Wall clock time and date at job start Mon Mar 30 2020 23:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99759 * 2 1 4 4 H 1.48493 * 109.47013 * 269.99869 * 3 2 1 5 5 H 1.48509 * 109.46945 * 29.99954 * 3 2 1 6 6 H 1.48497 * 109.47052 * 149.99670 * 3 2 1 7 7 C 1.37873 * 120.00337 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00469 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99831 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47463 * 60.00085 * 9 7 2 11 11 O 1.45204 * 109.47064 * 179.97438 * 9 7 2 12 12 C 1.34238 * 116.99974 * 210.00105 * 11 9 7 13 13 O 1.20823 * 119.99729 * 0.02562 * 12 11 9 14 14 C 1.50700 * 119.99613 * 179.97438 * 12 11 9 15 15 H 1.08996 * 109.47524 * 15.00056 * 14 12 11 16 16 F 1.39893 * 109.47120 * 254.99760 * 14 12 11 17 17 C 1.50700 * 109.46452 * 135.00389 * 14 12 11 18 18 C 1.38228 * 120.00506 * 64.72487 * 17 14 12 19 19 C 1.38235 * 119.99961 * 179.80671 * 18 17 14 20 20 C 1.38236 * 120.00247 * 0.39900 * 19 18 17 21 21 C 1.38236 * 119.99680 * 359.85607 * 20 19 18 22 22 C 1.38229 * 120.00370 * 359.95512 * 21 20 19 23 23 C 1.52996 * 109.47245 * 299.99632 * 9 7 2 24 24 C 1.53002 * 117.49888 * 111.25511 * 23 9 7 25 25 C 1.53000 * 117.50107 * 179.91273 * 23 9 7 26 26 H 0.96991 * 120.00328 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00084 * 359.97438 * 18 17 14 28 28 H 1.08002 * 119.99911 * 180.22623 * 19 18 17 29 29 H 1.07998 * 120.00056 * 179.83032 * 20 19 18 30 30 H 1.08000 * 119.99509 * 179.97438 * 21 20 19 31 31 H 1.07994 * 120.00300 * 180.02562 * 22 21 20 32 32 H 1.09002 * 115.54951 * 325.58484 * 23 9 7 33 33 H 1.09000 * 117.49996 * 215.00804 * 24 23 9 34 34 H 1.08999 * 117.49664 * 0.02562 * 24 23 9 35 35 H 1.09008 * 117.49673 * 359.97438 * 25 23 9 36 36 H 1.08999 * 117.49959 * 144.99502 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 2.1947 -3.6027 0.0005 12 6 1.8035 -4.7391 -0.5975 13 8 0.7090 -4.8090 -1.1046 14 6 2.7299 -5.9271 -0.6374 15 1 3.5385 -5.7815 0.0788 16 9 3.2641 -6.0588 -1.9236 17 6 1.9625 -7.1744 -0.2821 18 6 0.9467 -7.6197 -1.1072 19 6 0.2455 -8.7661 -0.7832 20 6 0.5546 -9.4627 0.3701 21 6 1.5669 -9.0145 1.1980 22 6 2.2707 -7.8703 0.8721 23 6 0.3711 -2.5800 1.2495 24 6 -1.1445 -2.5125 1.0513 25 6 -0.4805 -3.8377 1.4334 26 1 -0.4850 0.8399 -0.0004 27 1 0.7027 -7.0734 -2.0063 28 1 -0.5456 -9.1160 -1.4297 29 1 0.0049 -10.3568 0.6246 30 1 1.8080 -9.5585 2.0992 31 1 3.0618 -7.5203 1.5186 32 1 0.7827 -2.1154 2.1455 33 1 -1.7301 -2.0035 1.8169 34 1 -1.5147 -2.4110 0.0311 35 1 -0.4141 -4.6074 0.6644 36 1 -0.6291 -4.2005 2.4505 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659381.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:26 Heat of formation + Delta-G solvation = -97.020028 kcal Electronic energy + Delta-G solvation = -21642.360152 eV Core-core repulsion = 18199.355739 eV Total energy + Delta-G solvation = -3443.004413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.17397 -41.53949 -40.00109 -38.28739 -36.84251 -34.74289 -33.51323 -31.84732 -30.21816 -28.47230 -25.36624 -23.65076 -23.44098 -23.08317 -21.89160 -21.17676 -19.33838 -18.71201 -18.23715 -17.87936 -17.36957 -16.91257 -16.63937 -16.34247 -15.72736 -15.41437 -15.30349 -15.09748 -14.47161 -14.33429 -13.99160 -13.69992 -13.50719 -13.31749 -13.08665 -12.98930 -12.79949 -12.30078 -12.19979 -12.10983 -11.95739 -11.82849 -11.46886 -11.25949 -10.96787 -10.64524 -10.47720 -9.90479 -9.85526 -8.23930 -6.41487 0.17529 0.46483 1.03077 1.42044 1.43271 1.53298 1.68699 2.38988 2.79012 3.03539 3.15123 3.16339 3.58019 3.69153 3.91241 4.07955 4.13203 4.17772 4.27462 4.27612 4.39627 4.56555 4.60165 4.67419 4.77990 4.93536 5.08554 5.11437 5.20712 5.34384 5.43478 5.47482 5.50389 5.52623 5.56228 5.77450 6.02072 6.04786 6.56879 6.80480 7.27820 8.82346 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027308 B = 0.004897 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.080566 B = 5716.471026 C = 6222.167090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.975 3.025 4 H -0.275 1.275 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.559 4.559 8 H 0.065 0.935 9 C 0.253 3.747 10 H 0.007 0.993 11 O -0.351 6.351 12 C 0.431 3.569 13 O -0.516 6.516 14 C 0.159 3.841 15 H 0.151 0.849 16 F -0.189 7.189 17 C -0.150 4.150 18 C -0.096 4.096 19 C -0.135 4.135 20 C -0.102 4.102 21 C -0.125 4.125 22 C -0.094 4.094 23 C -0.131 4.131 24 C -0.123 4.123 25 C -0.197 4.197 26 H 0.268 0.732 27 H 0.106 0.894 28 H 0.140 0.860 29 H 0.156 0.844 30 H 0.160 0.840 31 H 0.153 0.847 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.776 -16.616 4.112 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.798 3.202 4 H -0.201 1.201 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.083 0.917 9 C 0.200 3.800 10 H 0.025 0.975 11 O -0.267 6.267 12 C 0.272 3.728 13 O -0.406 6.406 14 C 0.122 3.878 15 H 0.169 0.831 16 F -0.170 7.170 17 C -0.150 4.150 18 C -0.114 4.114 19 C -0.153 4.153 20 C -0.120 4.120 21 C -0.143 4.143 22 C -0.112 4.112 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.234 4.234 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.158 0.842 29 H 0.174 0.826 30 H 0.178 0.822 31 H 0.171 0.829 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.283 -16.462 3.939 17.080 hybrid contribution -0.025 1.390 -0.663 1.540 sum 2.258 -15.072 3.276 15.588 Atomic orbital electron populations 1.70151 1.07014 1.28061 1.47753 1.25702 0.95942 1.02255 0.93589 0.85310 0.78638 0.77811 0.78396 1.20111 1.20096 1.18874 1.21173 0.93881 0.89566 1.55000 0.91689 1.19959 0.86125 0.80957 0.92916 0.97486 1.86490 1.48890 1.22154 1.69205 1.24415 0.87482 0.85497 0.75368 1.90569 1.23507 1.83295 1.43194 1.19997 0.95805 0.88910 0.83066 0.83127 1.92886 1.86780 1.96417 1.40877 1.19767 0.99845 0.96211 0.99195 1.21140 0.94549 0.96475 0.99256 1.21414 1.00243 0.94884 0.98721 1.21674 0.96846 1.00043 0.93392 1.21533 0.95784 0.96107 1.00851 1.21349 1.00207 0.95116 0.94498 1.22396 0.93247 1.00066 0.99274 1.22289 0.94773 0.98306 1.00615 1.23241 1.06329 0.91552 1.02234 0.92304 0.87550 0.84176 0.82640 0.82217 0.82932 0.89844 0.89102 0.91812 0.89889 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.00 11.43 21.45 0.25 -49.75 16 2 C 0.03 1.50 5.30 84.65 0.45 1.94 16 3 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.56 -31.59 8.88 25.60 0.23 -31.36 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.25 13.71 2.25 29.85 0.07 13.78 16 10 H 0.01 0.45 6.91 -2.39 -0.02 0.44 16 11 O -0.35 -16.87 9.85 -51.49 -0.51 -17.38 16 12 C 0.43 18.30 6.51 71.24 0.46 18.76 16 13 O -0.52 -24.42 12.22 21.97 0.27 -24.15 16 14 C 0.16 5.08 4.07 29.10 0.12 5.20 16 15 H 0.15 3.73 7.88 -2.39 -0.02 3.72 16 16 F -0.19 -6.46 16.92 44.97 0.76 -5.70 16 17 C -0.15 -4.25 5.01 -19.86 -0.10 -4.35 16 18 C -0.10 -2.84 8.57 22.27 0.19 -2.64 16 19 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 20 C -0.10 -1.81 10.05 22.27 0.22 -1.58 16 21 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 22 C -0.09 -2.00 9.67 22.27 0.22 -1.79 16 23 C -0.13 -6.44 4.47 -10.79 -0.05 -6.49 16 24 C -0.12 -5.68 9.04 30.62 0.28 -5.40 16 25 C -0.20 -8.30 9.80 30.62 0.30 -8.00 16 26 H 0.27 14.12 8.31 -92.72 -0.77 13.35 16 27 H 0.11 3.58 7.39 -2.91 -0.02 3.56 16 28 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 29 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 31 H 0.15 2.41 7.95 -2.91 -0.02 2.38 16 32 H 0.08 4.18 8.11 -2.39 -0.02 4.16 16 33 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 34 H 0.06 3.25 8.05 -2.39 -0.02 3.23 16 35 H 0.08 3.70 5.38 -2.38 -0.01 3.69 16 36 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 Total: -1.00 -66.71 313.25 6.71 -60.00 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.09 Total: 18.96 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 2.83 Total: -26.71 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.25 Total: -49.75 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -0.24 Total: -41.54 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.76 Total: -5.70 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -66.71 6.71 -60.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659381.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.024 kcal (2) G-P(sol) polarization free energy of solvation -66.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds