Wall clock time and date at job start Mon Mar 30 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99663 * 2 1 4 4 H 1.48505 * 109.47181 * 269.99498 * 3 2 1 5 5 H 1.48494 * 109.47613 * 30.00047 * 3 2 1 6 6 H 1.48504 * 109.47083 * 150.00117 * 3 2 1 7 7 C 1.37873 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00106 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46773 * 300.00124 * 9 7 2 11 11 O 1.45197 * 109.47284 * 180.02562 * 9 7 2 12 12 C 1.34231 * 117.00206 * 149.99769 * 11 9 7 13 13 O 1.20827 * 119.99743 * 359.97438 * 12 11 9 14 14 C 1.50691 * 120.00370 * 179.97438 * 12 11 9 15 15 H 1.09008 * 109.47036 * 344.99846 * 14 12 11 16 16 F 1.39898 * 109.47251 * 105.00006 * 14 12 11 17 17 C 1.50702 * 109.47504 * 225.00238 * 14 12 11 18 18 C 1.38234 * 120.00271 * 114.99466 * 17 14 12 19 19 C 1.38230 * 119.99880 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99485 * 294.97594 * 17 14 12 23 23 C 1.52999 * 109.47231 * 59.99512 * 9 7 2 24 24 C 1.53005 * 117.49998 * 248.75071 * 23 9 7 25 25 C 1.52997 * 117.49806 * 180.08791 * 23 9 7 26 26 H 0.97001 * 119.99692 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99769 * 359.97438 * 18 17 14 28 28 H 1.08000 * 120.00376 * 180.02562 * 19 18 17 29 29 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 30 30 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 31 31 H 1.07997 * 120.00489 * 0.02562 * 22 17 14 32 32 H 1.08998 * 115.55037 * 34.42281 * 23 9 7 33 33 H 1.08996 * 117.50016 * 359.97438 * 24 23 9 34 34 H 1.08994 * 117.49325 * 145.02005 * 24 23 9 35 35 H 1.09002 * 117.49964 * 214.97847 * 25 23 9 36 36 H 1.09003 * 117.50252 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 2.1947 -3.6027 0.0018 12 6 1.8031 -4.7388 0.6000 13 8 0.7083 -4.8085 1.1063 14 6 2.7289 -5.9271 0.6402 15 1 3.5376 -5.7820 -0.0761 16 9 3.2631 -6.0588 1.9264 17 6 1.9611 -7.1743 0.2850 18 6 2.2690 -7.8705 -0.8689 19 6 1.5651 -9.0147 -1.1943 20 6 0.5537 -9.4633 -0.3656 21 6 0.2465 -8.7677 0.7888 22 6 0.9493 -7.6224 1.1134 23 6 0.3719 -2.5805 -1.2489 24 6 -1.1439 -2.5129 -1.0518 25 6 -0.4795 -3.8383 -1.4329 26 1 -0.4850 0.8401 -0.0004 27 1 3.0595 -7.5203 -1.5161 28 1 1.8059 -9.5589 -2.0956 29 1 0.0007 -10.3548 -0.6221 30 1 -0.5440 -9.1178 1.4361 31 1 0.7086 -7.0785 2.0149 32 1 0.7841 -2.1164 -2.1449 33 1 -1.5147 -2.4109 -0.0320 34 1 -1.7287 -2.0046 -1.8183 35 1 -0.6278 -4.2014 -2.4500 36 1 -0.4129 -4.6081 -0.6641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:34 Heat of formation + Delta-G solvation = -82.774267 kcal Electronic energy + Delta-G solvation = -21641.143675 eV Core-core repulsion = 18198.757005 eV Total energy + Delta-G solvation = -3442.386670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -47.84351 -39.88385 -38.95323 -36.47577 -35.02516 -32.69666 -32.42313 -30.94310 -28.41826 -27.03257 -23.44170 -22.68715 -22.16023 -21.27802 -20.45482 -19.31288 -17.64551 -17.29380 -16.75196 -16.26374 -15.94216 -15.63960 -14.96730 -14.63401 -14.37911 -14.24151 -13.89843 -13.46396 -13.36804 -12.77750 -12.61018 -12.41775 -12.09178 -11.53050 -11.42627 -11.15660 -11.10600 -11.00549 -10.91192 -10.46424 -10.30905 -9.87503 -9.75309 -9.45593 -9.09457 -8.94375 -8.91298 -8.70737 -8.46501 -6.18379 -4.26797 1.14886 1.37715 2.66201 3.16389 3.23951 3.30558 3.36639 3.74822 4.29492 4.31856 4.68215 4.88639 4.95197 4.99415 5.07613 5.12749 5.26237 5.44075 5.48910 5.60240 5.83357 5.91479 6.01155 6.11451 6.33088 6.34795 6.45062 6.48806 6.51406 6.59433 6.90348 6.96324 7.11002 7.18191 7.32598 7.56179 7.79268 8.03001 8.45028 8.81778 9.37909 10.88320 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.004896 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.961212 B = 5717.512630 C = 6223.037594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.070 3.930 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.530 4.530 8 H 0.070 0.930 9 C 0.248 3.752 10 H 0.050 0.950 11 O -0.343 6.343 12 C 0.438 3.562 13 O -0.492 6.492 14 C 0.151 3.849 15 H 0.119 0.881 16 F -0.182 7.182 17 C -0.126 4.126 18 C -0.092 4.092 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.068 4.068 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.228 4.228 26 H 0.265 0.735 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -15.184 -2.117 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.567 4.567 8 H 0.088 0.912 9 C 0.196 3.804 10 H 0.068 0.932 11 O -0.258 6.258 12 C 0.278 3.722 13 O -0.381 6.381 14 C 0.113 3.887 15 H 0.136 0.864 16 F -0.163 7.163 17 C -0.127 4.127 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.126 4.126 21 C -0.145 4.145 22 C -0.086 4.086 23 C -0.135 4.135 24 C -0.159 4.159 25 C -0.265 4.265 26 H 0.074 0.926 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.151 0.849 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.715 -15.006 -1.941 15.227 hybrid contribution 0.197 1.048 -0.021 1.067 sum 1.912 -13.957 -1.962 14.224 Atomic orbital electron populations 1.70047 1.05774 1.27092 1.47913 1.24875 0.95041 0.99093 0.94444 0.86337 0.79718 0.82181 0.78272 1.20411 1.21007 1.19618 1.20895 0.93882 0.88229 1.53736 0.91184 1.20319 0.86083 0.80172 0.93793 0.93241 1.86501 1.49327 1.21659 1.68347 1.23367 0.86852 0.85346 0.76638 1.90589 1.21980 1.82975 1.42540 1.19824 0.95668 0.90389 0.82802 0.86372 1.92905 1.86829 1.96543 1.39976 1.19762 0.99119 0.96247 0.97545 1.21013 0.99540 0.94915 0.95494 1.21069 0.96798 0.96838 0.99985 1.21237 0.97149 0.99591 0.94588 1.21167 1.00108 0.95599 0.97591 1.21160 0.93035 0.94994 0.99382 1.22599 0.92953 0.97521 1.00392 1.22367 0.95430 0.96688 1.01452 1.23273 1.09430 0.92936 1.00885 0.92564 0.85353 0.85690 0.85961 0.85711 0.84919 0.89216 0.89322 0.90703 0.90998 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.97 11.43 55.43 0.63 -23.34 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.58 8.88 -34.44 -0.31 -14.88 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.25 6.48 2.25 -27.88 -0.06 6.41 16 10 H 0.05 1.43 6.91 -51.93 -0.36 1.07 16 11 O -0.34 -7.99 9.85 -39.26 -0.39 -8.38 16 12 C 0.44 9.03 6.51 36.00 0.23 9.27 16 13 O -0.49 -11.08 12.25 -18.75 -0.23 -11.31 16 14 C 0.15 2.41 4.07 -29.04 -0.12 2.29 16 15 H 0.12 1.55 7.89 -51.92 -0.41 1.14 16 16 F -0.18 -3.05 16.92 2.25 0.04 -3.01 16 17 C -0.13 -1.84 5.01 -104.62 -0.52 -2.36 16 18 C -0.09 -1.10 9.67 -39.59 -0.38 -1.49 16 19 C -0.13 -1.37 10.05 -39.59 -0.40 -1.76 16 20 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 21 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 22 C -0.07 -0.99 8.57 -39.58 -0.34 -1.33 16 23 C -0.12 -2.80 4.47 -90.62 -0.41 -3.21 16 24 C -0.12 -2.80 9.04 -26.69 -0.24 -3.04 16 25 C -0.23 -4.89 9.80 -26.69 -0.26 -5.15 16 26 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.13 1.25 7.95 -52.49 -0.42 0.83 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.13 2.06 7.41 -52.49 -0.39 1.68 16 32 H 0.09 2.23 8.11 -51.93 -0.42 1.81 16 33 H 0.09 2.17 8.05 -51.93 -0.42 1.75 16 34 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 2.06 5.38 -51.93 -0.28 1.78 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -29.69 313.28 -8.29 -37.98 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -4.35 Total: 4.50 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -3.69 Total: -16.92 kcal Atomic # 7 Polarization: -23.97 SS G_CDS: 0.63 Total: -23.34 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.62 Total: -19.69 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.04 Total: -3.01 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.69 -8.29 -37.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.792 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds