Wall clock time and date at job start Mon Mar 30 2020 23:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30705 * 1 3 3 Si 1.86802 * 119.99350 * 2 1 4 4 H 1.48499 * 109.46910 * 269.99974 * 3 2 1 5 5 H 1.48495 * 109.47403 * 30.00168 * 3 2 1 6 6 H 1.48502 * 109.46923 * 150.00198 * 3 2 1 7 7 C 1.40179 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00552 * 164.20903 * 7 2 1 9 9 C 1.40799 * 119.99847 * 344.20379 * 7 2 1 10 10 C 1.40776 * 120.33861 * 333.67395 * 9 7 2 11 11 C 1.36429 * 119.99201 * 179.97438 * 10 9 7 12 12 C 1.38944 * 120.71016 * 0.02562 * 11 10 9 13 13 C 1.38068 * 120.68083 * 359.97438 * 12 11 10 14 14 C 1.39253 * 119.98235 * 359.97438 * 13 12 11 15 15 C 1.47684 * 120.34659 * 179.97438 * 14 13 12 16 16 C 1.39890 * 120.06375 * 130.00332 * 15 14 13 17 17 C 1.36306 * 120.01949 * 180.02562 * 16 15 14 18 18 C 1.40653 * 120.26874 * 359.97438 * 17 16 15 19 19 C 1.39720 * 119.55649 * 0.02562 * 18 17 16 20 20 C 1.36857 * 120.06855 * 359.73615 * 19 18 17 21 21 C 1.51010 * 109.56779 * 180.02562 * 19 18 17 22 22 C 1.53479 * 106.28218 * 359.97438 * 21 19 18 23 23 C 1.47061 * 129.83634 * 179.97438 * 18 17 16 24 24 O 1.21292 * 125.91078 * 0.02562 * 23 18 17 25 25 H 0.96992 * 120.00652 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00007 * 0.24903 * 10 9 7 27 27 H 1.08010 * 119.64829 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.66059 * 179.97438 * 12 11 10 29 29 H 1.08005 * 120.01038 * 180.02562 * 13 12 11 30 30 H 1.08002 * 119.98742 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.86548 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.89516 * 180.25519 * 20 19 18 33 33 H 1.08994 * 110.09820 * 119.19933 * 21 19 18 34 34 H 1.09003 * 110.09280 * 240.79253 * 21 19 18 35 35 H 1.09006 * 110.26278 * 118.97444 * 22 21 19 36 36 H 1.08995 * 110.26822 * 240.93884 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2409 1.6179 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4404 0.7000 7 6 2.0080 -1.2139 -0.0005 8 1 3.0575 -1.2315 -0.2551 9 6 1.3440 -2.4104 0.3309 10 6 0.2104 -2.3870 1.1652 11 6 -0.4280 -3.5505 1.4813 12 6 0.0285 -4.7668 0.9885 13 6 1.1375 -4.8230 0.1680 14 6 1.8102 -3.6526 -0.1738 15 6 2.9977 -3.7034 -1.0504 16 6 3.0853 -2.8579 -2.1614 17 6 4.1814 -2.9059 -2.9702 18 6 5.2283 -3.8032 -2.6928 19 6 5.1375 -4.6463 -1.5824 20 6 4.0381 -4.5929 -0.7690 21 6 6.3749 -5.5078 -1.4988 22 6 7.2581 -5.1090 -2.6890 23 6 6.4902 -4.0302 -3.4131 24 8 6.8518 -3.4500 -4.4150 25 1 -0.4851 0.8399 -0.0004 26 1 -0.1566 -1.4475 1.5513 27 1 -1.2975 -3.5260 2.1216 28 1 -0.4895 -5.6777 1.2500 29 1 1.4827 -5.7743 -0.2093 30 1 2.2837 -2.1674 -2.3788 31 1 4.2463 -2.2522 -3.8275 32 1 3.9726 -5.2429 0.0910 33 1 6.9002 -5.3190 -0.5626 34 1 6.1035 -6.5610 -1.5706 35 1 8.2138 -4.7210 -2.3366 36 1 7.4173 -5.9651 -3.3445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242156328.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:03 Heat of formation + Delta-G solvation = -5.643510 kcal Electronic energy + Delta-G solvation = -20277.087762 eV Core-core repulsion = 17268.814957 eV Total energy + Delta-G solvation = -3008.272805 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16040 -38.29412 -37.13774 -34.67626 -33.88124 -31.36265 -30.13714 -29.38494 -27.86198 -25.90882 -25.06599 -22.74777 -21.32448 -20.76195 -19.69394 -19.35068 -17.43894 -16.17171 -15.77468 -15.65000 -15.31360 -15.05921 -14.28262 -13.86099 -13.54073 -13.41107 -13.30292 -12.90498 -12.70366 -12.59158 -12.21477 -12.03459 -11.76195 -11.52167 -11.31350 -11.19708 -10.96170 -10.83432 -10.58928 -10.42837 -9.78743 -9.62061 -9.37979 -9.34792 -8.47561 -8.28277 -7.55849 -7.33697 -6.93277 -4.52353 0.99523 1.96686 2.49612 2.72763 2.98684 3.03021 3.04226 3.13434 3.80242 4.22039 4.30360 4.47861 4.68338 4.91133 5.10285 5.35861 5.41118 5.52928 5.68488 5.73770 5.83649 5.88921 5.99692 6.06048 6.09344 6.25117 6.40609 6.52451 6.58150 6.83402 6.86138 6.96654 7.04969 7.13871 7.29943 7.41690 7.46023 7.75311 7.77114 7.88027 7.95277 8.09068 8.43826 8.67225 8.77215 9.96841 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.006170 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.524122 B = 4537.131094 C = 5939.209107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.447 4.447 8 H 0.084 0.916 9 C 0.134 3.866 10 C -0.158 4.158 11 C -0.098 4.098 12 C -0.244 4.244 13 C -0.065 4.065 14 C -0.204 4.204 15 C 0.073 3.927 16 C -0.119 4.119 17 C -0.051 4.051 18 C -0.233 4.233 19 C -0.048 4.048 20 C -0.140 4.140 21 C -0.080 4.080 22 C -0.171 4.171 23 C 0.408 3.592 24 O -0.466 6.466 25 H 0.284 0.716 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -5.910 -0.629 9.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.143 4.143 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.476 4.476 8 H 0.102 0.898 9 C 0.131 3.869 10 C -0.177 4.177 11 C -0.116 4.116 12 C -0.263 4.263 13 C -0.083 4.083 14 C -0.206 4.206 15 C 0.073 3.927 16 C -0.137 4.137 17 C -0.069 4.069 18 C -0.234 4.234 19 C -0.048 4.048 20 C -0.158 4.158 21 C -0.117 4.117 22 C -0.208 4.208 23 C 0.289 3.711 24 O -0.343 6.343 25 H 0.096 0.904 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.155 0.845 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.897 -5.442 -1.154 8.860 hybrid contribution 0.115 0.776 0.119 0.794 sum 7.012 -4.665 -1.035 8.485 Atomic orbital electron populations 1.69744 1.07707 1.29766 1.33426 1.25983 0.94719 1.01501 0.92060 0.86339 0.80793 0.80365 0.79649 1.19128 1.19899 1.18218 1.19644 0.97738 0.90726 1.39450 0.89761 1.17516 0.90474 0.90889 0.88037 1.21088 0.98834 0.97077 1.00693 1.20516 0.98419 0.93383 0.99326 1.20290 1.01632 0.96404 1.07981 1.20579 0.95433 0.95465 0.96813 1.18563 1.00481 0.94237 1.07279 1.19037 0.91975 0.90304 0.91379 1.21147 0.98334 0.99952 0.94278 1.20761 0.92068 0.95737 0.98356 1.20836 0.98343 1.03332 1.00854 1.20105 0.94906 0.95548 0.94245 1.20465 0.93032 1.01981 1.00343 1.20741 0.93009 0.99483 0.98431 1.22259 1.00265 0.99835 0.98489 1.22436 0.85587 0.80749 0.82339 1.90501 1.72686 1.48167 1.22961 0.90450 0.86239 0.89347 0.89275 0.89062 0.84514 0.86393 0.86183 0.89589 0.89653 0.87994 0.88017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.79 10.95 55.56 0.61 -18.18 16 2 C 0.08 1.80 5.17 -17.30 -0.09 1.71 16 3 Si 0.90 17.83 29.59 -169.99 -5.03 12.80 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.45 -10.90 7.13 -37.89 -0.27 -11.17 16 8 H 0.08 2.04 6.62 -52.49 -0.35 1.69 16 9 C 0.13 3.29 5.56 -106.55 -0.59 2.70 16 10 C -0.16 -3.83 8.63 -39.28 -0.34 -4.17 16 11 C -0.10 -2.16 9.96 -39.97 -0.40 -2.56 16 12 C -0.24 -5.14 10.03 -39.38 -0.39 -5.54 16 13 C -0.06 -1.37 9.51 -39.27 -0.37 -1.74 16 14 C -0.20 -4.61 5.52 -104.24 -0.58 -5.19 16 15 C 0.07 1.49 4.93 -104.86 -0.52 0.98 16 16 C -0.12 -2.38 7.92 -39.66 -0.31 -2.70 16 17 C -0.05 -0.93 10.05 -39.37 -0.40 -1.33 16 18 C -0.23 -3.98 6.12 -104.86 -0.64 -4.62 16 19 C -0.05 -0.75 6.15 -104.42 -0.64 -1.39 16 20 C -0.14 -2.46 9.46 -39.52 -0.37 -2.84 16 21 C -0.08 -0.90 6.80 -27.48 -0.19 -1.08 16 22 C -0.17 -1.89 6.86 -27.53 -0.19 -2.08 16 23 C 0.41 6.43 7.76 -30.62 -0.24 6.19 16 24 O -0.47 -8.60 18.03 5.55 0.10 -8.50 16 25 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 26 H 0.12 2.98 6.20 -52.49 -0.33 2.66 16 27 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 28 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 29 H 0.09 1.71 8.05 -52.48 -0.42 1.29 16 30 H 0.14 2.88 7.31 -52.49 -0.38 2.50 16 31 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.12 1.94 8.04 -52.49 -0.42 1.52 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -26.78 308.70 -10.19 -36.97 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -3.99 Total: 7.10 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -6.53 Total: -34.83 kcal Atomic # 7 Polarization: -18.79 SS G_CDS: 0.61 Total: -18.18 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.10 Total: -8.50 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.78 -10.19 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242156328.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.326 kcal (2) G-P(sol) polarization free energy of solvation -26.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds