Wall clock time and date at job start Tue Mar 31 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48499 * 109.47143 * 269.99756 * 3 2 1 5 5 H 1.48500 * 109.47318 * 29.99746 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99650 * 3 2 1 7 7 C 1.37870 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00312 * 0.02562 * 7 2 1 10 10 O 1.42902 * 113.28080 * 46.93101 * 9 7 2 11 11 C 1.53500 * 114.20447 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98401 * 139.65508 * 11 9 7 13 13 C 1.34772 * 136.06016 * 152.84313 * 12 11 9 14 14 O 1.21617 * 120.00223 * 359.97438 * 13 12 11 15 15 C 1.47425 * 120.00252 * 179.97438 * 13 12 11 16 16 C 1.36093 * 126.44975 * 179.97438 * 15 13 12 17 17 O 1.34255 * 106.94938 * 180.30131 * 16 15 13 18 18 C 1.34053 * 108.22576 * 359.57524 * 17 16 15 19 19 C 1.50701 * 125.37886 * 180.16836 * 18 17 16 20 20 C 1.52999 * 117.49840 * 8.93620 * 19 18 17 21 21 C 1.52992 * 117.50116 * 300.31066 * 19 18 17 22 22 N 1.29935 * 109.24194 * 0.43696 * 18 17 16 23 23 C 1.47069 * 87.88437 * 333.10103 * 12 11 9 24 24 H 0.97007 * 119.99891 * 0.02562 * 1 2 3 25 25 H 0.96694 * 113.99870 * 313.06414 * 10 9 7 26 26 H 1.08993 * 113.46802 * 24.87486 * 11 9 7 27 27 H 1.09004 * 113.51911 * 254.43895 * 11 9 7 28 28 H 1.08002 * 126.52257 * 0.03371 * 16 15 13 29 29 H 1.09000 * 115.54820 * 154.63404 * 19 18 17 30 30 H 1.09000 * 117.49701 * 359.97438 * 20 19 18 31 31 H 1.08999 * 117.50079 * 145.02180 * 20 19 18 32 32 H 1.09004 * 117.50066 * 214.97722 * 21 19 18 33 33 H 1.09000 * 117.50001 * 359.97438 * 21 19 18 34 34 H 1.09001 * 113.47179 * 141.67686 * 23 12 11 35 35 H 1.09003 * 113.46756 * 272.11702 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.1926 -2.5403 -0.9588 11 6 2.1488 -3.7442 0.0005 12 7 1.2099 -4.3574 0.9520 13 6 0.8346 -5.6113 1.2735 14 8 1.3294 -6.5609 0.6970 15 6 -0.1759 -5.8317 2.3241 16 6 -0.6493 -7.0341 2.7511 17 8 -1.5547 -6.7804 3.7094 18 6 -1.6293 -5.4522 3.8746 19 6 -2.5252 -4.7442 4.8581 20 6 -3.2672 -5.6039 5.8834 21 6 -4.0334 -4.9631 4.7244 22 7 -0.8114 -4.8713 3.0488 23 6 0.8561 -3.0000 1.3938 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3710 -1.7546 -0.9566 26 1 3.1384 -3.5657 0.4211 27 1 2.1857 -4.2538 -0.9623 28 1 -0.3559 -8.0070 2.3853 29 1 -2.1860 -3.7590 5.1782 30 1 -3.1078 -6.6815 5.8462 31 1 -3.4164 -5.1843 6.8783 32 1 -4.6867 -4.1220 4.9568 33 1 -4.3779 -5.6188 3.9247 34 1 -0.2046 -2.8775 1.6130 35 1 1.4979 -2.6213 2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256346443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:56 Heat of formation + Delta-G solvation = 10.172396 kcal Electronic energy + Delta-G solvation = -21371.570563 eV Core-core repulsion = 17953.134324 eV Total energy + Delta-G solvation = -3418.436239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.31756 -39.45473 -37.51823 -37.23320 -34.69299 -33.93480 -32.13907 -30.25294 -28.70072 -25.64686 -24.99982 -24.28055 -23.27889 -22.65524 -20.98626 -19.89607 -18.57690 -17.61591 -17.12071 -16.72695 -16.30455 -15.72155 -15.46155 -15.04814 -14.69102 -14.51930 -14.10692 -13.54212 -13.08688 -12.68625 -12.59355 -12.32385 -11.95743 -11.86593 -11.55344 -11.50120 -11.05271 -10.98634 -10.85887 -10.77902 -10.58781 -10.40698 -10.16468 -9.83716 -9.25713 -8.81827 -8.73219 -8.31731 -7.80946 -6.35386 -4.45595 1.24299 2.15910 2.57024 3.17639 3.25094 3.27757 3.42681 3.52513 3.74819 3.88303 4.21703 4.47438 4.62018 4.74871 4.87758 4.96462 5.08505 5.32622 5.45908 5.62621 5.64840 5.71044 5.78998 5.82299 5.96103 6.13950 6.23627 6.46078 6.65138 6.69514 6.96036 7.17221 7.66195 7.67690 7.85596 8.43983 8.57245 8.72311 9.25205 9.54800 10.71506 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005011 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.915370 B = 5586.765612 C = 6679.069302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.236 3.764 10 O -0.572 6.572 11 C 0.108 3.892 12 N -0.614 5.614 13 C 0.615 3.385 14 O -0.564 6.564 15 C -0.047 4.047 16 C -0.005 4.005 17 O -0.201 6.201 18 C 0.216 3.784 19 C -0.068 4.068 20 C -0.164 4.164 21 C -0.158 4.158 22 N -0.438 5.438 23 C 0.085 3.915 24 H 0.273 0.727 25 H 0.394 0.606 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.230 0.770 29 H 0.148 0.852 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 -7.567 10.763 14.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.091 0.909 9 C 0.194 3.806 10 O -0.385 6.385 11 C -0.014 4.014 12 N -0.344 5.344 13 C 0.403 3.597 14 O -0.445 6.445 15 C -0.168 4.168 16 C -0.078 4.078 17 O -0.087 6.087 18 C 0.008 3.992 19 C -0.087 4.087 20 C -0.202 4.202 21 C -0.196 4.196 22 N -0.167 5.167 23 C -0.037 4.037 24 H 0.084 0.916 25 H 0.250 0.750 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.246 0.754 29 H 0.166 0.834 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.962 -8.043 10.326 14.383 hybrid contribution 0.139 0.636 0.226 0.689 sum -5.823 -7.407 10.553 14.147 Atomic orbital electron populations 1.69282 1.06195 1.28112 1.50127 1.25071 0.95009 0.99876 0.93061 0.86314 0.79743 0.81921 0.78432 1.20262 1.20919 1.19544 1.21413 0.93875 0.89731 1.52100 0.90937 1.19540 0.85424 0.90892 0.84696 1.86032 1.45205 1.48429 1.58864 1.23417 0.93799 0.92248 0.91960 1.49486 1.41062 1.04787 1.39102 1.16184 0.80766 0.81827 0.80894 1.90752 1.58079 1.40969 1.54689 1.21898 1.03184 0.89536 1.02153 1.25171 0.91112 1.01163 0.90367 1.84293 1.49580 1.27925 1.46946 1.25147 0.98508 0.77232 0.98344 1.20239 0.91248 0.99859 0.97349 1.23105 1.02296 0.99815 0.94952 1.23132 0.91783 1.03761 1.00886 1.70905 1.07670 1.32295 1.05876 1.24136 1.01560 0.76439 1.01590 0.91620 0.74966 0.89404 0.91340 0.75408 0.83424 0.87924 0.87273 0.87060 0.88164 0.90563 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.22 11.01 55.43 0.61 -22.61 16 2 C 0.07 1.83 5.39 -17.82 -0.10 1.73 16 3 Si 0.91 19.63 29.54 -169.99 -5.02 14.61 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.53 -13.65 8.69 -34.44 -0.30 -13.95 16 8 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.24 5.92 1.57 -91.39 -0.14 5.77 16 10 O -0.57 -15.39 13.54 -35.23 -0.48 -15.87 16 11 C 0.11 2.45 8.04 -8.50 -0.07 2.38 16 12 N -0.61 -14.15 3.69 -186.65 -0.69 -14.84 16 13 C 0.61 13.71 8.07 -12.52 -0.10 13.61 16 14 O -0.56 -13.30 17.67 5.26 0.09 -13.21 16 15 C -0.05 -0.91 6.96 -83.02 -0.58 -1.48 16 16 C 0.00 -0.07 11.95 29.96 0.36 0.29 16 17 O -0.20 -2.83 10.40 6.51 0.07 -2.76 16 18 C 0.22 3.24 7.80 -13.08 -0.10 3.14 16 19 C -0.07 -0.74 6.33 -91.78 -0.58 -1.32 16 20 C -0.16 -1.28 10.16 -26.73 -0.27 -1.55 16 21 C -0.16 -1.35 10.23 -26.73 -0.27 -1.63 16 22 N -0.44 -8.19 9.86 -7.65 -0.08 -8.27 16 23 C 0.09 2.00 7.18 -8.64 -0.06 1.94 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.39 10.67 6.32 45.56 0.29 10.95 16 26 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 27 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 28 H 0.23 2.63 8.06 -52.49 -0.42 2.21 16 29 H 0.15 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 31 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.87 7.47 -51.93 -0.39 1.49 16 35 H 0.08 1.77 8.10 -51.93 -0.42 1.35 16 LS Contribution 312.22 15.07 4.71 4.71 Total: -1.00 -30.72 312.22 -6.44 -37.16 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -3.43 Total: 12.14 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -2.22 Total: 8.93 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.15 Total: -45.71 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.32 Total: -31.83 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.72 -6.44 -37.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256346443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.336 kcal (2) G-P(sol) polarization free energy of solvation -30.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds