Wall clock time and date at job start Tue Mar 31 2020 00:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38469 * 119.88722 * 2 1 4 4 C 1.38206 * 120.35051 * 179.97438 * 3 2 1 5 5 C 1.38312 * 120.12252 * 0.02562 * 4 3 2 6 6 F 1.35097 * 120.11525 * 179.97438 * 5 4 3 7 7 C 1.39883 * 119.77376 * 359.97438 * 5 4 3 8 8 C 1.47563 * 120.17227 * 179.97438 * 7 5 4 9 9 O 1.21485 * 120.00055 * 0.02562 * 8 7 5 10 10 O 1.34729 * 119.99713 * 180.02562 * 8 7 5 11 11 C 1.45206 * 116.99812 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47078 * 330.00195 * 11 10 8 13 13 C 1.50704 * 109.47006 * 209.99993 * 11 10 8 14 14 H 1.07998 * 119.99806 * 0.02562 * 13 11 10 15 15 C 1.37876 * 119.99865 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99732 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 119.99950 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47327 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47422 * 119.99942 * 17 15 13 20 20 H 1.48500 * 109.47345 * 239.99890 * 17 15 13 21 21 C 1.53000 * 109.47102 * 89.99952 * 11 10 8 22 22 C 1.53002 * 117.49702 * 8.74747 * 21 11 10 23 23 C 1.53000 * 117.49832 * 300.09133 * 21 11 10 24 24 C 1.37839 * 119.88672 * 180.25518 * 2 1 3 25 25 H 1.09001 * 109.47541 * 90.00119 * 1 2 3 26 26 H 1.09000 * 109.47256 * 210.00315 * 1 2 3 27 27 H 1.09007 * 109.47456 * 330.00163 * 1 2 3 28 28 H 1.08005 * 119.82677 * 359.95337 * 3 2 1 29 29 H 1.07999 * 119.93808 * 180.02562 * 4 3 2 30 30 H 0.97002 * 119.99723 * 180.02562 * 16 15 13 31 31 H 1.08999 * 115.54857 * 154.41158 * 21 11 10 32 32 H 1.08997 * 117.49959 * 0.02562 * 22 21 11 33 33 H 1.08998 * 117.49994 * 145.02187 * 22 21 11 34 34 H 1.09004 * 117.49736 * 214.97935 * 23 21 11 35 35 H 1.08999 * 117.50060 * 359.97195 * 23 21 11 36 36 H 1.08000 * 120.06425 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2005 0.0000 4 6 3.5790 1.2117 0.0005 5 6 4.2828 0.0210 0.0005 6 9 5.6337 0.0321 0.0005 7 6 3.5910 -1.1948 0.0005 8 6 4.3329 -2.4703 0.0000 9 8 5.5478 -2.4663 0.0000 10 8 3.6631 -3.6392 -0.0005 11 6 4.4579 -4.8544 -0.0005 12 1 5.4018 -4.6712 -0.5139 13 6 3.7033 -5.9482 -0.7115 14 1 2.7245 -5.7497 -1.1226 15 6 4.2625 -7.2022 -0.8370 16 7 5.4546 -7.4436 -0.3368 17 14 3.3275 -8.5577 -1.7189 18 1 2.0192 -8.0333 -2.1864 19 1 4.1185 -9.0269 -2.8848 20 1 3.1013 -9.6907 -0.7860 21 6 4.7365 -5.2816 1.4420 22 6 4.0000 -4.5334 2.5550 23 6 5.4966 -4.2992 2.3354 24 6 2.1938 -1.1951 -0.0053 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6523 2.1332 -0.0008 29 1 4.1104 2.1519 0.0009 30 1 5.8482 -8.3258 -0.4255 31 1 4.9244 -6.3451 1.5894 32 1 3.3166 -3.7373 2.2596 33 1 3.7039 -5.1046 3.4349 34 1 6.1845 -4.7164 3.0708 35 1 5.7986 -3.3488 1.8953 36 1 1.6530 -2.1299 -0.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263659930.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:15 Heat of formation + Delta-G solvation = -101.693915 kcal Electronic energy + Delta-G solvation = -21618.530731 eV Core-core repulsion = 18175.323644 eV Total energy + Delta-G solvation = -3443.207088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.01145 -41.62543 -39.98518 -38.25636 -36.56926 -34.90794 -33.49285 -32.63955 -29.93272 -27.53676 -26.04792 -25.00040 -23.42640 -23.20402 -21.78289 -20.87305 -19.17448 -18.64686 -18.45341 -17.74573 -17.37864 -17.17830 -16.71162 -16.38195 -15.68022 -15.40576 -15.15812 -14.74163 -14.45796 -14.41412 -14.33049 -13.69715 -13.34670 -13.08313 -12.93096 -12.84691 -12.81385 -12.66655 -12.39345 -12.31886 -12.24175 -11.96299 -11.47894 -11.40385 -11.09508 -10.52365 -10.48597 -10.25633 -9.60656 -8.28869 -6.46034 -0.48762 0.09811 1.40976 1.42052 1.49516 1.55517 1.83468 2.39209 2.54089 2.98407 3.09854 3.10262 3.53780 3.79059 3.81656 4.01342 4.12122 4.19754 4.22022 4.25000 4.54259 4.69677 4.77767 4.86023 4.86948 4.92336 4.94447 5.01969 5.10952 5.18370 5.23769 5.32139 5.44163 5.47229 5.52606 5.78398 5.81667 6.03196 6.57632 6.86171 7.24069 8.79250 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.005323 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.820524 B = 5259.053056 C = 5862.810771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.042 4.042 4 C -0.153 4.153 5 C 0.122 3.878 6 F -0.140 7.140 7 C -0.181 4.181 8 C 0.487 3.513 9 O -0.539 6.539 10 O -0.346 6.346 11 C 0.254 3.746 12 H 0.002 0.998 13 C -0.543 4.543 14 H 0.070 0.930 15 C 0.018 3.982 16 N -0.915 5.915 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.278 1.278 20 H -0.271 1.271 21 C -0.144 4.144 22 C -0.163 4.163 23 C -0.205 4.205 24 C -0.045 4.045 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.188 0.812 29 H 0.174 0.826 30 H 0.270 0.730 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 16.992 2.320 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.060 4.060 4 C -0.171 4.171 5 C 0.102 3.898 6 F -0.118 7.118 7 C -0.183 4.183 8 C 0.334 3.666 9 O -0.431 6.431 10 O -0.262 6.262 11 C 0.201 3.799 12 H 0.020 0.980 13 C -0.580 4.580 14 H 0.088 0.912 15 C -0.182 4.182 16 N -0.552 5.552 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.196 1.196 21 C -0.162 4.162 22 C -0.200 4.200 23 C -0.242 4.242 24 C -0.063 4.063 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.115 0.885 28 H 0.205 0.795 29 H 0.191 0.809 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.118 16.794 2.345 20.277 hybrid contribution 1.074 -1.305 -0.422 1.742 sum -10.044 15.489 1.923 18.560 Atomic orbital electron populations 1.20889 0.87407 1.04598 1.03893 1.20367 0.98733 0.91561 0.99570 1.21688 0.92151 0.99619 0.92497 1.21477 0.95835 0.96052 1.03724 1.18230 0.76828 0.94116 1.00622 1.91528 1.29706 1.97332 1.93254 1.19440 0.95721 0.88817 1.14283 1.21631 0.86227 0.86145 0.72632 1.90779 1.16326 1.88728 1.47276 1.86512 1.42302 1.15128 1.82301 1.19811 0.89977 0.77501 0.92598 0.98009 1.21242 1.04626 0.94959 1.37187 0.91169 1.25842 0.95881 1.00571 0.95906 1.70130 1.16525 1.23407 1.45152 0.85141 0.78612 0.77717 0.77976 1.18470 1.20319 1.19625 1.22731 1.03279 0.98287 0.91949 1.22866 0.93539 1.03238 1.00324 1.23125 0.95255 1.01513 1.04318 1.21448 0.90342 1.00762 0.93727 0.89629 0.91157 0.88466 0.79502 0.80858 0.92101 0.87410 0.89471 0.87429 0.88582 0.90444 0.83968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.00 71.24 0.71 -0.52 16 2 C -0.10 -1.85 5.87 -19.90 -0.12 -1.97 16 3 C -0.04 -0.60 9.69 22.32 0.22 -0.38 16 4 C -0.15 -3.02 10.01 22.28 0.22 -2.79 16 5 C 0.12 3.86 7.29 22.69 0.17 4.02 16 6 F -0.14 -5.30 15.55 44.97 0.70 -4.60 16 7 C -0.18 -6.48 5.88 -20.06 -0.12 -6.60 16 8 C 0.49 22.89 6.84 70.28 0.48 23.37 16 9 O -0.54 -28.80 12.44 19.88 0.25 -28.55 16 10 O -0.35 -17.31 7.63 -56.39 -0.43 -17.74 16 11 C 0.25 14.41 2.41 29.85 0.07 14.48 16 12 H 0.00 0.14 7.16 -2.39 -0.02 0.13 16 13 C -0.54 -31.23 8.90 25.60 0.23 -31.01 16 14 H 0.07 3.93 7.81 -2.91 -0.02 3.90 16 15 C 0.02 1.00 5.20 84.65 0.44 1.44 16 16 N -0.91 -53.54 11.59 21.45 0.25 -53.29 16 17 Si 0.98 43.20 29.54 68.60 2.03 45.22 16 18 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 19 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 21 C -0.14 -7.51 5.27 -10.79 -0.06 -7.57 16 22 C -0.16 -6.98 9.80 30.62 0.30 -6.68 16 23 C -0.21 -9.55 9.85 30.62 0.30 -9.24 16 24 C -0.04 -1.23 9.26 22.53 0.21 -1.02 16 25 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 27 H 0.10 0.57 8.08 -2.38 -0.02 0.55 16 28 H 0.19 0.87 8.06 -2.91 -0.02 0.84 16 29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.11 6.11 6.46 -2.39 -0.02 6.09 16 32 H 0.09 3.65 6.91 -2.39 -0.02 3.64 16 33 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 34 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 35 H 0.08 3.87 5.36 -2.39 -0.01 3.86 16 36 H 0.14 4.04 7.61 -2.91 -0.02 4.02 16 Total: -1.00 -73.76 310.68 6.95 -66.81 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.10 Total: 16.60 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 3.06 Total: -24.45 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.25 Total: -53.29 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.18 Total: -46.30 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.70 Total: -4.60 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -73.76 6.95 -66.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263659930.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.880 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds