Wall clock time and date at job start Tue Mar 31 2020 00:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38469 * 119.88722 * 2 1 4 4 C 1.38206 * 120.35051 * 179.97438 * 3 2 1 5 5 C 1.38312 * 120.12252 * 0.02562 * 4 3 2 6 6 F 1.35097 * 120.11525 * 179.97438 * 5 4 3 7 7 C 1.39883 * 119.77376 * 359.97438 * 5 4 3 8 8 C 1.47563 * 120.17227 * 179.97438 * 7 5 4 9 9 O 1.21485 * 120.00055 * 0.02562 * 8 7 5 10 10 O 1.34729 * 119.99713 * 180.02562 * 8 7 5 11 11 C 1.45206 * 116.99812 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47078 * 330.00195 * 11 10 8 13 13 C 1.50704 * 109.47006 * 209.99993 * 11 10 8 14 14 H 1.07998 * 119.99806 * 0.02562 * 13 11 10 15 15 C 1.37876 * 119.99865 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99732 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 119.99950 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47327 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47422 * 119.99942 * 17 15 13 20 20 H 1.48500 * 109.47345 * 239.99890 * 17 15 13 21 21 C 1.53000 * 109.47102 * 89.99952 * 11 10 8 22 22 C 1.53002 * 117.49702 * 8.74747 * 21 11 10 23 23 C 1.53000 * 117.49832 * 300.09133 * 21 11 10 24 24 C 1.37839 * 119.88672 * 180.25518 * 2 1 3 25 25 H 1.09001 * 109.47541 * 90.00119 * 1 2 3 26 26 H 1.09000 * 109.47256 * 210.00315 * 1 2 3 27 27 H 1.09007 * 109.47456 * 330.00163 * 1 2 3 28 28 H 1.08005 * 119.82677 * 359.95337 * 3 2 1 29 29 H 1.07999 * 119.93808 * 180.02562 * 4 3 2 30 30 H 0.97002 * 119.99723 * 180.02562 * 16 15 13 31 31 H 1.08999 * 115.54857 * 154.41158 * 21 11 10 32 32 H 1.08997 * 117.49959 * 0.02562 * 22 21 11 33 33 H 1.08998 * 117.49994 * 145.02187 * 22 21 11 34 34 H 1.09004 * 117.49736 * 214.97935 * 23 21 11 35 35 H 1.08999 * 117.50060 * 359.97195 * 23 21 11 36 36 H 1.08000 * 120.06425 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2005 0.0000 4 6 3.5790 1.2117 0.0005 5 6 4.2828 0.0210 0.0005 6 9 5.6337 0.0321 0.0005 7 6 3.5910 -1.1948 0.0005 8 6 4.3329 -2.4703 0.0000 9 8 5.5478 -2.4663 0.0000 10 8 3.6631 -3.6392 -0.0005 11 6 4.4579 -4.8544 -0.0005 12 1 5.4018 -4.6712 -0.5139 13 6 3.7033 -5.9482 -0.7115 14 1 2.7245 -5.7497 -1.1226 15 6 4.2625 -7.2022 -0.8370 16 7 5.4546 -7.4436 -0.3368 17 14 3.3275 -8.5577 -1.7189 18 1 2.0192 -8.0333 -2.1864 19 1 4.1185 -9.0269 -2.8848 20 1 3.1013 -9.6907 -0.7860 21 6 4.7365 -5.2816 1.4420 22 6 4.0000 -4.5334 2.5550 23 6 5.4966 -4.2992 2.3354 24 6 2.1938 -1.1951 -0.0053 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6523 2.1332 -0.0008 29 1 4.1104 2.1519 0.0009 30 1 5.8482 -8.3258 -0.4255 31 1 4.9244 -6.3451 1.5894 32 1 3.3166 -3.7373 2.2596 33 1 3.7039 -5.1046 3.4349 34 1 6.1845 -4.7164 3.0708 35 1 5.7986 -3.3488 1.8953 36 1 1.6530 -2.1299 -0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263659930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:17 Heat of formation + Delta-G solvation = -85.408961 kcal Electronic energy + Delta-G solvation = -21617.824563 eV Core-core repulsion = 18175.323644 eV Total energy + Delta-G solvation = -3442.500919 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.74921 -39.97839 -38.79640 -36.41927 -34.71260 -32.83011 -32.55651 -31.53380 -27.90957 -26.71710 -24.50304 -23.26484 -22.17208 -21.43602 -20.32673 -19.01948 -17.70481 -17.04420 -16.85210 -16.23630 -15.82755 -15.49018 -15.26413 -14.67193 -14.35678 -14.08126 -13.88583 -13.71696 -13.36701 -12.98438 -12.47338 -12.17830 -12.09647 -11.75542 -11.54529 -11.40013 -11.31796 -11.09830 -10.99278 -10.57386 -10.31851 -10.07035 -9.75771 -9.49015 -9.20408 -9.13597 -8.59817 -8.53060 -8.45751 -6.20295 -4.27608 0.67550 1.08947 2.90747 3.22763 3.28740 3.32812 3.47724 3.73566 4.19429 4.31158 4.56087 4.64514 4.90408 4.95496 5.02652 5.12620 5.32396 5.47189 5.50586 5.64456 5.79946 5.86068 5.94673 5.99516 6.09346 6.13718 6.17054 6.33575 6.46412 6.67461 6.73301 6.86418 7.02437 7.17711 7.54516 7.57264 7.80767 8.08779 8.55169 8.83898 9.36787 10.87048 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.005323 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.820524 B = 5259.053056 C = 5862.810771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.115 4.115 3 C -0.067 4.067 4 C -0.167 4.167 5 C 0.151 3.849 6 F -0.116 7.116 7 C -0.147 4.147 8 C 0.493 3.507 9 O -0.498 6.498 10 O -0.345 6.345 11 C 0.248 3.752 12 H 0.053 0.947 13 C -0.517 4.517 14 H 0.071 0.929 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.910 3.090 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.116 4.116 22 C -0.194 4.194 23 C -0.210 4.210 24 C -0.035 4.035 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.266 0.734 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 14.916 1.912 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.115 4.115 3 C -0.085 4.085 4 C -0.186 4.186 5 C 0.132 3.868 6 F -0.094 7.094 7 C -0.149 4.149 8 C 0.337 3.663 9 O -0.389 6.389 10 O -0.261 6.261 11 C 0.196 3.804 12 H 0.071 0.929 13 C -0.555 4.555 14 H 0.089 0.911 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.737 3.263 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.135 4.135 22 C -0.231 4.231 23 C -0.247 4.247 24 C -0.053 4.053 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.076 0.924 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.111 0.889 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.949 14.696 1.930 16.820 hybrid contribution 0.141 -0.814 -0.284 0.874 sum -7.808 13.882 1.646 16.012 Atomic orbital electron populations 1.20776 0.90185 1.03170 1.02697 1.19951 0.96914 0.92568 1.02052 1.21068 0.92962 0.98130 0.96334 1.21054 0.94927 0.96762 1.05878 1.17753 0.77523 0.93023 0.98543 1.91595 1.27846 1.97193 1.92766 1.19550 0.94483 0.90882 1.09989 1.20710 0.86162 0.85354 0.74086 1.90819 1.14531 1.88304 1.45213 1.86533 1.42742 1.15042 1.81794 1.20205 0.91881 0.76395 0.91913 0.92891 1.20966 1.04439 0.94002 1.36131 0.91070 1.24906 0.95097 0.98339 0.95522 1.69995 1.15051 1.22678 1.44445 0.86244 0.79810 0.81050 0.79195 1.19443 1.20745 1.20714 1.23022 0.99591 0.99078 0.91762 1.22795 0.94481 1.04401 1.01417 1.23155 0.93717 1.02980 1.04881 1.21396 0.91778 0.99226 0.92908 0.90877 0.90949 0.91412 0.84708 0.84094 0.92413 0.85183 0.89869 0.90379 0.90452 0.88890 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.00 36.00 0.36 -0.51 16 2 C -0.11 -1.24 5.87 -104.68 -0.61 -1.86 16 3 C -0.07 -0.65 9.69 -39.51 -0.38 -1.03 16 4 C -0.17 -1.92 10.01 -39.57 -0.40 -2.32 16 5 C 0.15 2.39 7.29 -38.94 -0.28 2.11 16 6 F -0.12 -2.09 15.55 2.25 0.04 -2.06 16 7 C -0.15 -2.55 5.88 -104.93 -0.62 -3.17 16 8 C 0.49 10.82 6.84 34.53 0.24 11.06 16 9 O -0.50 -12.27 12.44 -19.25 -0.24 -12.51 16 10 O -0.34 -8.11 7.63 -40.57 -0.31 -8.41 16 11 C 0.25 6.60 2.41 -27.88 -0.07 6.53 16 12 H 0.05 1.58 7.16 -51.93 -0.37 1.21 16 13 C -0.52 -14.26 8.90 -34.44 -0.31 -14.56 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.06 1.74 5.20 -17.82 -0.09 1.65 16 16 N -0.88 -24.90 11.59 55.43 0.64 -24.26 16 17 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.12 -2.89 5.27 -90.62 -0.48 -3.37 16 22 C -0.19 -4.14 9.80 -26.69 -0.26 -4.41 16 23 C -0.21 -4.74 9.85 -26.70 -0.26 -5.00 16 24 C -0.03 -0.49 9.26 -39.18 -0.36 -0.86 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.41 8.08 -51.92 -0.42 -0.01 16 28 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 29 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.13 3.52 6.46 -51.93 -0.34 3.18 16 32 H 0.08 1.74 6.91 -51.93 -0.36 1.38 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 35 H 0.09 2.20 5.36 -51.93 -0.28 1.92 16 36 H 0.15 2.09 7.61 -52.49 -0.40 1.69 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -30.78 310.68 -7.98 -38.76 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.24 Total: 3.76 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -3.53 Total: -15.73 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.64 Total: -24.26 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.55 Total: -20.92 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.78 -7.98 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.651 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds