Wall clock time and date at job start Tue Mar 31 2020 00:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48499 * 109.47143 * 269.99756 * 3 2 1 5 5 H 1.48500 * 109.47318 * 29.99746 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99650 * 3 2 1 7 7 C 1.37870 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00312 * 0.02562 * 7 2 1 10 10 O 1.42902 * 113.28080 * 46.93101 * 9 7 2 11 11 C 1.53500 * 114.20447 * 179.97438 * 9 7 2 12 12 N 1.47068 * 87.98401 * 139.65508 * 11 9 7 13 13 C 1.34772 * 136.06016 * 152.84313 * 12 11 9 14 14 O 1.21617 * 120.00223 * 359.97438 * 13 12 11 15 15 C 1.47425 * 120.00252 * 179.97438 * 13 12 11 16 16 C 1.36093 * 126.44975 * 179.97438 * 15 13 12 17 17 O 1.34255 * 106.94938 * 180.30131 * 16 15 13 18 18 C 1.34053 * 108.22576 * 359.57524 * 17 16 15 19 19 C 1.50701 * 125.37886 * 180.16836 * 18 17 16 20 20 C 1.52999 * 117.49840 * 8.93620 * 19 18 17 21 21 C 1.52992 * 117.50116 * 300.31066 * 19 18 17 22 22 N 1.29935 * 109.24194 * 0.43696 * 18 17 16 23 23 C 1.47069 * 87.88437 * 333.10103 * 12 11 9 24 24 H 0.97007 * 119.99891 * 0.02562 * 1 2 3 25 25 H 0.96694 * 113.99870 * 313.06414 * 10 9 7 26 26 H 1.08993 * 113.46802 * 24.87486 * 11 9 7 27 27 H 1.09004 * 113.51911 * 254.43895 * 11 9 7 28 28 H 1.08002 * 126.52257 * 0.03371 * 16 15 13 29 29 H 1.09000 * 115.54820 * 154.63404 * 19 18 17 30 30 H 1.09000 * 117.49701 * 359.97438 * 20 19 18 31 31 H 1.08999 * 117.50079 * 145.02180 * 20 19 18 32 32 H 1.09004 * 117.50066 * 214.97722 * 21 19 18 33 33 H 1.09000 * 117.50001 * 359.97438 * 21 19 18 34 34 H 1.09001 * 113.47179 * 141.67686 * 23 12 11 35 35 H 1.09003 * 113.46756 * 272.11702 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.1926 -2.5403 -0.9588 11 6 2.1488 -3.7442 0.0005 12 7 1.2099 -4.3574 0.9520 13 6 0.8346 -5.6113 1.2735 14 8 1.3294 -6.5609 0.6970 15 6 -0.1759 -5.8317 2.3241 16 6 -0.6493 -7.0341 2.7511 17 8 -1.5547 -6.7804 3.7094 18 6 -1.6293 -5.4522 3.8746 19 6 -2.5252 -4.7442 4.8581 20 6 -3.2672 -5.6039 5.8834 21 6 -4.0334 -4.9631 4.7244 22 7 -0.8114 -4.8713 3.0488 23 6 0.8561 -3.0000 1.3938 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3710 -1.7546 -0.9566 26 1 3.1384 -3.5657 0.4211 27 1 2.1857 -4.2538 -0.9623 28 1 -0.3559 -8.0070 2.3853 29 1 -2.1860 -3.7590 5.1782 30 1 -3.1078 -6.6815 5.8462 31 1 -3.4164 -5.1843 6.8783 32 1 -4.6867 -4.1220 4.9568 33 1 -4.3779 -5.6188 3.9247 34 1 -0.2046 -2.8775 1.6130 35 1 1.4979 -2.6213 2.1894 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256346443.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:56 Heat of formation + Delta-G solvation = -13.622425 kcal Electronic energy + Delta-G solvation = -21372.602384 eV Core-core repulsion = 17953.134324 eV Total energy + Delta-G solvation = -3419.468060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.54472 -41.26961 -39.18154 -38.12555 -36.07589 -35.82347 -34.13856 -31.58414 -30.45621 -27.49870 -26.87104 -25.30512 -24.71701 -23.30750 -22.34467 -21.44467 -20.16513 -19.45199 -18.56889 -17.98494 -17.77135 -17.25641 -16.78273 -16.70815 -16.34196 -15.95410 -15.60210 -15.06445 -14.71019 -14.49475 -14.15213 -13.80215 -13.42499 -13.41414 -12.82859 -12.78423 -12.68417 -12.44329 -12.22650 -12.20058 -11.85724 -11.80821 -11.65289 -11.48489 -11.13063 -10.68049 -10.27910 -10.04155 -9.62824 -8.27662 -6.45630 -0.02453 0.85106 1.42674 1.47783 1.49907 1.60132 1.82020 2.13471 2.40740 2.61275 2.90034 2.94408 3.37963 3.67321 3.71061 3.78513 3.97069 4.08521 4.16483 4.37285 4.40141 4.55514 4.59784 4.73753 4.74905 4.79172 4.89201 4.97010 5.05719 5.10056 5.20006 5.20945 5.71840 5.88391 6.41236 6.59988 6.67492 6.98565 7.27990 7.45452 8.79322 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.005011 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.915370 B = 5586.765612 C = 6679.069302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.031 3.969 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.218 3.782 10 O -0.587 6.587 11 C 0.110 3.890 12 N -0.623 5.623 13 C 0.611 3.389 14 O -0.584 6.584 15 C -0.096 4.096 16 C 0.031 3.969 17 O -0.189 6.189 18 C 0.228 3.772 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.151 4.151 22 N -0.483 5.483 23 C 0.105 3.895 24 H 0.277 0.723 25 H 0.389 0.611 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.264 0.736 29 H 0.151 0.849 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.882 -7.792 12.472 16.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.170 4.170 3 Si 0.799 3.201 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.591 4.591 8 H 0.096 0.904 9 C 0.176 3.824 10 O -0.400 6.400 11 C -0.012 4.012 12 N -0.353 5.353 13 C 0.401 3.599 14 O -0.467 6.467 15 C -0.215 4.215 16 C -0.043 4.043 17 O -0.075 6.075 18 C 0.019 3.981 19 C -0.120 4.120 20 C -0.175 4.175 21 C -0.189 4.189 22 N -0.212 5.212 23 C -0.018 4.018 24 H 0.087 0.913 25 H 0.245 0.755 26 H 0.127 0.873 27 H 0.080 0.920 28 H 0.280 0.720 29 H 0.168 0.832 30 H 0.123 0.877 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.112 0.888 34 H 0.077 0.923 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.499 -8.280 12.039 15.991 hybrid contribution 0.219 0.634 -0.267 0.722 sum -6.280 -7.646 11.772 15.378 Atomic orbital electron populations 1.69354 1.07379 1.29014 1.50212 1.25835 0.95769 1.02928 0.92428 0.85291 0.78644 0.77811 0.78307 1.20161 1.20550 1.18840 1.21654 0.94279 0.90325 1.52877 0.90384 1.19816 0.85489 0.91946 0.85107 1.86014 1.45824 1.48298 1.59839 1.23427 0.94480 0.91223 0.92078 1.49527 1.41402 1.05059 1.39316 1.16644 0.80938 0.81122 0.81191 1.90714 1.59055 1.41183 1.55755 1.21643 1.04870 0.91450 1.03520 1.25733 0.88950 1.01105 0.88510 1.84350 1.49076 1.27670 1.46440 1.25912 0.97388 0.77341 0.97430 1.20534 0.92105 1.00608 0.98708 1.23254 0.99158 0.99545 0.95495 1.23261 0.90045 1.04387 1.01178 1.70829 1.09548 1.33310 1.07504 1.23825 1.00399 0.76816 1.00791 0.91316 0.75510 0.87295 0.91985 0.72032 0.83177 0.87743 0.84594 0.85104 0.88806 0.92314 0.89943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.01 11.01 21.45 0.24 -47.77 16 2 C 0.03 1.55 5.39 84.65 0.46 2.00 16 3 Si 0.98 39.88 29.54 68.60 2.03 41.90 16 4 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.55 -28.47 8.69 25.60 0.22 -28.25 16 8 H 0.08 3.83 7.81 -2.91 -0.02 3.80 16 9 C 0.22 11.12 1.57 -11.29 -0.02 11.11 16 10 O -0.59 -32.54 13.54 -148.98 -2.02 -34.55 16 11 C 0.11 5.08 8.04 83.18 0.67 5.75 16 12 N -0.62 -29.29 3.69 -863.16 -3.19 -32.47 16 13 C 0.61 27.63 8.07 86.66 0.70 28.33 16 14 O -0.58 -27.76 17.67 -4.09 -0.07 -27.83 16 15 C -0.10 -3.69 6.96 40.41 0.28 -3.41 16 16 C 0.03 0.89 11.95 67.32 0.80 1.69 16 17 O -0.19 -4.97 10.40 0.37 0.00 -4.96 16 18 C 0.23 6.63 7.80 88.39 0.69 7.32 16 19 C -0.10 -2.03 6.33 -11.54 -0.07 -2.10 16 20 C -0.14 -1.70 10.16 30.59 0.31 -1.39 16 21 C -0.15 -2.22 10.23 30.59 0.31 -1.91 16 22 N -0.48 -18.20 9.86 -293.03 -2.89 -21.09 16 23 C 0.10 5.03 7.18 83.09 0.60 5.63 16 24 H 0.28 13.59 8.31 -92.70 -0.77 12.82 16 25 H 0.39 21.80 6.32 -74.06 -0.47 21.33 16 26 H 0.11 4.49 8.10 -2.39 -0.02 4.47 16 27 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 28 H 0.26 5.35 8.06 -2.91 -0.02 5.33 16 29 H 0.15 2.91 8.14 -2.39 -0.02 2.89 16 30 H 0.10 1.30 7.94 -2.39 -0.02 1.28 16 31 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.13 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.06 3.00 7.47 -2.39 -0.02 2.98 16 35 H 0.08 3.82 8.10 -2.39 -0.02 3.80 16 Total: -1.00 -67.00 312.22 -0.29 -67.28 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.66 Total: 34.71 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 4.95 Total: 24.78 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -5.84 Total: -101.34 kcal Atomic # 8 Polarization: -65.26 SS G_CDS: -2.08 Total: -67.34 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.90 kcal Total: -67.00 -0.29 -67.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256346443.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.661 kcal (2) G-P(sol) polarization free energy of solvation -66.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds