Wall clock time and date at job start Mon Mar 30 2020 23:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48499 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47123 * 300.00114 * 3 2 1 6 6 H 1.48496 * 109.47308 * 60.00069 * 3 2 1 7 7 C 1.38637 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99774 * 179.97438 * 7 2 1 9 9 O 1.34806 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.35656 * 117.00164 * 174.94530 * 9 7 2 11 11 C 1.39078 * 119.90927 * 185.27355 * 10 9 7 12 12 C 1.37713 * 120.08454 * 179.76388 * 11 10 9 13 13 C 1.39814 * 119.91220 * 0.53273 * 12 11 10 14 14 C 1.47358 * 120.09110 * 179.70166 * 13 12 11 15 15 N 1.29831 * 119.99732 * 0.02562 * 14 13 12 16 16 N 1.40099 * 119.99894 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00172 * 179.97438 * 16 15 14 18 18 O 1.21318 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00360 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47223 * 180.02562 * 19 17 16 21 21 O 1.42905 * 109.47120 * 179.97438 * 20 19 17 22 22 C 1.39819 * 119.82396 * 359.72340 * 13 12 11 23 23 C 1.37708 * 119.91100 * 359.97438 * 22 13 12 24 24 H 0.97001 * 119.99765 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.96098 * 0.02562 * 11 10 9 26 26 H 1.07995 * 120.04889 * 180.25570 * 12 11 10 27 27 H 1.08001 * 120.00210 * 180.02562 * 14 13 12 28 28 H 0.97002 * 119.99891 * 0.02562 * 16 15 14 29 29 H 1.09005 * 109.47365 * 300.00530 * 19 17 16 30 30 H 1.09001 * 109.47152 * 59.99975 * 19 17 16 31 31 H 1.08999 * 109.47055 * 300.00135 * 20 19 17 32 32 H 1.09005 * 109.46771 * 60.00528 * 20 19 17 33 33 H 0.96691 * 113.99886 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.04038 * 179.97438 * 22 13 12 35 35 H 1.07998 * 119.95890 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0697 -3.5034 -0.1076 11 6 1.4319 -4.7338 -0.2244 12 6 2.1742 -5.8881 -0.3381 13 6 3.5708 -5.8231 -0.3249 14 6 4.3689 -7.0565 -0.4397 15 7 3.7754 -8.2055 -0.5539 16 7 4.5342 -9.3781 -0.6626 17 6 3.9181 -10.5710 -0.7806 18 8 2.7064 -10.6292 -0.7933 19 6 4.7343 -11.8324 -0.8981 20 6 3.7979 -13.0363 -1.0194 21 8 4.5719 -14.2323 -1.1314 22 6 4.2081 -4.5847 -0.2019 23 6 3.4587 -3.4344 -0.0949 24 1 -0.4850 0.8401 -0.0004 25 1 0.3530 -4.7837 -0.2302 26 1 1.6783 -6.8428 -0.4330 27 1 5.4476 -7.0046 -0.4289 28 1 5.5030 -9.3316 -0.6521 29 1 5.3675 -11.7743 -1.7834 30 1 5.3585 -11.9450 -0.0117 31 1 3.1644 -13.0945 -0.1344 32 1 3.1740 -12.9233 -1.9061 33 1 4.0424 -15.0374 -1.2117 34 1 5.2866 -4.5305 -0.1908 35 1 3.9501 -2.4774 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318923384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:02 Heat of formation + Delta-G solvation = -49.743407 kcal Electronic energy + Delta-G solvation = -19562.982034 eV Core-core repulsion = 16141.947651 eV Total energy + Delta-G solvation = -3421.034383 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80011 -39.12042 -37.34850 -36.95275 -35.81779 -32.79674 -32.31189 -31.21503 -30.34434 -28.48980 -25.66266 -24.31996 -22.63704 -21.98434 -20.60913 -20.16974 -18.32381 -18.14031 -17.33690 -16.70565 -16.51014 -16.29396 -15.05538 -14.63907 -14.61483 -14.36399 -14.12178 -14.00365 -13.78079 -13.53712 -12.85085 -12.80292 -12.48723 -12.17038 -11.80934 -11.69117 -11.35534 -11.23950 -10.97130 -10.79479 -10.51661 -10.36770 -10.20276 -9.93076 -9.45433 -9.25964 -8.77600 -8.31016 -7.14160 -6.60146 -4.16493 1.32796 2.19109 2.40566 2.42116 2.98346 3.06075 3.12182 3.13643 3.85216 3.87229 4.36115 4.54042 4.64622 4.84576 4.87950 4.97603 5.07951 5.15226 5.17939 5.43341 5.43424 5.55014 5.73459 5.92159 6.12575 6.32341 6.60149 6.78516 6.94070 7.01294 7.15784 7.18087 7.20848 7.30567 7.58178 7.68503 7.85009 8.41950 8.84656 9.52430 10.56777 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.066268 B = 0.002405 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.426491 B =11638.021461 C =12032.383733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.040 3.960 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.097 0.903 9 O -0.165 6.165 10 C 0.170 3.830 11 C -0.201 4.201 12 C -0.025 4.025 13 C -0.175 4.175 14 C 0.152 3.848 15 N -0.270 5.270 16 N -0.587 5.587 17 C 0.532 3.468 18 O -0.511 6.511 19 C -0.135 4.135 20 C 0.091 3.909 21 O -0.578 6.578 22 C -0.034 4.034 23 C -0.242 4.242 24 H 0.273 0.727 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.380 0.620 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.385 0.615 34 H 0.113 0.887 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.854 -17.150 -1.377 20.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.166 4.166 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.066 6.066 10 C 0.113 3.887 11 C -0.221 4.221 12 C -0.045 4.045 13 C -0.179 4.179 14 C -0.055 4.055 15 N -0.075 5.075 16 N -0.328 5.328 17 C 0.318 3.682 18 O -0.384 6.384 19 C -0.177 4.177 20 C 0.012 3.988 21 O -0.385 6.385 22 C -0.054 4.054 23 C -0.261 4.261 24 H 0.083 0.917 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.124 0.876 28 H 0.217 0.783 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.233 0.767 34 H 0.131 0.869 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.218 -17.169 -1.384 20.028 hybrid contribution 1.505 0.813 0.010 1.711 sum 11.723 -16.356 -1.374 20.170 Atomic orbital electron populations 1.70053 1.06082 1.28018 1.44513 1.25382 0.95906 0.99120 0.96171 0.85588 0.79156 0.79957 0.78398 1.18926 1.19991 1.19998 1.21480 0.92066 0.80613 1.52679 0.88544 1.83947 1.34874 1.11746 1.76034 1.19598 0.90342 0.87897 0.90863 1.20202 0.99947 0.90063 1.11857 1.20908 0.92513 0.97341 0.93724 1.17788 0.92728 0.89766 1.17633 1.24454 0.97042 0.90892 0.93144 1.75151 1.22318 0.92411 1.17642 1.46916 1.07845 1.04677 1.73365 1.20208 0.88650 0.83012 0.76291 1.90742 1.14094 1.86382 1.47159 1.21436 0.99429 0.91178 1.05652 1.21781 0.92056 0.83386 1.01549 1.86367 1.38094 1.16883 1.97123 1.20779 0.98377 0.91020 0.95245 1.21042 0.93633 0.98933 1.12535 0.91736 0.86073 0.85682 0.87567 0.78313 0.87919 0.87921 0.92427 0.92432 0.76711 0.86881 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.14 13.67 55.48 0.76 -23.39 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.44 9.48 30.88 0.29 -10.15 16 8 H 0.10 2.34 5.19 -52.49 -0.27 2.06 16 9 O -0.17 -4.53 9.75 0.41 0.00 -4.52 16 10 C 0.17 3.93 6.65 -38.96 -0.26 3.67 16 11 C -0.20 -4.22 9.97 -39.46 -0.39 -4.61 16 12 C -0.02 -0.46 9.57 -39.18 -0.37 -0.84 16 13 C -0.17 -2.96 5.87 -105.01 -0.62 -3.58 16 14 C 0.15 2.13 10.75 -14.69 -0.16 1.98 16 15 N -0.27 -4.20 10.15 32.14 0.33 -3.88 16 16 N -0.59 -7.05 6.26 31.22 0.20 -6.86 16 17 C 0.53 6.67 7.95 -10.99 -0.09 6.58 16 18 O -0.51 -8.73 16.32 5.52 0.09 -8.64 16 19 C -0.14 -1.10 6.07 -27.89 -0.17 -1.27 16 20 C 0.09 0.77 6.34 37.16 0.24 1.01 16 21 O -0.58 -4.45 13.66 -35.23 -0.48 -4.93 16 22 C -0.03 -0.56 9.78 -39.18 -0.38 -0.94 16 23 C -0.24 -4.88 9.15 -39.46 -0.36 -5.24 16 24 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 26 H 0.13 2.29 7.55 -52.49 -0.40 1.89 16 27 H 0.11 1.08 8.02 -52.49 -0.42 0.66 16 28 H 0.38 3.00 8.65 -182.60 -1.58 1.42 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.39 1.27 9.12 45.56 0.42 1.69 16 34 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.13 2.61 5.62 -52.49 -0.29 2.31 16 LS Contribution 318.80 15.07 4.80 4.80 Total: -1.00 -34.10 318.80 -5.91 -40.01 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.22 Total: 5.31 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.37 Total: -12.43 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 1.28 Total: -34.12 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.39 Total: -18.10 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.10 -5.91 -40.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318923384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.732 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds