Wall clock time and date at job start Mon Mar 30 2020 23:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99452 * 2 1 4 4 H 1.48507 * 109.47118 * 269.99634 * 3 2 1 5 5 H 1.48500 * 109.47527 * 29.99781 * 3 2 1 6 6 H 1.48498 * 109.47247 * 150.00075 * 3 2 1 7 7 C 1.37875 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99586 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00174 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46999 * 60.00212 * 9 7 2 11 11 O 1.45204 * 109.47129 * 179.97438 * 9 7 2 12 12 C 1.34225 * 116.99967 * 209.99692 * 11 9 7 13 13 O 1.20825 * 120.00070 * 0.02562 * 12 11 9 14 14 C 1.50702 * 119.99772 * 180.02562 * 12 11 9 15 15 H 1.09004 * 109.46909 * 345.00264 * 14 12 11 16 16 F 1.39897 * 109.47311 * 105.00259 * 14 12 11 17 17 C 1.50703 * 109.47036 * 225.00679 * 14 12 11 18 18 C 1.38235 * 120.00292 * 115.00044 * 17 14 12 19 19 C 1.38230 * 119.99899 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00326 * 359.95697 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99503 * 294.97336 * 17 14 12 23 23 C 1.52995 * 109.47306 * 299.99828 * 9 7 2 24 24 C 1.52998 * 117.49888 * 248.74975 * 23 9 7 25 25 C 1.52995 * 117.50227 * 180.08652 * 23 9 7 26 26 H 0.96999 * 120.00798 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99730 * 359.97438 * 18 17 14 28 28 H 1.08000 * 120.00376 * 179.97438 * 19 18 17 29 29 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 30 30 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 31 31 H 1.07997 * 120.00455 * 0.02562 * 22 17 14 32 32 H 1.09010 * 115.54691 * 34.41401 * 23 9 7 33 33 H 1.08994 * 117.50000 * 359.97438 * 24 23 9 34 34 H 1.09005 * 117.49987 * 145.02026 * 24 23 9 35 35 H 1.09000 * 117.50125 * 214.97792 * 25 23 9 36 36 H 1.09001 * 117.49829 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 1 0.6249 -2.5571 -0.8897 11 8 2.1948 -3.6028 0.0005 12 6 1.8036 -4.7390 -0.5974 13 8 0.7091 -4.8090 -1.1044 14 6 2.7295 -5.9274 -0.6363 15 1 3.7401 -5.6091 -0.3801 16 9 2.2954 -6.8871 0.2844 17 6 2.7259 -6.5218 -2.0211 18 6 3.8766 -6.4973 -2.7868 19 6 3.8734 -7.0431 -4.0568 20 6 2.7198 -7.6142 -4.5609 21 6 1.5696 -7.6399 -3.7946 22 6 1.5721 -7.0921 -2.5254 23 6 0.3711 -2.5800 1.2494 24 6 0.7524 -3.6075 2.3170 25 6 -0.4774 -3.8395 1.4355 26 1 -0.4851 0.8400 -0.0004 27 1 4.7780 -6.0518 -2.3928 28 1 4.7722 -7.0236 -4.6553 29 1 2.7160 -8.0366 -5.5548 30 1 0.6681 -8.0857 -4.1885 31 1 0.6731 -7.1113 -1.9272 32 1 -0.0509 -1.6341 1.5892 33 1 1.6299 -4.2262 2.1294 34 1 0.5808 -3.3379 3.3591 35 1 -1.4574 -3.7224 1.8980 36 1 -0.4089 -4.6103 0.6679 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659382.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:29 Heat of formation + Delta-G solvation = -81.666547 kcal Electronic energy + Delta-G solvation = -21629.865539 eV Core-core repulsion = 18187.526903 eV Total energy + Delta-G solvation = -3442.338636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.87569 -39.97706 -39.00183 -36.57810 -34.85277 -32.86691 -32.43530 -30.94380 -28.45406 -27.06694 -23.51650 -22.69131 -22.23546 -21.46994 -20.52748 -19.14273 -17.51623 -17.28037 -17.01998 -16.15516 -16.06115 -15.54736 -15.32681 -14.69368 -14.38659 -14.32248 -13.83507 -13.45017 -13.25481 -12.76474 -12.62184 -12.37852 -12.15664 -11.62194 -11.41667 -11.19524 -11.15860 -10.99594 -10.95313 -10.59546 -10.35647 -10.14325 -9.78937 -9.54139 -9.19546 -8.95025 -8.92471 -8.58544 -8.49339 -6.23794 -4.31610 1.14554 1.37752 2.62142 3.13805 3.22293 3.28621 3.34284 3.74565 4.26268 4.30206 4.66722 4.87207 4.91347 4.97594 5.07191 5.09190 5.23837 5.38526 5.44250 5.59245 5.82278 5.83888 6.00965 6.04788 6.10206 6.34678 6.44753 6.45174 6.48441 6.62360 6.76715 6.90708 6.98832 7.11687 7.46301 7.52447 7.74095 8.03114 8.40575 8.77418 9.32942 10.83380 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020365 B = 0.005200 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.588546 B = 5383.349989 C = 6073.054322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.911 3.089 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.520 4.520 8 H 0.071 0.929 9 C 0.248 3.752 10 H 0.054 0.946 11 O -0.343 6.343 12 C 0.436 3.564 13 O -0.489 6.489 14 C 0.150 3.850 15 H 0.119 0.881 16 F -0.182 7.182 17 C -0.128 4.128 18 C -0.092 4.092 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.127 4.127 22 C -0.068 4.068 23 C -0.118 4.118 24 C -0.193 4.193 25 C -0.209 4.209 26 H 0.267 0.733 27 H 0.129 0.871 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -12.687 -4.539 14.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.738 3.262 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.558 4.558 8 H 0.089 0.911 9 C 0.196 3.804 10 H 0.072 0.928 11 O -0.259 6.259 12 C 0.275 3.725 13 O -0.377 6.377 14 C 0.113 3.887 15 H 0.137 0.863 16 F -0.162 7.162 17 C -0.128 4.128 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.125 4.125 21 C -0.145 4.145 22 C -0.086 4.086 23 C -0.137 4.137 24 C -0.230 4.230 25 C -0.246 4.246 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.367 -12.537 -4.640 14.405 hybrid contribution 0.089 0.878 0.140 0.894 sum 5.456 -11.659 -4.501 13.637 Atomic orbital electron populations 1.69976 1.05933 1.27449 1.48802 1.24902 0.95058 0.99315 0.94503 0.86286 0.79680 0.81930 0.78351 1.20360 1.20908 1.19499 1.20928 0.93992 0.88185 1.52692 0.91065 1.20249 0.85917 0.80026 0.94216 0.92848 1.86511 1.49449 1.21835 1.68059 1.23406 0.86824 0.85711 0.76518 1.90601 1.21920 1.82981 1.42186 1.19823 0.99115 0.83680 0.86115 0.86347 1.92907 1.91768 1.64253 1.67277 1.19759 0.95579 1.02588 0.94888 1.21023 0.97203 0.98299 0.94433 1.21077 0.98570 0.99427 0.95599 1.21245 0.93105 0.98607 0.99585 1.21169 0.98454 1.00438 0.94420 1.21154 0.97488 0.94288 0.95635 1.23027 0.99307 0.93889 0.97433 1.22807 0.98586 1.05685 0.95920 1.23143 0.94631 1.03341 1.03519 0.92308 0.85303 0.85634 0.85916 0.85679 0.84935 0.85102 0.89804 0.90260 0.90388 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.62 11.59 55.43 0.64 -23.97 16 2 C 0.07 1.75 5.20 -17.82 -0.09 1.66 16 3 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 7 C -0.52 -14.20 8.90 -34.44 -0.31 -14.51 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.25 6.47 2.41 -27.89 -0.07 6.40 16 10 H 0.05 1.55 7.15 -51.93 -0.37 1.18 16 11 O -0.34 -7.89 8.39 -39.24 -0.33 -8.22 16 12 C 0.44 8.94 6.24 36.01 0.22 9.16 16 13 O -0.49 -11.03 12.25 -18.75 -0.23 -11.26 16 14 C 0.15 2.39 4.07 -29.03 -0.12 2.27 16 15 H 0.12 1.55 7.89 -51.93 -0.41 1.14 16 16 F -0.18 -2.99 16.92 2.25 0.04 -2.95 16 17 C -0.13 -1.88 5.01 -104.62 -0.52 -2.41 16 18 C -0.09 -1.12 9.67 -39.59 -0.38 -1.51 16 19 C -0.13 -1.39 10.05 -39.59 -0.40 -1.79 16 20 C -0.11 -1.16 10.05 -39.58 -0.40 -1.55 16 21 C -0.13 -1.55 10.05 -39.58 -0.40 -1.94 16 22 C -0.07 -1.00 8.57 -39.58 -0.34 -1.34 16 23 C -0.12 -2.91 5.27 -90.63 -0.48 -3.39 16 24 C -0.19 -4.11 9.80 -26.69 -0.26 -4.37 16 25 C -0.21 -4.62 9.85 -26.70 -0.26 -4.88 16 26 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.13 1.28 7.95 -52.49 -0.42 0.86 16 28 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 31 H 0.13 2.07 7.41 -52.49 -0.39 1.68 16 32 H 0.13 3.50 6.46 -51.92 -0.34 3.17 16 33 H 0.08 1.76 6.91 -51.93 -0.36 1.40 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.09 2.09 5.37 -51.93 -0.28 1.81 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -29.79 310.84 -8.24 -38.02 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.22 Total: 6.28 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.80 Total: -18.19 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.64 Total: -23.97 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.56 Total: -19.48 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.79 -8.24 -38.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659382.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.643 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds