0.085 0.915 9 C 0.091 3.909 10 C -0.198 4.198 11 C -0.078 4.078 12 C -0.217 4.217 13 C 0.045 3.955 14 C -0.172 4.172 15 C -0.046 4.046 16 C -0.259 4.259 17 C -0.027 4.027 18 C -0.155 4.155 19 C -0.077 4.077 20 C -0.160 4.160 21 C 0.405 3.595 22 O -0.501 6.501 23 C -0.057 4.057 24 C -0.247 4.247 25 H 0.294 0.706 26 H 0.103 0.897 27 H 0.108 0.892 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.140 0.860 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.864 -12.460 -0.453 12.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.183 4.183 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.178 1.178 7 C -0.506 4.506 8 H 0.103 0.897 9 C 0.088 3.912 10 C -0.217 4.217 11 C -0.096 4.096 12 C -0.218 4.218 13 C 0.044 3.956 14 C -0.190 4.190 15 C -0.064 4.064 16 C -0.260 4.260 17 C -0.028 4.028 18 C -0.172 4.172 19 C -0.114 4.114 20 C -0.196 4.196 21 C 0.288 3.712 22 O -0.381 6.381 23 C -0.075 4.075 24 C -0.266 4.266 25 H 0.105 0.895 26 H 0.121 0.879 27 H 0.126 0.874 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.158 0.842 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.167 -12.455 -0.768 12.480 hybrid contribution -0.018 1.462 -0.096 1.466 sum 0.150 -10.993 -0.864 11.028 Atomic orbital electron populations 1.69825 1.09303 1.31304 1.32638 1.26924 0.95495 1.04936 0.90975 0.85126 0.79191 0.75360 0.79685 1.18615 1.19128 1.17781 1.20049 0.98778 0.92386 1.39368 0.89656 1.18122 0.91342 0.93376 0.88336 1.20977 1.00748 0.97133 1.02882 1.20797 0.98108 0.92415 0.98285 1.18368 1.02051 0.91403 1.09948 1.19185 0.92051 0.92773 0.91553 1.20943 0.97692 0.98631 1.01751 1.20868 0.97980 0.91164 0.96380 1.21312 1.02301 0.95305 1.07089 1.20553 0.92648 0.96543 0.93013 1.20519 1.02619 0.90111 1.03989 1.20945 1.00517 0.87002 1.02906 1.22329 0.97592 0.98221 1.01490 1.23044 0.81770 0.90064 0.76350 1.90499 1.27035 1.85225 1.35324 1.20762 0.93869 0.97663 0.95177 1.20920 1.04934 0.92919 1.07812 0.89528 0.87914 0.87397 0.85643 0.85635 0.84190 0.86956 0.86871 0.85374 0.85423 0.85367 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.06 10.96 21.86 0.24 -39.82 16 2 C 0.03 1.64 5.13 85.32 0.44 2.07 16 3 Si 0.99 35.62 29.60 68.60 2.03 37.65 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 5 H -0.27 -9.17 7.11 99.48 0.71 -8.47 16 6 H -0.25 -8.88 7.11 99.48 0.71 -8.17 16 7 C -0.48 -24.30 9.03 23.40 0.21 -24.09 16 8 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 9 C 0.09 4.70 5.57 -21.27 -0.12 4.58 16 10 C -0.20 -10.11 8.63 22.47 0.19 -9.92 16 11 C -0.08 -3.56 9.36 22.23 0.21 -3.35 16 12 C -0.22 -9.16 5.90 -19.87 -0.12 -9.28 16 13 C 0.04 1.62 5.88 -20.01 -0.12 1.50 16 14 C -0.17 -5.93 9.36 22.21 0.21 -5.73 16 15 C -0.05 -1.45 10.05 22.41 0.23 -1.23 16 16 C -0.26 -7.55 6.12 -19.96 -0.12 -7.68 16 17 C -0.03 -0.69 6.15 -19.73 -0.12 -0.82 16 18 C -0.15 -4.63 9.37 22.30 0.21 -4.42 16 19 C -0.08 -1.16 6.80 30.11 0.20 -0.96 16 20 C -0.16 -2.41 6.85 30.08 0.21 -2.21 16 21 C 0.40 10.67 7.77 28.13 0.22 10.89 16 22 O -0.50 -16.54 18.03 -3.07 -0.06 -16.59 16 23 C -0.06 -2.35 9.36 22.23 0.21 -2.14 16 24 C -0.25 -11.41 9.73 22.47 0.22 -11.19 16 25 H 0.29 13.08 8.29 -92.71 -0.77 12.31 16 26 H 0.10 5.46 6.16 -2.91 -0.02 5.45 16 27 H 0.11 4.46 6.17 -2.91 -0.02 4.44 16 28 H 0.13 4.21 6.17 -2.91 -0.02 4.19 16 29 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 30 H 0.14 3.67 6.16 -2.91 -0.02 3.65 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.13 4.31 6.16 -2.91 -0.02 4.29 16 36 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 Total: -1.00 -61.48 306.68 5.48 -56.00 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.11 Total: 26.72 kcal Atomic # 6 Polarization: -66.11 SS G_CDS: 2.15 Total: -63.96 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.24 Total: -39.82 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.06 Total: -16.59 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Total: -61.48 5.48 -56.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242155087.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.258 kcal (2) G-P(sol) polarization free energy of solvation -61.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds