Wall clock time and date at job start Mon Mar 30 2020 23:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48500 * 109.47031 * 270.00367 * 3 2 1 5 5 H 1.48500 * 109.46790 * 30.00128 * 3 2 1 6 6 H 1.48496 * 109.47074 * 150.00006 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.50693 * 109.47399 * 179.97438 * 19 18 16 21 21 N 1.34778 * 119.99987 * 179.97438 * 20 19 18 22 22 O 1.21281 * 120.00106 * 0.02562 * 20 19 18 23 23 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 24 24 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 26 26 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 27 27 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 28 28 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 29 29 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 30 30 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 31 31 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 32 32 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 33 33 H 0.96997 * 120.00059 * 0.02562 * 21 20 19 34 34 H 0.96999 * 119.99878 * 180.02562 * 21 20 19 35 35 H 1.08006 * 120.03219 * 180.02562 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6526 0.7001 6 1 3.5472 1.4400 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2547 -10.9030 -2.2343 21 7 -0.5682 -11.6115 -3.3372 22 8 -0.5250 -11.3400 -1.1357 23 6 1.4365 -4.7345 0.2253 24 1 -0.4849 0.8401 -0.0004 25 1 3.9527 -2.4857 -0.0140 26 1 5.2811 -4.5471 0.1902 27 1 4.1533 -6.7247 0.4045 28 1 2.1300 -7.9004 1.0433 29 1 0.5456 -7.0924 0.9734 30 1 0.3769 -9.4904 -0.2452 31 1 -0.1993 -8.8909 -2.9441 32 1 1.3856 -9.6982 -2.8752 33 1 -0.3524 -11.2619 -4.2158 34 1 -1.0097 -12.4711 -3.2522 35 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253963036.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:27 Heat of formation + Delta-G solvation = -79.648503 kcal Electronic energy + Delta-G solvation = -20266.726020 eV Core-core repulsion = 16844.394855 eV Total energy + Delta-G solvation = -3422.331165 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32645 -39.38860 -38.61600 -36.43186 -34.44972 -34.18786 -32.35820 -31.95946 -29.27446 -28.51203 -26.39992 -25.13805 -21.74995 -21.42383 -20.94752 -20.23090 -18.31055 -17.55264 -17.39245 -16.88102 -16.18964 -16.12179 -15.64559 -15.17651 -14.84971 -14.33428 -14.24128 -14.05155 -13.51255 -13.43444 -13.20975 -12.91505 -12.50164 -12.34101 -11.76523 -11.46476 -11.22346 -10.78370 -10.73164 -10.56102 -10.53166 -10.40007 -10.21803 -9.80869 -9.27433 -9.23840 -8.77845 -7.99992 -7.14997 -6.38347 -3.97234 2.11342 2.13664 2.45842 2.75536 2.78914 3.17013 3.17512 3.22447 3.40529 4.01961 4.37327 4.60952 4.92778 5.00150 5.05834 5.16853 5.21968 5.35167 5.57287 5.73689 5.82247 6.00268 6.18163 6.24408 6.27387 6.40928 6.72614 6.78761 6.98821 7.13853 7.33737 7.42627 7.45145 7.50907 7.71745 7.89857 8.06954 8.28248 9.07520 9.79075 10.80067 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003119 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.731724 B = 8975.070541 C = 9456.506070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.038 3.962 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.091 0.909 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.033 4.033 15 C -0.092 4.092 16 C 0.517 3.483 17 O -0.520 6.520 18 N -0.729 5.729 19 C 0.099 3.901 20 C 0.515 3.485 21 N -0.851 5.851 22 O -0.540 6.540 23 C -0.174 4.174 24 H 0.269 0.731 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.102 0.898 30 H 0.410 0.590 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.406 0.594 34 H 0.405 0.595 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.446 -19.627 -4.073 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.101 3.899 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.215 4.215 14 C -0.034 4.034 15 C -0.132 4.132 16 C 0.304 3.696 17 O -0.394 6.394 18 N -0.387 5.387 19 C -0.029 4.029 20 C 0.299 3.701 21 N -0.415 5.415 22 O -0.417 6.417 23 C -0.194 4.194 24 H 0.079 0.921 25 H 0.144 0.856 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.248 0.752 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.234 0.766 34 H 0.236 0.764 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.177 -19.066 -4.027 19.522 hybrid contribution 0.266 0.330 -0.225 0.479 sum 1.443 -18.737 -4.252 19.267 Atomic orbital electron populations 1.70047 1.05928 1.27508 1.46557 1.25272 0.95831 0.98760 0.96708 0.85721 0.78899 0.80189 0.78662 1.19941 1.20313 1.19235 1.21314 0.91771 0.80879 1.52687 0.89142 1.83976 1.34225 1.11361 1.78843 1.19275 0.90243 0.87956 0.92397 1.21181 0.93843 0.98990 1.10941 1.20675 0.98360 0.92329 0.97997 1.20353 0.93297 0.96902 1.10931 1.18661 0.93235 0.91734 0.99773 1.20568 1.02858 0.95843 0.93919 1.20804 0.76710 0.79798 0.92280 1.90762 1.49282 1.59430 1.39901 1.45782 1.63154 1.21616 1.08161 1.21005 1.01881 0.92134 0.87894 1.20638 0.78159 0.86699 0.84555 1.43743 1.64055 1.24527 1.09152 1.90753 1.53918 1.70855 1.26166 1.19952 0.99092 0.89971 1.10343 0.92133 0.85635 0.87490 0.87907 0.88160 0.88002 0.75214 0.88204 0.88327 0.76561 0.76370 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.91 13.67 55.48 0.76 -25.15 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.39 -11.21 9.49 30.89 0.29 -10.92 16 8 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 9 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 10 C 0.15 3.91 6.65 -39.11 -0.26 3.65 16 11 C -0.23 -5.26 9.17 -39.39 -0.36 -5.62 16 12 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 13 C -0.20 -3.58 9.70 -39.54 -0.38 -3.97 16 14 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.26 5.83 -29.03 -0.17 -1.43 16 16 C 0.52 7.54 7.82 -10.99 -0.09 7.45 16 17 O -0.52 -9.83 16.03 5.56 0.09 -9.75 16 18 N -0.73 -8.12 5.53 -61.47 -0.34 -8.46 16 19 C 0.10 0.88 6.15 -5.20 -0.03 0.85 16 20 C 0.52 4.30 8.17 -10.99 -0.09 4.21 16 21 N -0.85 -3.67 8.87 31.22 0.28 -3.39 16 22 O -0.54 -6.53 16.50 5.56 0.09 -6.44 16 23 C -0.17 -3.87 9.65 -39.40 -0.38 -4.25 16 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.13 2.84 5.64 -52.49 -0.30 2.55 16 26 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 27 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 29 H 0.10 1.21 8.08 -51.93 -0.42 0.79 16 30 H 0.41 4.11 7.44 -40.82 -0.30 3.80 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.41 0.64 8.83 -40.82 -0.36 0.28 16 34 H 0.41 1.38 8.93 -40.82 -0.36 1.02 16 35 H 0.11 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 314.75 15.07 4.74 4.74 Total: -1.00 -37.24 314.75 -5.51 -42.75 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.69 Total: 7.05 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.42 Total: -11.99 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.70 Total: -37.00 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.18 Total: -21.50 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.24 -5.51 -42.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253963036.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.901 kcal (2) G-P(sol) polarization free energy of solvation -37.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds