Wall clock time and date at job start Tue Mar 31 2020 01:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34067 * 125.78204 * 2 1 4 4 C 1.34174 * 110.76657 * 179.81895 * 3 2 1 5 5 C 1.34336 * 109.02577 * 0.45148 * 4 3 2 6 6 C 1.35958 * 125.77968 * 180.31441 * 2 1 3 7 7 C 1.48184 * 127.13122 * 359.97192 * 6 2 1 8 8 C 1.36671 * 120.34498 * 244.73041 * 7 6 2 9 9 C 1.41101 * 120.59629 * 179.84916 * 8 7 6 10 10 C 1.41212 * 119.48809 * 180.23345 * 9 8 7 11 11 H 1.08005 * 120.00297 * 329.99699 * 10 9 8 12 12 C 1.39904 * 120.00059 * 150.00420 * 10 9 8 13 13 N 1.30844 * 120.00229 * 161.61067 * 12 10 9 14 14 Si 1.86803 * 119.99915 * 341.61263 * 12 10 9 15 15 H 1.48504 * 109.47069 * 95.41706 * 14 12 10 16 16 H 1.48495 * 109.47264 * 215.41867 * 14 12 10 17 17 H 1.48502 * 109.47071 * 335.41613 * 14 12 10 18 18 C 1.39983 * 121.01915 * 0.37768 * 9 8 7 19 19 C 1.39894 * 120.10992 * 359.85459 * 18 9 8 20 20 C 1.40859 * 121.13955 * 179.97438 * 19 18 9 21 21 C 1.36197 * 119.60594 * 180.02562 * 20 19 18 22 22 C 1.39237 * 120.94115 * 359.95835 * 21 20 19 23 23 C 1.36556 * 120.98047 * 0.04131 * 22 21 20 24 24 C 1.39802 * 119.73577 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47025 * 269.69110 * 1 2 3 26 26 H 1.09006 * 109.47105 * 149.68833 * 1 2 3 27 27 H 1.09007 * 109.47015 * 29.69268 * 1 2 3 28 28 H 1.07995 * 125.48405 * 180.18972 * 4 3 2 29 29 H 1.07999 * 126.98523 * 179.74032 * 5 4 3 30 30 H 1.08002 * 119.70178 * 0.02562 * 8 7 6 31 31 H 0.97004 * 119.99898 * 179.97438 * 13 12 10 32 32 H 1.07998 * 119.94775 * 179.82644 * 18 9 8 33 33 H 1.08001 * 120.19189 * 0.02884 * 20 19 18 34 34 H 1.08003 * 119.52609 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.51079 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.13048 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2909 1.0876 0.0000 4 6 3.5868 0.7400 0.0040 5 6 3.6808 -0.6001 -0.0033 6 6 2.3019 -1.1030 -0.0061 7 6 1.8664 -2.5194 -0.0132 8 6 2.1452 -3.3328 1.0490 9 6 1.7303 -4.6815 1.0491 10 6 2.0266 -5.4998 2.1612 11 1 2.9141 -5.3132 2.7479 12 6 1.1707 -6.5524 2.5030 13 7 1.5969 -7.5170 3.2775 14 14 -0.5806 -6.5805 1.8537 15 1 -0.6396 -7.4126 0.6250 16 1 -1.4816 -7.1554 2.8846 17 1 -1.0127 -5.1960 1.5351 18 6 1.0322 -5.2216 -0.0374 19 6 0.7318 -4.4226 -1.1457 20 6 0.0310 -4.9437 -2.2508 21 6 -0.2444 -4.1379 -3.3138 22 6 0.1563 -2.8044 -3.3240 23 6 0.8373 -2.2670 -2.2694 24 6 1.1386 -3.0631 -1.1604 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3634 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5091 28 1 4.4201 1.4269 0.0077 29 1 4.5868 -1.1878 -0.0065 30 1 2.6855 -2.9391 1.8973 31 1 1.0033 -8.2466 3.5147 32 1 0.7254 -6.2569 -0.0202 33 1 -0.2861 -5.9761 -2.2552 34 1 -0.7815 -4.5389 -4.1606 35 1 -0.0747 -2.1861 -4.1788 36 1 1.1418 -1.2311 -2.2921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243064838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:41 Heat of formation + Delta-G solvation = 38.505598 kcal Electronic energy + Delta-G solvation = -20658.335817 eV Core-core repulsion = 17651.977461 eV Total energy + Delta-G solvation = -3006.358356 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.08075 -39.01238 -35.88065 -34.13868 -32.88804 -31.60161 -30.69803 -29.89442 -28.63969 -26.15503 -25.14542 -22.78136 -21.75848 -21.26274 -20.61988 -19.27733 -17.78154 -16.67042 -16.21688 -16.04657 -15.70347 -15.17481 -14.35470 -14.21663 -13.56787 -13.33178 -13.15737 -12.78923 -12.70288 -12.52566 -12.49685 -12.37555 -12.20624 -11.79203 -11.60845 -11.23240 -10.92703 -10.86072 -10.38208 -10.11160 -9.89608 -9.63798 -9.30378 -9.18393 -8.77971 -8.09524 -7.68317 -7.12212 -6.90093 -4.59285 1.45056 2.03251 2.09165 2.69087 3.02970 3.06939 3.15152 3.21554 3.28835 3.80874 3.92368 4.65514 4.86414 5.18935 5.25839 5.40515 5.53708 5.57447 5.62598 5.69222 5.75203 5.92499 5.99591 6.08988 6.14513 6.20363 6.36310 6.46211 6.48103 6.58260 6.70576 6.75739 6.99051 7.09559 7.16754 7.29086 7.30715 7.43837 7.52624 7.74061 7.83908 7.91317 8.18757 8.44812 8.62317 9.88198 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006934 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.734404 B = 4036.916169 C = 5123.660737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.006 4.006 3 O -0.186 6.186 4 C -0.051 4.051 5 C -0.196 4.196 6 C -0.123 4.123 7 C -0.009 4.009 8 C -0.116 4.116 9 C 0.090 3.910 10 C -0.426 4.426 11 H 0.094 0.906 12 C 0.082 3.918 13 N -0.796 5.796 14 Si 0.918 3.082 15 H -0.268 1.268 16 H -0.292 1.292 17 H -0.242 1.242 18 C -0.291 4.291 19 C 0.025 3.975 20 C -0.153 4.153 21 C -0.108 4.108 22 C -0.191 4.191 23 C -0.074 4.074 24 C -0.119 4.119 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.199 0.801 29 H 0.149 0.851 30 H 0.108 0.892 31 H 0.289 0.711 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 10.458 -5.825 12.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 O -0.084 6.084 4 C -0.117 4.117 5 C -0.215 4.215 6 C -0.124 4.124 7 C -0.010 4.010 8 C -0.135 4.135 9 C 0.087 3.913 10 C -0.453 4.453 11 H 0.112 0.888 12 C -0.138 4.138 13 N -0.418 5.418 14 Si 0.744 3.256 15 H -0.194 1.194 16 H -0.220 1.220 17 H -0.165 1.165 18 C -0.311 4.311 19 C 0.024 3.976 20 C -0.172 4.172 21 C -0.126 4.126 22 C -0.210 4.210 23 C -0.092 4.092 24 C -0.120 4.120 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.216 0.784 29 H 0.167 0.833 30 H 0.126 0.874 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.127 0.873 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.594 10.495 -5.615 12.009 hybrid contribution -0.337 -0.469 -0.145 0.596 sum -1.931 10.026 -5.761 11.723 Atomic orbital electron populations 1.20380 0.85060 1.04069 1.03551 1.22506 0.93570 0.83445 1.05992 1.83748 1.16757 1.35153 1.72791 1.23697 0.83852 0.96157 1.08003 1.22907 0.97287 0.94106 1.07217 1.20043 0.91907 0.92910 1.07525 1.18538 0.99046 0.89370 0.94022 1.21105 1.02072 0.93378 0.96933 1.17508 0.90409 0.90768 0.92639 1.19639 1.08217 1.07807 1.09592 0.88828 1.26259 1.01973 0.92738 0.92872 1.69699 1.37955 1.06907 1.27267 0.86144 0.80348 0.81417 0.77686 1.19431 1.22021 1.16486 1.20751 1.16229 0.98799 0.95308 1.17721 0.94050 0.92068 0.93725 1.20900 1.02405 0.99180 0.94669 1.20523 1.00205 0.94144 0.97722 1.20378 1.05652 0.95682 0.99278 1.20685 0.97138 0.98279 0.93130 1.18487 1.05191 0.93474 0.94840 0.90264 0.88642 0.91026 0.78407 0.83321 0.87360 0.90069 0.87861 0.87301 0.87877 0.87983 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.02 36.00 0.36 -0.67 16 2 C -0.01 -0.10 6.51 -35.13 -0.23 -0.32 16 3 O -0.19 -2.81 10.55 6.69 0.07 -2.74 16 4 C -0.05 -0.67 12.04 29.36 0.35 -0.32 16 5 C -0.20 -3.07 11.15 -37.51 -0.42 -3.49 16 6 C -0.12 -2.22 4.86 -103.18 -0.50 -2.72 16 7 C -0.01 -0.19 5.55 -103.13 -0.57 -0.77 16 8 C -0.12 -2.61 9.36 -39.06 -0.37 -2.98 16 9 C 0.09 2.21 5.09 -107.03 -0.55 1.67 16 10 C -0.43 -11.04 9.51 -37.83 -0.36 -11.40 16 11 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 12 C 0.08 2.09 5.38 -17.35 -0.09 2.00 16 13 N -0.80 -20.45 13.93 55.54 0.77 -19.68 16 14 Si 0.92 20.68 24.51 -169.99 -4.17 16.51 16 15 H -0.27 -5.94 6.71 56.52 0.38 -5.56 16 16 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.24 -5.62 6.88 56.52 0.39 -5.23 16 18 C -0.29 -7.06 6.86 -38.31 -0.26 -7.32 16 19 C 0.02 0.56 5.74 -106.88 -0.61 -0.06 16 20 C -0.15 -3.09 9.78 -39.32 -0.38 -3.47 16 21 C -0.11 -1.91 9.95 -39.94 -0.40 -2.31 16 22 C -0.19 -3.33 9.96 -39.82 -0.40 -3.73 16 23 C -0.07 -1.39 7.92 -39.60 -0.31 -1.70 16 24 C -0.12 -2.54 5.50 -104.65 -0.58 -3.11 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.10 1.45 6.02 -51.93 -0.31 1.13 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 29 H 0.15 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 32 H 0.10 2.53 4.69 -52.49 -0.25 2.28 16 33 H 0.11 2.05 8.06 -52.49 -0.42 1.62 16 34 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.10 1.50 8.06 -52.49 -0.42 1.07 16 36 H 0.11 1.84 6.48 -52.49 -0.34 1.50 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -27.75 303.05 -7.94 -35.70 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -3.87 Total: 6.34 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: -5.31 Total: -40.69 kcal Atomic # 7 Polarization: -20.45 SS G_CDS: 0.77 Total: -19.68 kcal Atomic # 8 Polarization: -2.81 SS G_CDS: 0.07 Total: -2.74 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.17 Total: 16.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.75 -7.94 -35.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243064838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.204 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds