Wall clock time and date at job start Tue Mar 31 2020 00:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36225 * 120.05843 * 2 1 4 4 C 1.40003 * 120.11458 * 179.97438 * 3 2 1 5 5 C 1.47820 * 119.88715 * 180.02562 * 4 3 2 6 6 C 1.39387 * 120.17259 * 310.00397 * 5 4 3 7 7 C 1.38328 * 120.51366 * 180.02562 * 6 5 4 8 8 C 1.37989 * 120.45251 * 359.97438 * 7 6 5 9 9 C 1.39511 * 119.91697 * 359.97438 * 8 7 6 10 10 C 1.46812 * 134.26572 * 180.02562 * 9 8 7 11 11 C 1.34013 * 106.15595 * 179.97438 * 10 9 8 12 12 O 1.34429 * 110.10451 * 0.02562 * 11 10 9 13 13 C 1.34684 * 110.90764 * 359.75012 * 12 11 10 14 14 C 1.40036 * 120.22291 * 0.02562 * 4 3 2 15 15 C 1.36183 * 120.11799 * 0.02562 * 14 4 3 16 16 C 1.40945 * 120.05761 * 179.97438 * 2 1 3 17 17 C 1.40982 * 120.11047 * 359.75669 * 16 2 1 18 18 H 1.07996 * 120.00057 * 333.59363 * 17 16 2 19 19 C 1.39979 * 120.00139 * 153.60125 * 17 16 2 20 20 N 1.30823 * 119.99881 * 343.95387 * 19 17 16 21 21 Si 1.86796 * 120.00271 * 163.96124 * 19 17 16 22 22 H 1.48497 * 109.47196 * 89.99560 * 21 19 17 23 23 H 1.48506 * 109.47338 * 209.99676 * 21 19 17 24 24 H 1.48504 * 109.46934 * 329.99687 * 21 19 17 25 25 H 1.08998 * 109.47326 * 270.02094 * 1 2 3 26 26 H 1.08997 * 109.47137 * 30.02511 * 1 2 3 27 27 H 1.09008 * 109.46815 * 150.01947 * 1 2 3 28 28 H 1.07998 * 119.93923 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.74448 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.77517 * 179.97438 * 7 6 5 31 31 H 1.07997 * 120.03887 * 180.02562 * 8 7 6 32 32 H 1.07998 * 126.92262 * 0.02562 * 10 9 8 33 33 H 1.07998 * 124.95209 * 179.97438 * 11 10 9 34 34 H 1.08006 * 119.93940 * 179.97438 * 14 4 3 35 35 H 1.08001 * 120.05920 * 179.97438 * 15 14 4 36 36 H 0.97000 * 120.00022 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5893 1.1804 0.0005 5 6 4.3246 2.4628 0.0011 6 6 4.0015 3.4560 -0.9218 7 6 4.6854 4.6584 -0.9280 8 6 5.6974 4.8920 -0.0195 9 6 6.0354 3.9110 0.9131 10 6 7.0264 3.8214 1.9925 11 6 6.8663 2.6115 2.5462 12 8 5.8805 1.9443 1.9216 13 6 5.3469 2.6888 0.9342 14 6 4.2954 -0.0289 0.0005 15 6 3.6227 -1.2130 -0.0005 16 6 2.2129 -1.2199 0.0005 17 6 1.5116 -2.4429 0.0063 18 1 0.5178 -2.4936 0.4260 19 6 2.1034 -3.5916 -0.5319 20 7 3.1493 -3.4851 -1.3105 21 14 1.3996 -5.2766 -0.1387 22 1 0.3730 -5.6328 -1.1508 23 1 2.4888 -6.2858 -0.1621 24 1 0.7775 -5.2509 1.2095 25 1 -0.3634 0.0004 1.0276 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 1.6493 2.1143 -0.0004 29 1 3.2117 3.2853 -1.6382 30 1 4.4254 5.4197 -1.6487 31 1 6.2267 5.8334 -0.0300 32 1 7.7401 4.5783 2.2826 33 1 7.4453 2.2280 3.3733 34 1 5.3754 -0.0225 0.0005 35 1 4.1682 -2.1451 -0.0009 36 1 3.5596 -4.2811 -1.6832 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245617013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:26 Heat of formation + Delta-G solvation = 22.064957 kcal Electronic energy + Delta-G solvation = -20198.484729 eV Core-core repulsion = 17191.413453 eV Total energy + Delta-G solvation = -3007.071276 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.26078 -39.89583 -38.45981 -35.75273 -34.18076 -33.05472 -31.98213 -30.54029 -29.93155 -27.91120 -26.58818 -24.22492 -23.34522 -22.68026 -21.91227 -20.91060 -19.15400 -18.14703 -17.93818 -17.28298 -16.92800 -16.55421 -15.86494 -15.60936 -15.41750 -14.77467 -14.44357 -14.22306 -14.06773 -13.67018 -13.48704 -13.37904 -13.22714 -12.99016 -12.89844 -12.79858 -12.64062 -12.34834 -12.19645 -11.87749 -11.35988 -11.21719 -11.06124 -10.94256 -9.61193 -9.34807 -9.27809 -8.77017 -8.60352 -6.31263 -0.05031 0.46615 0.93916 1.15869 1.37525 1.44290 1.52130 1.61707 2.05957 2.18726 2.66572 2.89261 3.63667 3.66403 3.81851 4.17542 4.19820 4.39500 4.44059 4.46121 4.49092 4.64914 4.72039 4.79050 4.89738 5.03194 5.03602 5.12444 5.25594 5.30604 5.35622 5.43978 5.51234 5.58658 5.60035 5.76217 5.86275 6.00377 6.13418 6.18048 6.34342 6.37533 6.65662 6.90620 7.02509 8.29564 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.025772 B = 0.004557 C = 0.004157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.183248 B = 6143.297709 C = 6734.004151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.214 4.214 3 C -0.070 4.070 4 C -0.193 4.193 5 C -0.013 4.013 6 C -0.112 4.112 7 C -0.124 4.124 8 C -0.094 4.094 9 C -0.147 4.147 10 C -0.218 4.218 11 C -0.005 4.005 12 O -0.219 6.219 13 C 0.018 3.982 14 C -0.085 4.085 15 C -0.190 4.190 16 C 0.089 3.911 17 C -0.481 4.481 18 H 0.086 0.914 19 C 0.033 3.967 20 N -0.823 5.823 21 Si 0.982 3.018 22 H -0.259 1.259 23 H -0.269 1.269 24 H -0.257 1.257 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.162 0.838 31 H 0.157 0.843 32 H 0.190 0.810 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 11.548 3.357 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.215 4.215 3 C -0.089 4.089 4 C -0.194 4.194 5 C -0.014 4.014 6 C -0.130 4.130 7 C -0.142 4.142 8 C -0.112 4.112 9 C -0.148 4.148 10 C -0.236 4.236 11 C -0.069 4.069 12 O -0.121 6.121 13 C -0.029 4.029 14 C -0.104 4.104 15 C -0.209 4.209 16 C 0.087 3.913 17 C -0.509 4.509 18 H 0.104 0.896 19 C -0.182 4.182 20 N -0.448 5.448 21 Si 0.803 3.197 22 H -0.184 1.184 23 H -0.193 1.193 24 H -0.181 1.181 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.133 0.867 29 H 0.154 0.846 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.208 0.792 33 H 0.259 0.741 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.633 11.142 3.260 12.500 hybrid contribution 0.132 -1.089 0.037 1.098 sum 4.765 10.053 3.297 11.603 Atomic orbital electron populations 1.20383 0.91032 1.01413 1.00684 1.19896 0.96474 0.92686 1.12454 1.20464 0.92436 0.96784 0.99169 1.18288 0.93048 0.90978 1.17080 1.18044 0.94118 0.94980 0.94214 1.21286 1.01073 0.93058 0.97602 1.21284 0.96024 0.97001 0.99853 1.20878 0.97875 0.98634 0.93772 1.20395 0.98977 0.95066 1.00318 1.22866 1.02991 0.99683 0.98068 1.24874 0.90438 0.92568 0.99059 1.84025 1.44193 1.43321 1.40587 1.20058 0.98883 0.91494 0.92434 1.20469 0.97018 0.92796 1.00084 1.20892 0.95052 0.96272 1.08679 1.17910 0.91993 0.93146 0.88273 1.19837 1.02810 0.93376 1.34900 0.89601 1.26862 0.94302 1.05199 0.91883 1.69896 1.19435 1.33288 1.22173 0.85201 0.78852 0.75603 0.80090 1.18358 1.19349 1.18050 0.92802 0.91809 0.92816 0.86661 0.84636 0.82046 0.82535 0.79248 0.74110 0.89925 0.88412 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.19 9.38 71.23 0.67 -2.53 16 2 C -0.21 -10.52 5.90 -19.67 -0.12 -10.64 16 3 C -0.07 -3.26 9.06 22.23 0.20 -3.06 16 4 C -0.19 -9.18 5.50 -19.88 -0.11 -9.29 16 5 C -0.01 -0.54 5.47 -19.98 -0.11 -0.65 16 6 C -0.11 -3.75 9.48 22.57 0.21 -3.54 16 7 C -0.12 -3.23 10.01 22.23 0.22 -3.01 16 8 C -0.09 -2.42 10.09 22.52 0.23 -2.19 16 9 C -0.15 -4.59 6.39 -20.23 -0.13 -4.72 16 10 C -0.22 -5.34 11.15 23.55 0.26 -5.08 16 11 C -0.01 -0.14 11.96 66.86 0.80 0.66 16 12 O -0.22 -8.38 10.46 -7.47 -0.08 -8.46 16 13 C 0.02 0.71 6.90 23.26 0.16 0.87 16 14 C -0.09 -4.43 9.36 22.23 0.21 -4.22 16 15 C -0.19 -10.61 8.62 22.46 0.19 -10.42 16 16 C 0.09 4.91 5.56 -21.27 -0.12 4.80 16 17 C -0.48 -25.68 8.08 23.36 0.19 -25.49 16 18 H 0.09 4.34 6.89 -2.91 -0.02 4.32 16 19 C 0.03 1.67 5.16 85.26 0.44 2.10 16 20 N -0.82 -43.74 10.97 21.83 0.24 -43.50 16 21 Si 0.98 38.05 29.59 68.60 2.03 40.08 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.22 8.08 -2.39 -0.02 2.21 16 27 H 0.05 2.24 6.79 -2.38 -0.02 2.23 16 28 H 0.12 4.62 8.03 -2.91 -0.02 4.60 16 29 H 0.14 4.25 8.03 -2.91 -0.02 4.22 16 30 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 31 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 33 H 0.24 3.75 8.06 -2.91 -0.02 3.73 16 34 H 0.08 4.18 8.04 -2.91 -0.02 4.16 16 35 H 0.10 5.71 6.22 -2.91 -0.02 5.69 16 36 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 Total: -1.00 -67.03 311.16 6.49 -60.54 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 1.09 Total: 27.74 kcal Atomic # 6 Polarization: -79.59 SS G_CDS: 3.20 Total: -76.39 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.24 Total: -43.50 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.08 Total: -8.46 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -67.03 6.49 -60.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245617013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.601 kcal (2) G-P(sol) polarization free energy of solvation -67.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds