Wall clock time and date at job start Tue Mar 31 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36218 * 119.94409 * 2 1 4 4 C 1.40939 * 119.88548 * 180.02562 * 3 2 1 5 5 C 1.40981 * 120.11064 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00472 * 330.10416 * 5 4 3 7 7 C 1.39989 * 119.99724 * 150.10465 * 5 4 3 8 8 N 1.30816 * 119.99621 * 161.73968 * 7 5 4 9 9 Si 1.86797 * 120.00371 * 341.73251 * 7 5 4 10 10 H 1.48500 * 109.47125 * 95.41468 * 9 7 5 11 11 H 1.48491 * 109.47588 * 215.41869 * 9 7 5 12 12 H 1.48503 * 109.46829 * 335.42248 * 9 7 5 13 13 C 1.40981 * 119.77658 * 359.97438 * 4 3 2 14 14 C 1.36187 * 119.88644 * 359.97438 * 13 4 3 15 15 C 1.40003 * 119.93946 * 179.97438 * 2 1 3 16 16 C 1.47821 * 119.89183 * 359.72467 * 15 2 1 17 17 C 1.39383 * 120.17758 * 244.72850 * 16 15 2 18 18 C 1.38327 * 120.51642 * 179.71469 * 17 16 15 19 19 C 1.37981 * 120.44873 * 0.55796 * 18 17 16 20 20 C 1.39510 * 119.92162 * 359.72115 * 19 18 17 21 21 C 1.46820 * 134.27078 * 179.97438 * 20 19 18 22 22 C 1.34009 * 106.15481 * 179.97438 * 21 20 19 23 23 O 1.34425 * 110.10446 * 0.02562 * 22 21 20 24 24 C 1.34679 * 110.91021 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46863 * 270.01946 * 1 2 3 26 26 H 1.09001 * 109.46720 * 30.01850 * 1 2 3 27 27 H 1.08996 * 109.46741 * 150.02500 * 1 2 3 28 28 H 1.07996 * 120.05835 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99653 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.05660 * 179.97438 * 13 4 3 31 31 H 1.07995 * 119.94348 * 180.02562 * 14 13 4 32 32 H 1.07999 * 119.73654 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.77413 * 180.27572 * 18 17 16 34 34 H 1.08006 * 120.03567 * 179.70037 * 19 18 17 35 35 H 1.08001 * 126.92129 * 359.97438 * 21 20 19 36 36 H 1.08001 * 124.94512 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1870 1.1803 0.0000 4 6 3.5964 1.1789 -0.0005 5 6 4.3049 2.3977 -0.0011 6 1 3.8752 3.2720 -0.4673 7 6 5.5655 2.4748 0.6027 8 7 6.3724 3.4616 0.3086 9 14 6.0956 1.1686 1.8283 10 1 6.8953 0.1301 1.1302 11 1 6.9192 1.7944 2.8937 12 1 4.8935 0.5425 2.4353 13 6 4.2953 -0.0455 -0.0005 14 6 3.6062 -1.2202 0.0005 15 6 2.2058 -1.2132 0.0005 16 6 1.4629 -2.4912 0.0073 17 6 1.5601 -3.3523 1.0989 18 6 0.8634 -4.5472 1.1152 19 6 0.0708 -4.9091 0.0452 20 6 -0.0353 -4.0638 -1.0595 21 6 -0.7636 -4.1278 -2.3327 22 6 -0.4633 -2.9999 -2.9912 23 8 0.3745 -2.2462 -2.2584 24 6 0.6605 -2.8459 -1.0868 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6471 2.1156 -0.0004 29 1 7.2460 3.5148 0.7266 30 1 5.3753 -0.0519 -0.0014 31 1 4.1407 -2.1586 0.0009 32 1 2.1809 -3.0825 1.9405 33 1 0.9439 -5.2034 1.9691 34 1 -0.4664 -5.8459 0.0629 35 1 -1.4109 -4.9236 -2.6706 36 1 -0.8390 -2.7354 -3.9686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245617017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:26 Heat of formation + Delta-G solvation = 38.788698 kcal Electronic energy + Delta-G solvation = -20503.603855 eV Core-core repulsion = 17497.257775 eV Total energy + Delta-G solvation = -3006.346080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17313 -38.46857 -37.13528 -34.12600 -32.66897 -31.76395 -30.96424 -29.34785 -28.77319 -26.23300 -25.15451 -22.73921 -22.02208 -21.17521 -20.64876 -19.83541 -17.23534 -17.00628 -16.90078 -15.89838 -15.73150 -15.27871 -14.42036 -14.18384 -13.69988 -13.56338 -13.10406 -12.94704 -12.71290 -12.47570 -12.37281 -12.14128 -11.88220 -11.75729 -11.60400 -11.41724 -10.88312 -10.74226 -10.52390 -10.31917 -9.88844 -9.78393 -9.56159 -9.16141 -8.32554 -7.99215 -7.68102 -7.32009 -7.03466 -4.53046 1.13893 1.64711 2.40412 2.64330 2.71297 3.07532 3.10409 3.19561 3.28964 3.93895 3.98350 4.39948 4.63708 4.87643 5.19896 5.33305 5.37306 5.43901 5.52762 5.70588 5.80683 5.86482 5.90748 6.11228 6.16713 6.24434 6.38351 6.48347 6.52676 6.62443 6.63111 6.71697 6.83281 6.87889 6.95538 7.13867 7.41039 7.46860 7.64322 7.77303 7.85240 8.07357 8.28811 8.62036 8.73581 9.98062 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.005095 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.986798 B = 5493.913585 C = 6016.789100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.022 4.022 3 C -0.211 4.211 4 C 0.102 3.898 5 C -0.439 4.439 6 H 0.092 0.908 7 C 0.084 3.916 8 N -0.802 5.802 9 Si 0.914 3.086 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.242 1.242 13 C -0.245 4.245 14 C -0.047 4.047 15 C -0.207 4.207 16 C 0.028 3.972 17 C -0.105 4.105 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.135 4.135 21 C -0.222 4.222 22 C 0.003 3.997 23 O -0.183 6.183 24 C 0.058 3.942 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.101 0.899 29 H 0.287 0.713 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.152 0.848 36 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.923 -12.784 -0.846 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.023 4.023 3 C -0.230 4.230 4 C 0.099 3.901 5 C -0.467 4.467 6 H 0.110 0.890 7 C -0.136 4.136 8 N -0.425 5.425 9 Si 0.740 3.260 10 H -0.195 1.195 11 H -0.218 1.218 12 H -0.165 1.165 13 C -0.264 4.264 14 C -0.066 4.066 15 C -0.208 4.208 16 C 0.028 3.972 17 C -0.124 4.124 18 C -0.148 4.148 19 C -0.117 4.117 20 C -0.136 4.136 21 C -0.242 4.242 22 C -0.062 4.062 23 O -0.083 6.083 24 C 0.011 3.989 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.169 0.831 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.576 -12.311 -0.913 15.623 hybrid contribution 0.324 -0.610 0.344 0.772 sum -9.252 -12.920 -0.569 15.901 Atomic orbital electron populations 1.20794 0.93546 1.01506 1.00923 1.19138 0.93744 0.92558 0.96819 1.20534 0.93816 0.95678 1.13018 1.17762 0.91900 0.92582 0.87869 1.19520 0.99426 0.97036 1.30708 0.89019 1.26239 0.94897 0.96128 0.96361 1.69695 1.07593 1.30072 1.35138 0.86270 0.79955 0.80055 0.79733 1.19542 1.21801 1.16543 1.20671 0.98138 0.92816 1.14744 1.20316 0.92483 0.96666 0.97111 1.17763 0.92226 0.89712 1.21072 1.17838 0.94727 0.95151 0.89484 1.21142 1.00264 0.93716 0.97242 1.20889 0.98305 0.97168 0.98404 1.20381 1.00143 0.98825 0.92352 1.19901 1.01159 0.96271 0.96256 1.22428 1.06284 1.00618 0.94826 1.23953 0.93628 0.91289 0.97369 1.84085 1.54239 1.44283 1.25696 1.19798 1.00228 0.91905 0.86955 0.92415 0.92500 0.92487 0.88063 0.90278 0.88135 0.88774 0.85107 0.85890 0.86324 0.83058 0.78128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.59 36.01 0.35 -1.69 16 2 C -0.02 -0.49 5.86 -104.68 -0.61 -1.10 16 3 C -0.21 -4.99 9.36 -39.29 -0.37 -5.36 16 4 C 0.10 2.60 5.10 -106.80 -0.55 2.05 16 5 C -0.44 -11.81 9.55 -37.89 -0.36 -12.17 16 6 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 7 C 0.08 2.17 5.40 -17.33 -0.09 2.08 16 8 N -0.80 -21.10 13.93 55.55 0.77 -20.33 16 9 Si 0.91 20.65 24.51 -169.99 -4.17 16.49 16 10 H -0.27 -5.92 6.70 56.52 0.38 -5.54 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.24 -5.61 6.87 56.52 0.39 -5.22 16 13 C -0.24 -5.94 7.10 -39.28 -0.28 -6.22 16 14 C -0.05 -1.06 9.66 -39.64 -0.38 -1.44 16 15 C -0.21 -4.43 5.34 -104.64 -0.56 -4.99 16 16 C 0.03 0.53 4.62 -104.80 -0.48 0.05 16 17 C -0.11 -1.70 9.70 -39.12 -0.38 -2.08 16 18 C -0.13 -1.76 10.01 -39.64 -0.40 -2.16 16 19 C -0.10 -1.35 10.09 -39.20 -0.40 -1.74 16 20 C -0.13 -2.08 6.39 -105.18 -0.67 -2.76 16 21 C -0.22 -2.81 11.15 -37.60 -0.42 -3.23 16 22 C 0.00 0.04 11.96 29.25 0.35 0.39 16 23 O -0.18 -3.17 9.80 4.34 0.04 -3.13 16 24 C 0.06 1.04 5.46 -38.06 -0.21 0.84 16 25 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 27 H 0.06 1.03 4.86 -51.93 -0.25 0.77 16 28 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 30 H 0.10 2.42 4.73 -52.49 -0.25 2.18 16 31 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.15 1.43 8.06 -52.49 -0.42 1.00 16 36 H 0.20 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -28.99 303.83 -8.13 -37.12 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -3.90 Total: 4.80 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: -5.46 Total: -39.53 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.77 Total: -20.33 kcal Atomic # 8 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.17 Total: 16.49 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.99 -8.13 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245617017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.912 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds