Wall clock time and date at job start Mon Mar 30 2020 23:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00172 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47317 * 179.97438 * 18 17 15 20 20 N 1.34774 * 120.00161 * 180.02562 * 19 18 17 21 21 O 1.21282 * 119.99564 * 0.02562 * 19 18 17 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 30 30 H 1.08998 * 109.47323 * 300.00278 * 18 17 15 31 31 H 1.09005 * 109.46890 * 60.00059 * 18 17 15 32 32 H 0.96995 * 119.99620 * 0.02562 * 20 19 18 33 33 H 0.97001 * 119.99822 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 35 35 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 6 5.6266 -9.3147 2.4046 19 6 6.4427 -10.5760 2.2852 20 7 6.8025 -11.2533 3.3934 21 8 6.7758 -10.9815 1.1917 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 5.7124 -9.2282 0.2848 30 1 6.1754 -8.5809 2.9947 31 1 4.6795 -9.5403 2.8948 32 1 6.5358 -10.9292 4.2678 33 1 7.3281 -12.0649 3.3165 34 1 5.2812 -4.5470 -0.1945 35 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318373210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:39 Heat of formation + Delta-G solvation = -80.076395 kcal Electronic energy + Delta-G solvation = -20146.493915 eV Core-core repulsion = 16724.144195 eV Total energy + Delta-G solvation = -3422.349720 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34534 -39.38720 -38.63721 -36.46552 -34.45929 -34.22395 -32.43380 -31.40830 -30.09173 -28.43684 -26.17926 -24.95505 -21.91366 -21.50720 -20.91492 -20.10991 -18.26681 -17.92173 -17.41812 -16.90390 -16.20174 -16.14059 -15.83800 -15.03862 -14.54833 -14.33689 -14.17610 -14.03860 -13.53323 -13.43522 -13.23087 -13.00661 -12.63897 -12.38041 -11.78236 -11.45446 -11.21795 -10.81210 -10.70326 -10.59859 -10.56183 -10.39533 -10.25518 -9.78789 -9.28116 -9.25471 -8.77239 -8.08817 -7.10742 -6.39995 -3.98507 2.07594 2.28476 2.31510 2.75049 2.77249 3.16506 3.17329 3.20209 3.38895 4.01125 4.33922 4.60471 4.93676 4.97224 5.10549 5.16970 5.31475 5.37791 5.42091 5.73394 5.79551 5.91303 6.15994 6.24101 6.27711 6.48043 6.75228 6.76509 6.97666 7.10858 7.29618 7.42964 7.44270 7.50907 7.68137 7.90124 8.05371 8.28355 9.05635 9.76845 10.78158 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041240 B = 0.002848 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.791885 B = 9828.198256 C =10047.856403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.178 6.178 10 C 0.157 3.843 11 C -0.192 4.192 12 C -0.059 4.059 13 C -0.170 4.170 14 C -0.078 4.078 15 C 0.512 3.488 16 O -0.522 6.522 17 N -0.731 5.731 18 C 0.098 3.902 19 C 0.515 3.485 20 N -0.851 5.851 21 O -0.541 6.541 22 C -0.056 4.056 23 C -0.233 4.233 24 H 0.270 0.730 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.410 0.590 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.406 0.594 33 H 0.405 0.595 34 H 0.104 0.896 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.439 -18.826 4.101 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.082 6.082 10 C 0.103 3.897 11 C -0.211 4.211 12 C -0.078 4.078 13 C -0.172 4.172 14 C -0.118 4.118 15 C 0.299 3.701 16 O -0.396 6.396 17 N -0.389 5.389 18 C -0.029 4.029 19 C 0.299 3.701 20 N -0.415 5.415 21 O -0.417 6.417 22 C -0.075 4.075 23 C -0.252 4.252 24 H 0.080 0.920 25 H 0.134 0.866 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.247 0.753 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.236 0.764 34 H 0.122 0.878 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.795 -18.273 4.059 22.125 hybrid contribution 0.839 0.330 0.246 0.934 sum 12.633 -17.943 4.305 22.363 Atomic orbital electron populations 1.70030 1.05944 1.27699 1.46237 1.25282 0.95835 0.98798 0.96632 0.85787 0.78684 0.79824 0.79156 1.19523 1.20316 1.19536 1.21280 0.91774 0.80880 1.52803 0.89142 1.83975 1.34331 1.11445 1.78427 1.19392 0.90296 0.88023 0.92001 1.20151 0.99473 0.90332 1.11148 1.20406 0.92758 0.96622 0.97968 1.18634 0.93218 0.92527 1.12796 1.20384 1.01468 0.96844 0.93091 1.21119 0.76987 0.79234 0.92723 1.90749 1.49553 1.58658 1.40597 1.45850 1.57260 1.27671 1.08089 1.20998 1.00601 0.93378 0.87957 1.20654 0.79512 0.85438 0.84475 1.43747 1.58320 1.30181 1.09232 1.90753 1.55412 1.68901 1.26660 1.20512 0.98064 0.91817 0.97058 1.21101 0.93796 0.98802 1.11487 0.92026 0.86553 0.87349 0.88741 0.88779 0.75290 0.88353 0.88351 0.76561 0.76372 0.87799 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.77 13.67 55.48 0.76 -25.01 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.39 -11.19 9.49 30.89 0.29 -10.89 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.18 -5.24 9.76 0.05 0.00 -5.24 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.19 -4.24 9.99 -39.39 -0.39 -4.64 16 12 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 13 C -0.17 -3.02 4.38 -104.58 -0.46 -3.47 16 14 C -0.08 -1.00 5.83 -29.04 -0.17 -1.17 16 15 C 0.51 7.08 7.82 -10.98 -0.09 7.00 16 16 O -0.52 -9.49 16.03 5.55 0.09 -9.40 16 17 N -0.73 -7.69 5.53 -61.47 -0.34 -8.03 16 18 C 0.10 0.83 6.15 -5.19 -0.03 0.79 16 19 C 0.51 4.06 8.17 -10.98 -0.09 3.97 16 20 N -0.85 -3.31 8.87 31.22 0.28 -3.03 16 21 O -0.54 -6.28 16.50 5.56 0.09 -6.19 16 22 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 23 C -0.23 -5.28 9.17 -39.39 -0.36 -5.64 16 24 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 26 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 28 H 0.09 1.00 8.08 -51.93 -0.42 0.58 16 29 H 0.41 3.88 7.44 -40.82 -0.30 3.58 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.41 0.48 8.83 -40.82 -0.36 0.12 16 33 H 0.41 1.22 8.93 -40.82 -0.36 0.86 16 34 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 35 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -36.85 314.74 -5.51 -42.36 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.69 Total: 6.30 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.42 Total: -12.35 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.70 Total: -36.08 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: 0.18 Total: -20.83 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.85 -5.51 -42.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318373210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.713 kcal (2) G-P(sol) polarization free energy of solvation -36.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds