Wall clock time and date at job start Tue Mar 31 2020 00:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36218 * 119.94409 * 2 1 4 4 C 1.40939 * 119.88548 * 180.02562 * 3 2 1 5 5 C 1.40981 * 120.11064 * 179.97438 * 4 3 2 6 6 H 1.07996 * 120.00472 * 330.10416 * 5 4 3 7 7 C 1.39989 * 119.99724 * 150.10465 * 5 4 3 8 8 N 1.30816 * 119.99621 * 161.73968 * 7 5 4 9 9 Si 1.86797 * 120.00371 * 341.73251 * 7 5 4 10 10 H 1.48500 * 109.47125 * 95.41468 * 9 7 5 11 11 H 1.48491 * 109.47588 * 215.41869 * 9 7 5 12 12 H 1.48503 * 109.46829 * 335.42248 * 9 7 5 13 13 C 1.40981 * 119.77658 * 359.97438 * 4 3 2 14 14 C 1.36187 * 119.88644 * 359.97438 * 13 4 3 15 15 C 1.40003 * 119.93946 * 179.97438 * 2 1 3 16 16 C 1.47821 * 119.89183 * 359.72467 * 15 2 1 17 17 C 1.39383 * 120.17758 * 244.72850 * 16 15 2 18 18 C 1.38327 * 120.51642 * 179.71469 * 17 16 15 19 19 C 1.37981 * 120.44873 * 0.55796 * 18 17 16 20 20 C 1.39510 * 119.92162 * 359.72115 * 19 18 17 21 21 C 1.46820 * 134.27078 * 179.97438 * 20 19 18 22 22 C 1.34009 * 106.15481 * 179.97438 * 21 20 19 23 23 O 1.34425 * 110.10446 * 0.02562 * 22 21 20 24 24 C 1.34679 * 110.91021 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46863 * 270.01946 * 1 2 3 26 26 H 1.09001 * 109.46720 * 30.01850 * 1 2 3 27 27 H 1.08996 * 109.46741 * 150.02500 * 1 2 3 28 28 H 1.07996 * 120.05835 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99653 * 180.02562 * 8 7 5 30 30 H 1.08002 * 120.05660 * 179.97438 * 13 4 3 31 31 H 1.07995 * 119.94348 * 180.02562 * 14 13 4 32 32 H 1.07999 * 119.73654 * 359.97438 * 17 16 15 33 33 H 1.07995 * 119.77413 * 180.27572 * 18 17 16 34 34 H 1.08006 * 120.03567 * 179.70037 * 19 18 17 35 35 H 1.08001 * 126.92129 * 359.97438 * 21 20 19 36 36 H 1.08001 * 124.94512 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1870 1.1803 0.0000 4 6 3.5964 1.1789 -0.0005 5 6 4.3049 2.3977 -0.0011 6 1 3.8752 3.2720 -0.4673 7 6 5.5655 2.4748 0.6027 8 7 6.3724 3.4616 0.3086 9 14 6.0956 1.1686 1.8283 10 1 6.8953 0.1301 1.1302 11 1 6.9192 1.7944 2.8937 12 1 4.8935 0.5425 2.4353 13 6 4.2953 -0.0455 -0.0005 14 6 3.6062 -1.2202 0.0005 15 6 2.2058 -1.2132 0.0005 16 6 1.4629 -2.4912 0.0073 17 6 1.5601 -3.3523 1.0989 18 6 0.8634 -4.5472 1.1152 19 6 0.0708 -4.9091 0.0452 20 6 -0.0353 -4.0638 -1.0595 21 6 -0.7636 -4.1278 -2.3327 22 6 -0.4633 -2.9999 -2.9912 23 8 0.3745 -2.2462 -2.2584 24 6 0.6605 -2.8459 -1.0868 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 1.6471 2.1156 -0.0004 29 1 7.2460 3.5148 0.7266 30 1 5.3753 -0.0519 -0.0014 31 1 4.1407 -2.1586 0.0009 32 1 2.1809 -3.0825 1.9405 33 1 0.9439 -5.2034 1.9691 34 1 -0.4664 -5.8459 0.0629 35 1 -1.4109 -4.9236 -2.6706 36 1 -0.8390 -2.7354 -3.9686 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245617017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:25 Heat of formation + Delta-G solvation = 24.167501 kcal Electronic energy + Delta-G solvation = -20504.237877 eV Core-core repulsion = 17497.257775 eV Total energy + Delta-G solvation = -3006.980103 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.105 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.29815 -40.12914 -38.44116 -35.91192 -34.12108 -33.36241 -32.41067 -30.70315 -30.02448 -27.93354 -26.81406 -24.00169 -23.25245 -22.55157 -22.38619 -21.31996 -19.00875 -18.31485 -18.09830 -17.34450 -17.08746 -16.67084 -15.89061 -15.79147 -15.34652 -14.92695 -14.73724 -14.29346 -14.21892 -13.99333 -13.76580 -13.47420 -13.45103 -13.05946 -13.03288 -12.75986 -12.61493 -12.34980 -12.21708 -11.96992 -11.59204 -11.43054 -11.01770 -10.89243 -9.62237 -9.47572 -9.31090 -8.96233 -8.84293 -6.52708 -0.01688 0.46729 0.72304 0.86635 1.24149 1.37901 1.46640 1.55335 2.04811 2.10244 2.50642 2.83479 3.42151 3.64466 3.79248 4.12807 4.17379 4.21023 4.23213 4.44700 4.48651 4.54632 4.63491 4.66221 4.78547 4.80915 4.95169 4.97193 5.02095 5.06132 5.29120 5.36058 5.47429 5.53553 5.59494 5.64109 5.78192 5.87567 5.88911 6.00778 6.19490 6.34981 6.36465 6.69566 6.79181 8.11798 Molecular weight = 278.10amu Principal moments of inertia in cm(-1) A = 0.027364 B = 0.005095 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.986798 B = 5493.913585 C = 6016.789100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.032 4.032 3 C -0.225 4.225 4 C 0.082 3.918 5 C -0.480 4.480 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.843 5.843 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.274 1.274 12 H -0.253 1.253 13 C -0.254 4.254 14 C -0.059 4.059 15 C -0.183 4.183 16 C -0.014 4.014 17 C -0.105 4.105 18 C -0.127 4.127 19 C -0.086 4.086 20 C -0.148 4.148 21 C -0.217 4.217 22 C -0.004 4.004 23 O -0.216 6.216 24 C 0.033 3.967 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.101 0.899 29 H 0.296 0.704 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.135 0.865 33 H 0.160 0.840 34 H 0.155 0.845 35 H 0.187 0.813 36 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 -17.033 -0.440 20.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.032 4.032 3 C -0.244 4.244 4 C 0.080 3.920 5 C -0.509 4.509 6 H 0.076 0.924 7 C -0.165 4.165 8 N -0.468 5.468 9 Si 0.789 3.211 10 H -0.183 1.183 11 H -0.200 1.200 12 H -0.177 1.177 13 C -0.273 4.273 14 C -0.077 4.077 15 C -0.184 4.184 16 C -0.014 4.014 17 C -0.123 4.123 18 C -0.144 4.144 19 C -0.104 4.104 20 C -0.149 4.149 21 C -0.235 4.235 22 C -0.068 4.068 23 O -0.117 6.117 24 C -0.014 4.014 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.205 0.795 36 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -11.725 -16.564 -0.516 20.300 hybrid contribution 0.696 0.435 0.123 0.830 sum -11.029 -16.129 -0.393 19.543 Atomic orbital electron populations 1.20770 0.90925 1.02256 1.02081 1.19567 0.95855 0.92031 0.95768 1.20718 0.93502 0.96771 1.13432 1.17898 0.92777 0.92588 0.88747 1.19453 1.01022 0.96801 1.33639 0.92411 1.26852 0.94514 0.97885 0.97263 1.69713 1.08453 1.31807 1.36840 0.85482 0.79337 0.78163 0.78144 1.18348 1.20012 1.17717 1.20763 0.98270 0.93107 1.15193 1.20642 0.93294 0.96892 0.96870 1.18227 0.92256 0.91358 1.16561 1.17794 0.97046 0.94837 0.91724 1.21311 1.00310 0.94213 0.96500 1.21257 0.97146 0.96422 0.99625 1.20892 0.98914 0.99447 0.91166 1.20365 1.01125 0.95573 0.97871 1.22850 1.05966 1.01345 0.93387 1.24836 0.92514 0.91042 0.98366 1.84056 1.55660 1.45892 1.26141 1.19909 1.00965 0.93345 0.87186 0.90905 0.91555 0.91891 0.88043 0.89361 0.88316 0.86414 0.84763 0.82282 0.82710 0.79528 0.74262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.69 9.59 71.24 0.68 -3.01 16 2 C -0.03 -1.40 5.86 -19.91 -0.12 -1.52 16 3 C -0.22 -11.03 9.36 22.46 0.21 -10.82 16 4 C 0.08 4.40 5.10 -21.27 -0.11 4.29 16 5 C -0.48 -27.67 9.55 23.37 0.22 -27.45 16 6 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 7 C 0.05 2.75 5.40 85.27 0.46 3.21 16 8 N -0.84 -46.60 13.93 21.83 0.30 -46.30 16 9 Si 0.97 43.52 24.51 68.60 1.68 45.21 16 10 H -0.26 -11.03 6.70 99.48 0.67 -10.37 16 11 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.25 -11.73 6.87 99.48 0.68 -11.04 16 13 C -0.25 -12.61 7.10 22.46 0.16 -12.45 16 14 C -0.06 -2.61 9.66 22.23 0.21 -2.39 16 15 C -0.18 -7.75 5.34 -19.88 -0.11 -7.86 16 16 C -0.01 -0.48 4.62 -19.98 -0.09 -0.58 16 17 C -0.11 -3.10 9.70 22.57 0.22 -2.88 16 18 C -0.13 -2.87 10.01 22.23 0.22 -2.64 16 19 C -0.09 -1.93 10.09 22.52 0.23 -1.70 16 20 C -0.15 -4.02 6.39 -20.23 -0.13 -4.15 16 21 C -0.22 -4.55 11.15 23.55 0.26 -4.29 16 22 C 0.00 -0.08 11.96 66.86 0.80 0.72 16 23 O -0.22 -7.13 9.80 -7.39 -0.07 -7.20 16 24 C 0.03 1.11 5.46 23.26 0.13 1.23 16 25 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 27 H 0.06 2.18 4.86 -2.39 -0.01 2.17 16 28 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16 29 H 0.30 14.61 8.30 -92.71 -0.77 13.84 16 30 H 0.10 4.84 4.73 -2.91 -0.01 4.83 16 31 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 32 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.19 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.24 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -66.88 303.83 6.21 -60.67 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 1.04 Total: 19.89 kcal Atomic # 6 Polarization: -75.53 SS G_CDS: 3.26 Total: -72.27 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: 0.30 Total: -46.30 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -0.07 Total: -7.20 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.68 Total: 45.21 kcal Total: -66.88 6.21 -60.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245617017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.841 kcal (2) G-P(sol) polarization free energy of solvation -66.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds