Wall clock time and date at job start Tue Mar 31 2020 01:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.34067 * 125.78204 * 2 1 4 4 C 1.34174 * 110.76657 * 179.81895 * 3 2 1 5 5 C 1.34336 * 109.02577 * 0.45148 * 4 3 2 6 6 C 1.35958 * 125.77968 * 180.31441 * 2 1 3 7 7 C 1.48184 * 127.13122 * 359.97192 * 6 2 1 8 8 C 1.36671 * 120.34498 * 244.73041 * 7 6 2 9 9 C 1.41101 * 120.59629 * 179.84916 * 8 7 6 10 10 C 1.41212 * 119.48809 * 180.23345 * 9 8 7 11 11 H 1.08005 * 120.00297 * 329.99699 * 10 9 8 12 12 C 1.39904 * 120.00059 * 150.00420 * 10 9 8 13 13 N 1.30844 * 120.00229 * 161.61067 * 12 10 9 14 14 Si 1.86803 * 119.99915 * 341.61263 * 12 10 9 15 15 H 1.48504 * 109.47069 * 95.41706 * 14 12 10 16 16 H 1.48495 * 109.47264 * 215.41867 * 14 12 10 17 17 H 1.48502 * 109.47071 * 335.41613 * 14 12 10 18 18 C 1.39983 * 121.01915 * 0.37768 * 9 8 7 19 19 C 1.39894 * 120.10992 * 359.85459 * 18 9 8 20 20 C 1.40859 * 121.13955 * 179.97438 * 19 18 9 21 21 C 1.36197 * 119.60594 * 180.02562 * 20 19 18 22 22 C 1.39237 * 120.94115 * 359.95835 * 21 20 19 23 23 C 1.36556 * 120.98047 * 0.04131 * 22 21 20 24 24 C 1.39802 * 119.73577 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.47025 * 269.69110 * 1 2 3 26 26 H 1.09006 * 109.47105 * 149.68833 * 1 2 3 27 27 H 1.09007 * 109.47015 * 29.69268 * 1 2 3 28 28 H 1.07995 * 125.48405 * 180.18972 * 4 3 2 29 29 H 1.07999 * 126.98523 * 179.74032 * 5 4 3 30 30 H 1.08002 * 119.70178 * 0.02562 * 8 7 6 31 31 H 0.97004 * 119.99898 * 179.97438 * 13 12 10 32 32 H 1.07998 * 119.94775 * 179.82644 * 18 9 8 33 33 H 1.08001 * 120.19189 * 0.02884 * 20 19 18 34 34 H 1.08003 * 119.52609 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.51079 * 180.02562 * 22 21 20 36 36 H 1.07994 * 120.13048 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2909 1.0876 0.0000 4 6 3.5868 0.7400 0.0040 5 6 3.6808 -0.6001 -0.0033 6 6 2.3019 -1.1030 -0.0061 7 6 1.8664 -2.5194 -0.0132 8 6 2.1452 -3.3328 1.0490 9 6 1.7303 -4.6815 1.0491 10 6 2.0266 -5.4998 2.1612 11 1 2.9141 -5.3132 2.7479 12 6 1.1707 -6.5524 2.5030 13 7 1.5969 -7.5170 3.2775 14 14 -0.5806 -6.5805 1.8537 15 1 -0.6396 -7.4126 0.6250 16 1 -1.4816 -7.1554 2.8846 17 1 -1.0127 -5.1960 1.5351 18 6 1.0322 -5.2216 -0.0374 19 6 0.7318 -4.4226 -1.1457 20 6 0.0310 -4.9437 -2.2508 21 6 -0.2444 -4.1379 -3.3138 22 6 0.1563 -2.8044 -3.3240 23 6 0.8373 -2.2670 -2.2694 24 6 1.1386 -3.0631 -1.1604 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3634 -0.8872 -0.5187 27 1 -0.3633 0.8928 -0.5091 28 1 4.4201 1.4269 0.0077 29 1 4.5868 -1.1878 -0.0065 30 1 2.6855 -2.9391 1.8973 31 1 1.0033 -8.2466 3.5147 32 1 0.7254 -6.2569 -0.0202 33 1 -0.2861 -5.9761 -2.2552 34 1 -0.7815 -4.5389 -4.1606 35 1 -0.0747 -2.1861 -4.1788 36 1 1.1418 -1.2311 -2.2921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243064838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:40 Heat of formation + Delta-G solvation = 25.067923 kcal Electronic energy + Delta-G solvation = -20658.918518 eV Core-core repulsion = 17651.977461 eV Total energy + Delta-G solvation = -3006.941057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.28133 -40.64253 -37.55006 -35.73629 -34.54664 -32.75475 -32.14417 -31.57630 -30.21150 -27.42981 -26.85845 -24.34466 -23.26628 -22.86500 -21.96967 -20.70896 -19.35689 -18.06204 -17.90693 -17.49570 -17.09498 -16.73844 -16.01735 -15.50358 -15.10340 -15.03584 -14.54155 -14.36128 -14.05990 -14.01996 -13.83963 -13.66137 -13.64218 -13.46588 -12.98653 -12.73101 -12.71018 -12.52025 -12.01904 -11.79490 -11.61977 -11.35258 -11.00714 -10.64623 -10.29776 -9.36857 -9.32399 -9.00357 -8.54908 -6.53441 -0.16346 0.44004 0.83179 1.21259 1.25092 1.31359 1.44533 1.62522 2.07900 2.09243 2.12520 2.89539 3.52067 3.72004 3.86634 4.03978 4.17574 4.28087 4.29758 4.41887 4.52174 4.56783 4.64696 4.71785 4.78948 4.80052 4.85961 4.95288 4.99136 5.06476 5.28419 5.38594 5.41357 5.50384 5.54733 5.61610 5.73705 5.86649 5.91691 6.08621 6.25371 6.31037 6.32255 6.62026 6.73609 8.06896 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.016316 B = 0.006934 C = 0.005464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.734404 B = 4036.916169 C = 5123.660737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.001 3.999 3 O -0.185 6.185 4 C -0.023 4.023 5 C -0.225 4.225 6 C -0.163 4.163 7 C 0.010 3.990 8 C -0.148 4.148 9 C 0.080 3.920 10 C -0.468 4.468 11 H 0.063 0.937 12 C 0.053 3.947 13 N -0.837 5.837 14 Si 0.966 3.034 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.257 1.257 18 C -0.300 4.300 19 C -0.005 4.005 20 C -0.169 4.169 21 C -0.096 4.096 22 C -0.170 4.170 23 C -0.078 4.078 24 C -0.129 4.129 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.248 0.752 29 H 0.152 0.848 30 H 0.105 0.895 31 H 0.297 0.703 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 13.496 -9.272 16.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.049 4.049 3 O -0.082 6.082 4 C -0.089 4.089 5 C -0.244 4.244 6 C -0.164 4.164 7 C 0.009 3.991 8 C -0.167 4.167 9 C 0.078 3.922 10 C -0.497 4.497 11 H 0.082 0.918 12 C -0.163 4.163 13 N -0.462 5.462 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.202 1.202 17 H -0.181 1.181 18 C -0.320 4.320 19 C -0.005 4.005 20 C -0.187 4.187 21 C -0.114 4.114 22 C -0.188 4.188 23 C -0.096 4.096 24 C -0.130 4.130 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.120 0.880 28 H 0.264 0.736 29 H 0.170 0.830 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.034 13.536 -9.067 16.572 hybrid contribution 0.114 -1.121 0.567 1.262 sum -2.920 12.415 -8.500 15.326 Atomic orbital electron populations 1.20464 0.83639 1.04837 1.04266 1.22759 0.94468 0.83064 1.04583 1.83793 1.17469 1.34534 1.72398 1.24533 0.84028 0.95943 1.04366 1.23062 0.96480 0.95484 1.09337 1.20080 0.93856 0.91866 1.10588 1.18791 0.96731 0.90692 0.92842 1.21096 1.04188 0.93183 0.98220 1.17619 0.90732 0.91560 0.92328 1.19564 1.08745 1.10172 1.11211 0.91837 1.26781 1.04297 0.92259 0.93010 1.69715 1.39169 1.07904 1.29447 0.85427 0.77340 0.80445 0.77775 1.18837 1.20221 1.18087 1.20842 1.16373 0.98750 0.96047 1.18026 0.95387 0.92874 0.94194 1.21129 1.02542 1.00258 0.94759 1.21000 0.98692 0.93975 0.97724 1.20936 1.02525 0.95841 0.99508 1.20886 0.97275 0.98876 0.92546 1.18838 1.04862 0.93403 0.95852 0.89614 0.90040 0.87972 0.73603 0.83035 0.87699 0.89275 0.88757 0.86520 0.83805 0.83779 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.89 10.02 71.23 0.71 -1.18 16 2 C 0.00 0.03 6.51 25.15 0.16 0.19 16 3 O -0.18 -4.90 10.55 1.02 0.01 -4.89 16 4 C -0.02 -0.53 12.04 66.93 0.81 0.28 16 5 C -0.22 -6.69 11.15 23.61 0.26 -6.43 16 6 C -0.16 -5.72 4.86 -18.93 -0.09 -5.82 16 7 C 0.01 0.41 5.55 -18.89 -0.10 0.31 16 8 C -0.15 -7.08 9.36 22.61 0.21 -6.87 16 9 C 0.08 4.22 5.09 -21.42 -0.11 4.11 16 10 C -0.47 -26.50 9.51 23.40 0.22 -26.28 16 11 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 12 C 0.05 2.86 5.38 85.24 0.46 3.32 16 13 N -0.84 -45.84 13.93 21.82 0.30 -45.54 16 14 Si 0.97 44.41 24.51 68.60 1.68 46.09 16 15 H -0.26 -11.65 6.71 99.48 0.67 -10.98 16 16 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 17 H -0.26 -12.26 6.88 99.48 0.68 -11.57 16 18 C -0.30 -15.12 6.86 23.09 0.16 -14.96 16 19 C 0.00 -0.21 5.74 -21.33 -0.12 -0.33 16 20 C -0.17 -6.43 9.78 22.44 0.22 -6.21 16 21 C -0.10 -2.95 9.95 22.03 0.22 -2.73 16 22 C -0.17 -4.99 9.96 22.12 0.22 -4.77 16 23 C -0.08 -2.64 7.92 22.26 0.18 -2.46 16 24 C -0.13 -5.36 5.50 -19.88 -0.11 -5.47 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.28 6.02 -2.38 -0.01 2.26 16 27 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.25 2.99 8.06 -2.91 -0.02 2.97 16 29 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 30 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 31 H 0.30 14.55 8.30 -92.71 -0.77 13.78 16 32 H 0.09 4.81 4.69 -2.91 -0.01 4.79 16 33 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.12 3.78 6.48 -2.91 -0.02 3.76 16 Total: -1.00 -64.59 303.05 6.33 -58.26 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 1.04 Total: 21.38 kcal Atomic # 6 Polarization: -78.60 SS G_CDS: 3.30 Total: -75.31 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.30 Total: -45.54 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: 0.01 Total: -4.89 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.68 Total: 46.09 kcal Total: -64.59 6.33 -58.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243064838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.327 kcal (2) G-P(sol) polarization free energy of solvation -64.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds