Wall clock time and date at job start Mon Mar 30 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99663 * 2 1 4 4 H 1.48505 * 109.47181 * 269.99498 * 3 2 1 5 5 H 1.48494 * 109.47613 * 30.00047 * 3 2 1 6 6 H 1.48504 * 109.47083 * 150.00117 * 3 2 1 7 7 C 1.37873 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00116 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00106 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.46773 * 300.00124 * 9 7 2 11 11 O 1.45197 * 109.47284 * 180.02562 * 9 7 2 12 12 C 1.34231 * 117.00206 * 149.99769 * 11 9 7 13 13 O 1.20827 * 119.99743 * 359.97438 * 12 11 9 14 14 C 1.50691 * 120.00370 * 179.97438 * 12 11 9 15 15 H 1.09008 * 109.47036 * 344.99846 * 14 12 11 16 16 F 1.39898 * 109.47251 * 105.00006 * 14 12 11 17 17 C 1.50702 * 109.47504 * 225.00238 * 14 12 11 18 18 C 1.38234 * 120.00271 * 114.99466 * 17 14 12 19 19 C 1.38230 * 119.99880 * 179.97438 * 18 17 14 20 20 C 1.38235 * 120.00326 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99814 * 359.97438 * 20 19 18 22 22 C 1.38234 * 119.99485 * 294.97594 * 17 14 12 23 23 C 1.52999 * 109.47231 * 59.99512 * 9 7 2 24 24 C 1.53005 * 117.49998 * 248.75071 * 23 9 7 25 25 C 1.52997 * 117.49806 * 180.08791 * 23 9 7 26 26 H 0.97001 * 119.99692 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99769 * 359.97438 * 18 17 14 28 28 H 1.08000 * 120.00376 * 180.02562 * 19 18 17 29 29 H 1.08000 * 120.00616 * 179.72578 * 20 19 18 30 30 H 1.08001 * 120.00299 * 179.97438 * 21 20 19 31 31 H 1.07997 * 120.00489 * 0.02562 * 22 17 14 32 32 H 1.08998 * 115.55037 * 34.42281 * 23 9 7 33 33 H 1.08996 * 117.50016 * 359.97438 * 24 23 9 34 34 H 1.08994 * 117.49325 * 145.02005 * 24 23 9 35 35 H 1.09002 * 117.49964 * 214.97847 * 25 23 9 36 36 H 1.09003 * 117.50252 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 1 0.6242 -2.5567 0.8903 11 8 2.1947 -3.6027 0.0018 12 6 1.8031 -4.7388 0.6000 13 8 0.7083 -4.8085 1.1063 14 6 2.7289 -5.9271 0.6402 15 1 3.5376 -5.7820 -0.0761 16 9 3.2631 -6.0588 1.9264 17 6 1.9611 -7.1743 0.2850 18 6 2.2690 -7.8705 -0.8689 19 6 1.5651 -9.0147 -1.1943 20 6 0.5537 -9.4633 -0.3656 21 6 0.2465 -8.7677 0.7888 22 6 0.9493 -7.6224 1.1134 23 6 0.3719 -2.5805 -1.2489 24 6 -1.1439 -2.5129 -1.0518 25 6 -0.4795 -3.8383 -1.4329 26 1 -0.4850 0.8401 -0.0004 27 1 3.0595 -7.5203 -1.5161 28 1 1.8059 -9.5589 -2.0956 29 1 0.0007 -10.3548 -0.6221 30 1 -0.5440 -9.1178 1.4361 31 1 0.7086 -7.0785 2.0149 32 1 0.7841 -2.1164 -2.1449 33 1 -1.5147 -2.4109 -0.0320 34 1 -1.7287 -2.0046 -1.8183 35 1 -0.6278 -4.2014 -2.4500 36 1 -0.4129 -4.6081 -0.6641 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659384.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:46:34 Heat of formation + Delta-G solvation = -97.032246 kcal Electronic energy + Delta-G solvation = -21641.761948 eV Core-core repulsion = 18198.757005 eV Total energy + Delta-G solvation = -3443.004943 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.17362 -41.53942 -40.00150 -38.28703 -36.84288 -34.74245 -33.51326 -31.84720 -30.21849 -28.47315 -25.36631 -23.65072 -23.44166 -23.08430 -21.89138 -21.17666 -19.33863 -18.71234 -18.23724 -17.88016 -17.36942 -16.91204 -16.63921 -16.34294 -15.72763 -15.41403 -15.30410 -15.09756 -14.47125 -14.33346 -13.99308 -13.70037 -13.50626 -13.31895 -13.08735 -12.97418 -12.81412 -12.29771 -12.21074 -12.10979 -11.95705 -11.81283 -11.47432 -11.26021 -10.97560 -10.65059 -10.46830 -9.90484 -9.85511 -8.23961 -6.41504 0.17564 0.46456 1.03079 1.42054 1.43516 1.52998 1.68751 2.38988 2.79030 3.03423 3.15089 3.16275 3.57966 3.69135 3.91208 4.07948 4.13145 4.17730 4.27423 4.27577 4.39590 4.56542 4.60140 4.67388 4.77994 4.93520 5.08519 5.11409 5.20646 5.34342 5.43463 5.47467 5.50400 5.52597 5.56216 5.77417 6.02058 6.04746 6.56853 6.80479 7.27814 8.82286 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.004896 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.961212 B = 5717.512630 C = 6223.037594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.559 4.559 8 H 0.065 0.935 9 C 0.253 3.747 10 H 0.008 0.992 11 O -0.351 6.351 12 C 0.431 3.569 13 O -0.516 6.516 14 C 0.159 3.841 15 H 0.151 0.849 16 F -0.189 7.189 17 C -0.150 4.150 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.102 4.102 21 C -0.135 4.135 22 C -0.096 4.096 23 C -0.131 4.131 24 C -0.122 4.122 25 C -0.197 4.197 26 H 0.268 0.732 27 H 0.153 0.847 28 H 0.160 0.840 29 H 0.156 0.844 30 H 0.140 0.860 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -16.613 -4.109 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.596 4.596 8 H 0.083 0.917 9 C 0.200 3.800 10 H 0.025 0.975 11 O -0.267 6.267 12 C 0.272 3.728 13 O -0.406 6.406 14 C 0.122 3.878 15 H 0.169 0.831 16 F -0.170 7.170 17 C -0.150 4.150 18 C -0.112 4.112 19 C -0.143 4.143 20 C -0.120 4.120 21 C -0.153 4.153 22 C -0.114 4.114 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.234 4.234 26 H 0.077 0.923 27 H 0.171 0.829 28 H 0.178 0.822 29 H 0.174 0.826 30 H 0.158 0.842 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.273 -16.459 -3.928 17.073 hybrid contribution -0.021 1.388 0.642 1.530 sum 2.252 -15.071 -3.286 15.588 Atomic orbital electron populations 1.70157 1.07012 1.28050 1.47757 1.25703 0.95944 1.02257 0.93586 0.85305 0.78377 0.77746 0.78695 1.19303 1.20443 1.19347 1.21172 0.93875 0.89569 1.55007 0.91702 1.19959 0.86128 0.80955 0.92914 0.97472 1.86486 1.48876 1.22174 1.69198 1.24412 0.87485 0.85496 0.75368 1.90570 1.23479 1.83299 1.43221 1.19998 0.95812 0.88910 0.83065 0.83126 1.92887 1.86783 1.96418 1.40873 1.19764 0.99883 0.96185 0.99176 1.21346 1.00190 0.95110 0.94529 1.21532 0.95800 0.96098 1.00839 1.21673 0.96862 1.00039 0.93387 1.21415 1.00213 0.94896 0.98733 1.21139 0.94580 0.96471 0.99227 1.22397 0.93257 1.00069 0.99267 1.22290 0.94762 0.98299 1.00622 1.23241 1.06334 0.91550 1.02236 0.92309 0.82932 0.82217 0.82642 0.84173 0.87555 0.89866 0.91806 0.89093 0.87734 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.99 11.43 21.45 0.25 -49.75 16 2 C 0.03 1.49 5.30 84.65 0.45 1.94 16 3 Si 0.98 42.72 29.54 68.60 2.03 44.75 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.56 -31.60 8.88 25.60 0.23 -31.37 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 9 C 0.25 13.71 2.25 29.85 0.07 13.78 16 10 H 0.01 0.46 6.91 -2.39 -0.02 0.44 16 11 O -0.35 -16.88 9.85 -51.42 -0.51 -17.38 16 12 C 0.43 18.31 6.51 71.23 0.46 18.77 16 13 O -0.52 -24.43 12.25 21.96 0.27 -24.16 16 14 C 0.16 5.08 4.07 29.10 0.12 5.20 16 15 H 0.15 3.74 7.89 -2.38 -0.02 3.72 16 16 F -0.19 -6.46 16.92 44.97 0.76 -5.70 16 17 C -0.15 -4.25 5.01 -19.87 -0.10 -4.35 16 18 C -0.09 -2.00 9.67 22.27 0.22 -1.79 16 19 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 20 C -0.10 -1.81 10.05 22.27 0.22 -1.59 16 21 C -0.13 -3.07 10.05 22.27 0.22 -2.85 16 22 C -0.10 -2.83 8.57 22.27 0.19 -2.64 16 23 C -0.13 -6.44 4.47 -10.79 -0.05 -6.49 16 24 C -0.12 -5.68 9.04 30.62 0.28 -5.40 16 25 C -0.20 -8.31 9.80 30.62 0.30 -8.01 16 26 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.15 2.41 7.95 -2.91 -0.02 2.38 16 28 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 30 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 31 H 0.11 3.58 7.41 -2.91 -0.02 3.55 16 32 H 0.08 4.17 8.11 -2.39 -0.02 4.16 16 33 H 0.06 3.26 8.05 -2.39 -0.02 3.24 16 34 H 0.09 3.86 8.14 -2.39 -0.02 3.85 16 35 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 36 H 0.08 3.71 5.38 -2.39 -0.01 3.69 16 Total: -1.00 -66.72 313.28 6.71 -60.01 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 1.09 Total: 18.95 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 2.83 Total: -26.71 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.25 Total: -49.75 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.24 Total: -41.55 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 0.76 Total: -5.70 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -66.72 6.71 -60.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659384.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.026 kcal (2) G-P(sol) polarization free energy of solvation -66.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds