Wall clock time and date at job start Mon Mar 30 2020 23:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00172 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.47317 * 179.97438 * 18 17 15 20 20 N 1.34774 * 120.00161 * 180.02562 * 19 18 17 21 21 O 1.21282 * 119.99564 * 0.02562 * 19 18 17 22 22 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 23 23 C 1.38101 * 120.07425 * 359.95492 * 22 13 12 24 24 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 26 26 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 27 27 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 28 28 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 29 29 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 30 30 H 1.08998 * 109.47323 * 300.00278 * 18 17 15 31 31 H 1.09005 * 109.46890 * 60.00059 * 18 17 15 32 32 H 0.96995 * 119.99620 * 0.02562 * 20 19 18 33 33 H 0.97001 * 119.99822 * 180.02562 * 20 19 18 34 34 H 1.07999 * 119.96503 * 179.97438 * 22 13 12 35 35 H 1.07992 * 120.03608 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 6 5.6266 -9.3147 2.4046 19 6 6.4427 -10.5760 2.2852 20 7 6.8025 -11.2533 3.3934 21 8 6.7758 -10.9815 1.1917 22 6 4.2024 -4.5970 -0.2043 23 6 3.4573 -3.4394 -0.0951 24 1 -0.4850 0.8400 0.0004 25 1 0.3579 -4.7892 -0.2301 26 1 1.6954 -6.8451 -0.4339 27 1 3.8358 -7.8149 -1.0361 28 1 5.3320 -6.8560 -0.9360 29 1 5.7124 -9.2282 0.2848 30 1 6.1754 -8.5809 2.9947 31 1 4.6795 -9.5403 2.8948 32 1 6.5358 -10.9292 4.2678 33 1 7.3281 -12.0649 3.3165 34 1 5.2812 -4.5470 -0.1945 35 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318373210.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:39 Heat of formation + Delta-G solvation = -110.886460 kcal Electronic energy + Delta-G solvation = -20147.829940 eV Core-core repulsion = 16724.144195 eV Total energy + Delta-G solvation = -3423.685745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25835 -40.69745 -39.97426 -38.17667 -35.41586 -34.75270 -34.38075 -32.88010 -31.75456 -29.47429 -27.74220 -26.65618 -23.61162 -22.70267 -21.75364 -21.31744 -19.82640 -19.01276 -18.70920 -18.16841 -16.98652 -16.95799 -16.82936 -16.41013 -16.27004 -15.71832 -15.61168 -15.48736 -15.00671 -14.85823 -14.39088 -14.16777 -14.09935 -13.72447 -13.53150 -12.94212 -12.73683 -12.43798 -12.27850 -12.24746 -12.12075 -11.25724 -11.16109 -10.98590 -10.74214 -10.74025 -10.15976 -9.73859 -8.88317 -8.45751 -6.13937 0.64022 0.68988 1.35016 1.46055 1.47359 1.51712 1.70898 2.01124 2.19179 2.66981 2.87853 3.20216 3.54031 3.85720 3.89758 4.07783 4.18343 4.23728 4.33710 4.44772 4.51745 4.62503 4.74397 4.82891 5.11078 5.16421 5.32266 5.34776 5.58801 5.73754 5.80464 5.82356 6.04472 6.24957 6.33824 6.55346 6.98635 7.21746 7.29346 7.80346 8.77551 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.041240 B = 0.002848 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.791885 B = 9828.198256 C =10047.856403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.020 2.980 4 H -0.256 1.256 5 H -0.271 1.271 6 H -0.259 1.259 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.234 6.234 10 C 0.112 3.888 11 C -0.206 4.206 12 C -0.057 4.057 13 C -0.146 4.146 14 C -0.079 4.079 15 C 0.516 3.484 16 O -0.573 6.573 17 N -0.717 5.717 18 C 0.094 3.906 19 C 0.519 3.481 20 N -0.829 5.829 21 O -0.581 6.581 22 C -0.060 4.060 23 C -0.244 4.244 24 H 0.273 0.727 25 H 0.112 0.888 26 H 0.147 0.853 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.418 0.582 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.421 0.579 33 H 0.413 0.587 34 H 0.139 0.861 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.222 -21.143 4.065 26.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.118 0.882 9 O -0.140 6.140 10 C 0.062 3.938 11 C -0.226 4.226 12 C -0.075 4.075 13 C -0.147 4.147 14 C -0.118 4.118 15 C 0.304 3.696 16 O -0.452 6.452 17 N -0.373 5.373 18 C -0.033 4.033 19 C 0.303 3.697 20 N -0.393 5.393 21 O -0.461 6.461 22 C -0.078 4.078 23 C -0.263 4.263 24 H 0.082 0.918 25 H 0.130 0.870 26 H 0.165 0.835 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.257 0.743 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.252 0.748 33 H 0.245 0.755 34 H 0.156 0.844 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.636 -20.695 4.049 25.668 hybrid contribution 0.121 0.623 0.291 0.698 sum 14.757 -20.072 4.340 25.288 Atomic orbital electron populations 1.70182 1.08037 1.28848 1.48957 1.26618 0.96886 1.02769 0.95873 0.84638 0.77383 0.74188 0.79923 1.18023 1.19515 1.18289 1.21790 0.92504 0.81520 1.53278 0.88228 1.83936 1.35945 1.12593 1.81571 1.19950 0.91669 0.87972 0.94241 1.20437 0.99891 0.90710 1.11522 1.20879 0.93479 0.96833 0.96303 1.19233 0.93355 0.94230 1.07857 1.20510 1.02737 0.95011 0.93523 1.21096 0.76705 0.79575 0.92204 1.90756 1.51992 1.60341 1.42091 1.45696 1.55703 1.26502 1.09437 1.21153 1.01340 0.93849 0.86952 1.20534 0.79233 0.85282 0.84638 1.43587 1.56978 1.29714 1.09065 1.90743 1.57241 1.69920 1.28227 1.20935 0.99738 0.91158 0.95928 1.21227 0.93103 1.00052 1.11931 0.91839 0.86981 0.83524 0.85239 0.85473 0.74345 0.87588 0.87529 0.74768 0.75451 0.84354 0.86444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.04 13.67 21.62 0.30 -57.74 16 2 C -0.02 -1.42 5.49 84.84 0.47 -0.95 16 3 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.41 -25.04 9.49 67.92 0.64 -24.40 16 8 H 0.10 5.53 5.20 -2.91 -0.02 5.51 16 9 O -0.23 -14.68 9.76 -22.72 -0.22 -14.90 16 10 C 0.11 5.88 6.65 22.58 0.15 6.03 16 11 C -0.21 -9.33 9.99 22.39 0.22 -9.11 16 12 C -0.06 -2.02 9.69 22.25 0.22 -1.80 16 13 C -0.15 -4.69 4.38 -19.84 -0.09 -4.78 16 14 C -0.08 -1.63 5.83 29.10 0.17 -1.46 16 15 C 0.52 12.37 7.82 87.66 0.69 13.05 16 16 O -0.57 -19.48 16.03 -3.05 -0.05 -19.53 16 17 N -0.72 -12.55 5.53 -466.78 -2.58 -15.13 16 18 C 0.09 1.31 6.15 85.64 0.53 1.83 16 19 C 0.52 6.75 8.17 87.66 0.72 7.47 16 20 N -0.83 -4.01 8.87 -173.53 -1.54 -5.55 16 21 O -0.58 -12.12 16.50 -3.04 -0.05 -12.17 16 22 C -0.06 -2.17 9.69 22.25 0.22 -1.95 16 23 C -0.24 -11.25 9.17 22.39 0.21 -11.04 16 24 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 25 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 26 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 27 H 0.13 1.91 8.08 -2.39 -0.02 1.89 16 28 H 0.13 1.93 8.08 -2.39 -0.02 1.91 16 29 H 0.42 6.31 7.44 -92.70 -0.69 5.62 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.42 -0.34 8.83 -92.71 -0.82 -1.15 16 33 H 0.41 1.32 8.93 -92.71 -0.83 0.49 16 34 H 0.14 4.05 8.06 -2.91 -0.02 4.02 16 35 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 Total: -1.00 -86.49 314.74 0.85 -85.64 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -1.17 Total: 20.51 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 4.13 Total: -27.11 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -3.82 Total: -78.42 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: -0.32 Total: -46.60 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -86.49 0.85 -85.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318373210.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.249 kcal (2) G-P(sol) polarization free energy of solvation -86.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds