Wall clock time and date at job start Mon Mar 30 2020 23:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30705 * 1 3 3 Si 1.86802 * 119.99350 * 2 1 4 4 H 1.48499 * 109.46910 * 269.99974 * 3 2 1 5 5 H 1.48495 * 109.47403 * 30.00168 * 3 2 1 6 6 H 1.48502 * 109.46923 * 150.00198 * 3 2 1 7 7 C 1.40179 * 120.00473 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00552 * 164.20903 * 7 2 1 9 9 C 1.40799 * 119.99847 * 344.20379 * 7 2 1 10 10 C 1.40776 * 120.33861 * 333.67395 * 9 7 2 11 11 C 1.36429 * 119.99201 * 179.97438 * 10 9 7 12 12 C 1.38944 * 120.71016 * 0.02562 * 11 10 9 13 13 C 1.38068 * 120.68083 * 359.97438 * 12 11 10 14 14 C 1.39253 * 119.98235 * 359.97438 * 13 12 11 15 15 C 1.47684 * 120.34659 * 179.97438 * 14 13 12 16 16 C 1.39890 * 120.06375 * 130.00332 * 15 14 13 17 17 C 1.36306 * 120.01949 * 180.02562 * 16 15 14 18 18 C 1.40653 * 120.26874 * 359.97438 * 17 16 15 19 19 C 1.39720 * 119.55649 * 0.02562 * 18 17 16 20 20 C 1.36857 * 120.06855 * 359.73615 * 19 18 17 21 21 C 1.51010 * 109.56779 * 180.02562 * 19 18 17 22 22 C 1.53479 * 106.28218 * 359.97438 * 21 19 18 23 23 C 1.47061 * 129.83634 * 179.97438 * 18 17 16 24 24 O 1.21292 * 125.91078 * 0.02562 * 23 18 17 25 25 H 0.96992 * 120.00652 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.00007 * 0.24903 * 10 9 7 27 27 H 1.08010 * 119.64829 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.66059 * 179.97438 * 12 11 10 29 29 H 1.08005 * 120.01038 * 180.02562 * 13 12 11 30 30 H 1.08002 * 119.98742 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.86548 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.89516 * 180.25519 * 20 19 18 33 33 H 1.08994 * 110.09820 * 119.19933 * 21 19 18 34 34 H 1.09003 * 110.09280 * 240.79253 * 21 19 18 35 35 H 1.09006 * 110.26278 * 118.97444 * 22 21 19 36 36 H 1.08995 * 110.26822 * 240.93884 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2409 1.6179 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4383 2.6527 0.7000 6 1 3.5385 1.4404 0.7000 7 6 2.0080 -1.2139 -0.0005 8 1 3.0575 -1.2315 -0.2551 9 6 1.3440 -2.4104 0.3309 10 6 0.2104 -2.3870 1.1652 11 6 -0.4280 -3.5505 1.4813 12 6 0.0285 -4.7668 0.9885 13 6 1.1375 -4.8230 0.1680 14 6 1.8102 -3.6526 -0.1738 15 6 2.9977 -3.7034 -1.0504 16 6 3.0853 -2.8579 -2.1614 17 6 4.1814 -2.9059 -2.9702 18 6 5.2283 -3.8032 -2.6928 19 6 5.1375 -4.6463 -1.5824 20 6 4.0381 -4.5929 -0.7690 21 6 6.3749 -5.5078 -1.4988 22 6 7.2581 -5.1090 -2.6890 23 6 6.4902 -4.0302 -3.4131 24 8 6.8518 -3.4500 -4.4150 25 1 -0.4851 0.8399 -0.0004 26 1 -0.1566 -1.4475 1.5513 27 1 -1.2975 -3.5260 2.1216 28 1 -0.4895 -5.6777 1.2500 29 1 1.4827 -5.7743 -0.2093 30 1 2.2837 -2.1674 -2.3788 31 1 4.2463 -2.2522 -3.8275 32 1 3.9726 -5.2429 0.0910 33 1 6.9002 -5.3190 -0.5626 34 1 6.1035 -6.5610 -1.5706 35 1 8.2138 -4.7210 -2.3366 36 1 7.4173 -5.9651 -3.3445 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242156328.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:45:02 Heat of formation + Delta-G solvation = -16.707400 kcal Electronic energy + Delta-G solvation = -20277.567528 eV Core-core repulsion = 17268.814957 eV Total energy + Delta-G solvation = -3008.752571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45441 -39.83476 -38.63871 -35.92562 -35.62958 -32.87397 -31.74890 -30.91096 -29.27617 -27.44550 -26.47509 -24.12998 -22.90364 -22.37523 -20.99982 -20.78826 -19.20201 -17.57590 -17.31677 -16.78094 -16.65195 -16.57508 -15.90087 -15.37306 -14.99681 -14.94914 -14.48350 -14.42119 -14.35785 -13.91003 -13.59932 -13.37421 -13.18018 -12.93640 -12.85436 -12.81572 -12.49454 -12.18775 -12.01376 -11.84837 -11.46214 -11.30085 -11.10498 -10.64412 -9.98927 -9.67527 -9.32346 -9.01158 -8.66282 -6.34155 -0.38621 0.56463 0.89635 1.06454 1.34205 1.43960 1.49601 1.58387 2.15042 2.70762 2.89912 3.09129 3.59576 3.72052 3.86140 4.02870 4.24529 4.29656 4.33588 4.46484 4.51656 4.59732 4.61925 4.81975 4.90853 4.95166 5.07652 5.10256 5.12882 5.21214 5.29285 5.40645 5.47088 5.50138 5.67906 5.75394 5.93887 6.08527 6.12389 6.20324 6.34204 6.54499 6.65895 6.88622 7.00030 8.25410 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.015766 B = 0.006170 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.524122 B = 4537.131094 C = 5939.209107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.042 3.958 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.472 4.472 8 H 0.074 0.926 9 C 0.103 3.897 10 C -0.186 4.186 11 C -0.104 4.104 12 C -0.241 4.241 13 C -0.071 4.071 14 C -0.208 4.208 15 C 0.047 3.953 16 C -0.133 4.133 17 C -0.062 4.062 18 C -0.246 4.246 19 C -0.035 4.035 20 C -0.138 4.138 21 C -0.075 4.075 22 C -0.157 4.157 23 C 0.405 3.595 24 O -0.500 6.500 25 H 0.290 0.710 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.259 -8.426 -0.286 12.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.501 4.501 8 H 0.092 0.908 9 C 0.100 3.900 10 C -0.205 4.205 11 C -0.122 4.122 12 C -0.260 4.260 13 C -0.089 4.089 14 C -0.209 4.209 15 C 0.046 3.954 16 C -0.152 4.152 17 C -0.080 4.080 18 C -0.247 4.247 19 C -0.036 4.036 20 C -0.156 4.156 21 C -0.111 4.111 22 C -0.194 4.194 23 C 0.287 3.713 24 O -0.380 6.380 25 H 0.101 0.899 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.146 0.854 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.232 -7.974 -0.800 12.225 hybrid contribution -0.570 1.397 -0.053 1.510 sum 8.662 -6.577 -0.853 10.909 Atomic orbital electron populations 1.69788 1.08783 1.30684 1.34791 1.26637 0.95346 1.04018 0.91464 0.85437 0.79419 0.76950 0.79511 1.19011 1.18696 1.18511 1.19662 0.97390 0.91752 1.41273 0.90808 1.17858 0.91226 0.92079 0.88819 1.21068 0.99969 0.97363 1.02122 1.20801 0.98838 0.93194 0.99398 1.20686 1.01333 0.97058 1.06908 1.20932 0.95241 0.96147 0.96610 1.18913 1.01159 0.94096 1.06747 1.19074 0.92696 0.92050 0.91542 1.20917 0.98536 1.00226 0.95486 1.20846 0.92353 0.96555 0.98270 1.21319 0.98696 1.02874 1.01771 1.20570 0.95674 0.95019 0.92291 1.20604 0.92704 1.01191 1.01087 1.20935 0.90498 1.00033 0.99630 1.22330 1.00327 0.98716 0.98039 1.23053 0.85215 0.81308 0.81695 1.90495 1.73203 1.49744 1.24511 0.89936 0.87994 0.87237 0.86117 0.86210 0.87252 0.86283 0.84327 0.87063 0.86572 0.85379 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.29 10.95 21.87 0.24 -41.05 16 2 C 0.04 2.05 5.17 85.33 0.44 2.49 16 3 Si 0.97 38.10 29.59 68.60 2.03 40.13 16 4 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.47 -24.40 7.13 23.37 0.17 -24.23 16 8 H 0.07 3.82 6.62 -2.91 -0.02 3.80 16 9 C 0.10 5.29 5.56 -21.11 -0.12 5.17 16 10 C -0.19 -9.42 8.63 22.47 0.19 -9.22 16 11 C -0.10 -4.61 9.96 22.02 0.22 -4.39 16 12 C -0.24 -9.80 10.03 22.40 0.22 -9.57 16 13 C -0.07 -2.94 9.51 22.47 0.21 -2.72 16 14 C -0.21 -9.56 5.52 -19.62 -0.11 -9.67 16 15 C 0.05 1.92 4.93 -20.02 -0.10 1.82 16 16 C -0.13 -5.61 7.92 22.22 0.18 -5.43 16 17 C -0.06 -2.33 10.05 22.41 0.23 -2.11 16 18 C -0.25 -8.06 6.12 -20.02 -0.12 -8.18 16 19 C -0.04 -1.00 6.15 -19.73 -0.12 -1.12 16 20 C -0.14 -4.59 9.46 22.31 0.21 -4.38 16 21 C -0.07 -1.25 6.80 30.11 0.20 -1.04 16 22 C -0.16 -2.64 6.86 30.08 0.21 -2.44 16 23 C 0.40 11.71 7.76 28.07 0.22 11.93 16 24 O -0.50 -17.81 18.03 -3.07 -0.06 -17.87 16 25 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 26 H 0.10 5.41 6.20 -2.91 -0.02 5.39 16 27 H 0.11 4.26 8.06 -2.91 -0.02 4.23 16 28 H 0.12 4.10 8.06 -2.91 -0.02 4.08 16 29 H 0.12 4.17 8.05 -2.91 -0.02 4.15 16 30 H 0.11 5.07 7.31 -2.91 -0.02 5.05 16 31 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 32 H 0.14 4.05 8.04 -2.91 -0.02 4.03 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -62.04 308.70 5.44 -56.59 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 1.10 Total: 25.28 kcal Atomic # 6 Polarization: -65.22 SS G_CDS: 2.13 Total: -63.09 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.24 Total: -41.05 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.06 Total: -17.87 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.03 Total: 40.13 kcal Total: -62.04 5.44 -56.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242156328.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.886 kcal (2) G-P(sol) polarization free energy of solvation -62.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds