Wall clock time and date at job start Tue Mar 31 2020 00:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36225 * 120.05843 * 2 1 4 4 C 1.40003 * 120.11458 * 179.97438 * 3 2 1 5 5 C 1.47820 * 119.88715 * 180.02562 * 4 3 2 6 6 C 1.39387 * 120.17259 * 310.00397 * 5 4 3 7 7 C 1.38328 * 120.51366 * 180.02562 * 6 5 4 8 8 C 1.37989 * 120.45251 * 359.97438 * 7 6 5 9 9 C 1.39511 * 119.91697 * 359.97438 * 8 7 6 10 10 C 1.46812 * 134.26572 * 180.02562 * 9 8 7 11 11 C 1.34013 * 106.15595 * 179.97438 * 10 9 8 12 12 O 1.34429 * 110.10451 * 0.02562 * 11 10 9 13 13 C 1.34684 * 110.90764 * 359.75012 * 12 11 10 14 14 C 1.40036 * 120.22291 * 0.02562 * 4 3 2 15 15 C 1.36183 * 120.11799 * 0.02562 * 14 4 3 16 16 C 1.40945 * 120.05761 * 179.97438 * 2 1 3 17 17 C 1.40982 * 120.11047 * 359.75669 * 16 2 1 18 18 H 1.07996 * 120.00057 * 333.59363 * 17 16 2 19 19 C 1.39979 * 120.00139 * 153.60125 * 17 16 2 20 20 N 1.30823 * 119.99881 * 343.95387 * 19 17 16 21 21 Si 1.86796 * 120.00271 * 163.96124 * 19 17 16 22 22 H 1.48497 * 109.47196 * 89.99560 * 21 19 17 23 23 H 1.48506 * 109.47338 * 209.99676 * 21 19 17 24 24 H 1.48504 * 109.46934 * 329.99687 * 21 19 17 25 25 H 1.08998 * 109.47326 * 270.02094 * 1 2 3 26 26 H 1.08997 * 109.47137 * 30.02511 * 1 2 3 27 27 H 1.09008 * 109.46815 * 150.01947 * 1 2 3 28 28 H 1.07998 * 119.93923 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.74448 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.77517 * 179.97438 * 7 6 5 31 31 H 1.07997 * 120.03887 * 180.02562 * 8 7 6 32 32 H 1.07998 * 126.92262 * 0.02562 * 10 9 8 33 33 H 1.07998 * 124.95209 * 179.97438 * 11 10 9 34 34 H 1.08006 * 119.93940 * 179.97438 * 14 4 3 35 35 H 1.08001 * 120.05920 * 179.97438 * 15 14 4 36 36 H 0.97000 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5893 1.1804 0.0005 5 6 4.3246 2.4628 0.0011 6 6 4.0015 3.4560 -0.9218 7 6 4.6854 4.6584 -0.9280 8 6 5.6974 4.8920 -0.0195 9 6 6.0354 3.9110 0.9131 10 6 7.0264 3.8214 1.9925 11 6 6.8663 2.6115 2.5462 12 8 5.8805 1.9443 1.9216 13 6 5.3469 2.6888 0.9342 14 6 4.2954 -0.0289 0.0005 15 6 3.6227 -1.2130 -0.0005 16 6 2.2129 -1.2199 0.0005 17 6 1.5116 -2.4429 0.0063 18 1 0.5178 -2.4936 0.4260 19 6 2.1034 -3.5916 -0.5319 20 7 3.1493 -3.4851 -1.3105 21 14 1.3996 -5.2766 -0.1387 22 1 0.3730 -5.6328 -1.1508 23 1 2.4888 -6.2858 -0.1621 24 1 0.7775 -5.2509 1.2095 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6493 2.1143 -0.0004 29 1 3.2117 3.2853 -1.6382 30 1 4.4254 5.4197 -1.6487 31 1 6.2267 5.8334 -0.0300 32 1 7.7401 4.5783 2.2826 33 1 7.4453 2.2280 3.3733 34 1 5.3754 -0.0225 0.0005 35 1 4.1682 -2.1451 -0.0009 36 1 3.5596 -4.2811 -1.6832 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245617013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:27 Heat of formation + Delta-G solvation = 35.039326 kcal Electronic energy + Delta-G solvation = -20197.922118 eV Core-core repulsion = 17191.413453 eV Total energy + Delta-G solvation = -3006.508665 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -42.01161 -38.18216 -37.04357 -34.00389 -32.66901 -31.51137 -30.36986 -29.17042 -28.45509 -26.16667 -24.87019 -22.81871 -21.95116 -21.27960 -20.25363 -19.32315 -17.30328 -16.90144 -16.64647 -15.69982 -15.48895 -15.17673 -14.29069 -13.92696 -13.77717 -13.40994 -12.92811 -12.67308 -12.55601 -12.34761 -11.86287 -11.83805 -11.78575 -11.52135 -11.28744 -11.17927 -11.08746 -10.78654 -10.53434 -10.35872 -9.73161 -9.56124 -9.39211 -9.21861 -8.23825 -7.94070 -7.41675 -7.08461 -6.83029 -4.40364 1.23600 1.77339 2.52371 2.80665 3.01851 3.05541 3.07266 3.15360 3.24735 3.85376 4.13329 4.55948 4.74458 4.99404 5.31311 5.48807 5.50739 5.61114 5.65957 5.83482 5.98567 6.13940 6.26782 6.32263 6.39714 6.53558 6.65346 6.68216 6.72833 6.75852 6.85984 6.96579 7.01215 7.07834 7.22798 7.36114 7.58367 7.61814 7.86788 8.00051 8.06718 8.22569 8.55154 8.79555 8.91005 10.07316 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.004557 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.183248 B = 6143.297709 C = 6734.004151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.202 4.202 3 C -0.060 4.060 4 C -0.204 4.204 5 C 0.033 3.967 6 C -0.114 4.114 7 C -0.126 4.126 8 C -0.108 4.108 9 C -0.132 4.132 10 C -0.224 4.224 11 C 0.003 3.997 12 O -0.183 6.183 13 C 0.050 3.950 14 C -0.071 4.071 15 C -0.167 4.167 16 C 0.123 3.877 17 C -0.449 4.449 18 H 0.083 0.917 19 C 0.074 3.926 20 N -0.784 5.784 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.275 1.275 24 H -0.259 1.259 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.151 0.849 33 H 0.201 0.799 34 H 0.085 0.915 35 H 0.118 0.882 36 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 8.990 2.985 10.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.204 4.204 3 C -0.078 4.078 4 C -0.205 4.205 5 C 0.033 3.967 6 C -0.132 4.132 7 C -0.144 4.144 8 C -0.126 4.126 9 C -0.132 4.132 10 C -0.244 4.244 11 C -0.063 4.063 12 O -0.083 6.083 13 C 0.003 3.997 14 C -0.090 4.090 15 C -0.186 4.186 16 C 0.121 3.879 17 C -0.477 4.477 18 H 0.101 0.899 19 C -0.145 4.145 20 N -0.408 5.408 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.183 1.183 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.169 0.831 33 H 0.218 0.782 34 H 0.104 0.896 35 H 0.135 0.865 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.253 8.560 2.887 9.984 hybrid contribution 0.084 -0.590 0.132 0.610 sum 4.337 7.970 3.019 9.562 Atomic orbital electron populations 1.20399 0.93426 1.00599 0.99673 1.19422 0.94455 0.92993 1.13496 1.20160 0.92261 0.96099 0.99305 1.17939 0.92514 0.90032 1.20030 1.17984 0.92164 0.95171 0.91428 1.21078 1.00948 0.92721 0.98476 1.20869 0.96840 0.97403 0.99316 1.20326 0.98774 0.97938 0.95577 1.19883 0.98553 0.95734 0.99070 1.22415 1.03376 0.99038 0.99537 1.23933 0.91457 0.92351 0.98549 1.84055 1.42572 1.41741 1.39968 1.19816 0.98235 0.89875 0.91780 1.20391 0.97050 0.92279 0.99245 1.20943 0.94477 0.96473 1.06695 1.17561 0.91814 0.91674 0.86894 1.19626 1.02254 0.92526 1.33335 0.89931 1.25997 0.94165 1.01606 0.92705 1.69825 1.17955 1.32002 1.21059 0.86304 0.79488 0.80684 0.80287 1.19354 1.19999 1.18318 0.94050 0.94316 0.92030 0.89196 0.85165 0.86031 0.86480 0.83138 0.78199 0.89630 0.86455 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 9.38 36.00 0.34 -1.38 16 2 C -0.20 -4.85 5.90 -104.32 -0.62 -5.47 16 3 C -0.06 -1.36 9.06 -39.64 -0.36 -1.72 16 4 C -0.20 -4.69 5.50 -104.64 -0.58 -5.27 16 5 C 0.03 0.67 5.47 -104.80 -0.57 0.10 16 6 C -0.11 -1.99 9.48 -39.12 -0.37 -2.36 16 7 C -0.13 -1.87 10.01 -39.64 -0.40 -2.27 16 8 C -0.11 -1.61 10.09 -39.20 -0.40 -2.01 16 9 C -0.13 -2.22 6.39 -105.18 -0.67 -2.89 16 10 C -0.22 -3.12 11.15 -37.60 -0.42 -3.53 16 11 C 0.00 0.04 11.96 29.25 0.35 0.39 16 12 O -0.18 -3.45 10.46 4.32 0.05 -3.41 16 13 C 0.05 0.98 6.90 -38.06 -0.26 0.72 16 14 C -0.07 -1.74 9.36 -39.65 -0.37 -2.11 16 15 C -0.17 -4.35 8.62 -39.28 -0.34 -4.69 16 16 C 0.12 3.22 5.56 -106.80 -0.59 2.63 16 17 C -0.45 -11.47 8.08 -37.89 -0.31 -11.78 16 18 H 0.08 2.01 6.89 -52.49 -0.36 1.65 16 19 C 0.07 1.81 5.16 -17.33 -0.09 1.72 16 20 N -0.78 -19.81 10.97 55.55 0.61 -19.20 16 21 Si 0.91 18.09 29.59 -169.99 -5.03 13.06 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.06 1.27 6.79 -51.92 -0.35 0.92 16 28 H 0.09 1.83 8.03 -52.49 -0.42 1.41 16 29 H 0.13 2.12 8.03 -52.49 -0.42 1.70 16 30 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 31 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.20 1.82 8.06 -52.49 -0.42 1.40 16 34 H 0.09 2.00 8.04 -52.48 -0.42 1.58 16 35 H 0.12 3.15 6.22 -52.49 -0.33 2.82 16 36 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -28.63 311.16 -9.31 -37.94 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.97 Total: 6.83 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: -5.65 Total: -39.91 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.20 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: 0.05 Total: -3.41 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.63 -9.31 -37.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245617013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.982 kcal (2) G-P(sol) polarization free energy of solvation -28.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds