Wall clock time and date at job start Mon Mar 30 2020 23:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48499 * 109.47072 * 180.02562 * 3 2 1 5 5 H 1.48510 * 109.47123 * 300.00114 * 3 2 1 6 6 H 1.48496 * 109.47308 * 60.00069 * 3 2 1 7 7 C 1.38637 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99774 * 179.97438 * 7 2 1 9 9 O 1.34806 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.35656 * 117.00164 * 174.94530 * 9 7 2 11 11 C 1.39078 * 119.90927 * 185.27355 * 10 9 7 12 12 C 1.37713 * 120.08454 * 179.76388 * 11 10 9 13 13 C 1.39814 * 119.91220 * 0.53273 * 12 11 10 14 14 C 1.47358 * 120.09110 * 179.70166 * 13 12 11 15 15 N 1.29831 * 119.99732 * 0.02562 * 14 13 12 16 16 N 1.40099 * 119.99894 * 180.02562 * 15 14 13 17 17 C 1.34774 * 120.00172 * 179.97438 * 16 15 14 18 18 O 1.21318 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00360 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.47223 * 180.02562 * 19 17 16 21 21 O 1.42905 * 109.47120 * 179.97438 * 20 19 17 22 22 C 1.39819 * 119.82396 * 359.72340 * 13 12 11 23 23 C 1.37708 * 119.91100 * 359.97438 * 22 13 12 24 24 H 0.97001 * 119.99765 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.96098 * 0.02562 * 11 10 9 26 26 H 1.07995 * 120.04889 * 180.25570 * 12 11 10 27 27 H 1.08001 * 120.00210 * 180.02562 * 14 13 12 28 28 H 0.97002 * 119.99891 * 0.02562 * 16 15 14 29 29 H 1.09005 * 109.47365 * 300.00530 * 19 17 16 30 30 H 1.09001 * 109.47152 * 59.99975 * 19 17 16 31 31 H 1.08999 * 109.47055 * 300.00135 * 20 19 17 32 32 H 1.09005 * 109.46771 * 60.00528 * 20 19 17 33 33 H 0.96691 * 113.99886 * 179.97438 * 21 20 19 34 34 H 1.07996 * 120.04038 * 179.97438 * 22 13 12 35 35 H 1.07998 * 119.95890 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3465 -0.0006 5 1 1.8908 2.3965 -1.2126 6 1 1.8909 2.3965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2005 -0.0010 9 8 1.3349 -2.3681 -0.0005 10 6 2.0697 -3.5034 -0.1076 11 6 1.4319 -4.7338 -0.2244 12 6 2.1742 -5.8881 -0.3381 13 6 3.5708 -5.8231 -0.3249 14 6 4.3689 -7.0565 -0.4397 15 7 3.7754 -8.2055 -0.5539 16 7 4.5342 -9.3781 -0.6626 17 6 3.9181 -10.5710 -0.7806 18 8 2.7064 -10.6292 -0.7933 19 6 4.7343 -11.8324 -0.8981 20 6 3.7979 -13.0363 -1.0194 21 8 4.5719 -14.2323 -1.1314 22 6 4.2081 -4.5847 -0.2019 23 6 3.4587 -3.4344 -0.0949 24 1 -0.4850 0.8401 -0.0004 25 1 0.3530 -4.7837 -0.2302 26 1 1.6783 -6.8428 -0.4330 27 1 5.4476 -7.0046 -0.4289 28 1 5.5030 -9.3316 -0.6521 29 1 5.3675 -11.7743 -1.7834 30 1 5.3585 -11.9450 -0.0117 31 1 3.1644 -13.0945 -0.1344 32 1 3.1740 -12.9233 -1.9061 33 1 4.0424 -15.0374 -1.2117 34 1 5.2866 -4.5305 -0.1908 35 1 3.9501 -2.4774 0.0006 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318923384.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:02 Heat of formation + Delta-G solvation = -77.134984 kcal Electronic energy + Delta-G solvation = -19564.169822 eV Core-core repulsion = 16141.947651 eV Total energy + Delta-G solvation = -3422.222171 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.88658 -40.71211 -38.67819 -37.79091 -37.09125 -34.41141 -33.65456 -32.12346 -31.89420 -29.90077 -27.49788 -25.29661 -23.97164 -23.44231 -21.67765 -21.44827 -19.91260 -19.13212 -18.80234 -17.96953 -17.46301 -17.06460 -16.48598 -16.29809 -15.94458 -15.60204 -15.46719 -15.17414 -14.98217 -14.73107 -14.47910 -14.06470 -13.92512 -13.54647 -13.03708 -12.84749 -12.75239 -12.47027 -12.40686 -12.30001 -12.06406 -11.33824 -11.16673 -10.99095 -10.98293 -10.89300 -10.20857 -9.84588 -8.71761 -8.48877 -6.16115 0.00095 0.61730 1.24037 1.38337 1.46596 1.47394 1.57077 1.89265 2.17836 2.87952 3.20102 3.21047 3.45561 3.64236 3.79019 3.99884 4.04102 4.17095 4.23764 4.34176 4.52735 4.54698 4.65465 4.79677 4.81196 4.85589 5.00322 5.16233 5.27083 5.55599 5.65421 5.65918 6.00728 6.11584 6.14110 6.53362 6.81730 6.95404 7.45365 7.73734 8.73965 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.066268 B = 0.002405 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.426491 B =11638.021461 C =12032.383733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.244 1.244 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.413 4.413 8 H 0.113 0.887 9 O -0.225 6.225 10 C 0.134 3.866 11 C -0.215 4.215 12 C -0.031 4.031 13 C -0.152 4.152 14 C 0.157 3.843 15 N -0.304 5.304 16 N -0.574 5.574 17 C 0.529 3.471 18 O -0.564 6.564 19 C -0.123 4.123 20 C 0.091 3.909 21 O -0.586 6.586 22 C -0.018 4.018 23 C -0.246 4.246 24 H 0.273 0.727 25 H 0.110 0.890 26 H 0.128 0.872 27 H 0.161 0.839 28 H 0.406 0.594 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.403 0.597 34 H 0.169 0.831 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.532 -19.196 -1.603 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.223 4.223 3 Si 0.841 3.159 4 H -0.167 1.167 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.130 0.870 9 O -0.130 6.130 10 C 0.082 3.918 11 C -0.235 4.235 12 C -0.051 4.051 13 C -0.155 4.155 14 C -0.051 4.051 15 N -0.109 5.109 16 N -0.318 5.318 17 C 0.318 3.682 18 O -0.440 6.440 19 C -0.164 4.164 20 C 0.013 3.987 21 O -0.395 6.395 22 C -0.038 4.038 23 C -0.265 4.265 24 H 0.082 0.918 25 H 0.128 0.872 26 H 0.146 0.854 27 H 0.178 0.822 28 H 0.247 0.753 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.254 0.746 34 H 0.186 0.814 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.966 -19.294 -1.614 24.472 hybrid contribution 0.219 0.862 0.039 0.890 sum 15.185 -18.433 -1.575 23.934 Atomic orbital electron populations 1.70207 1.08241 1.28934 1.48264 1.26695 0.96849 1.03056 0.95654 0.84473 0.78573 0.74474 0.78349 1.16711 1.19642 1.19597 1.22002 0.92944 0.81009 1.52917 0.87017 1.83929 1.36488 1.12857 1.79719 1.20087 0.92025 0.87455 0.92279 1.20315 0.99925 0.90615 1.12632 1.21034 0.93906 0.96375 0.93778 1.18214 0.92049 0.91772 1.13499 1.24463 0.99046 0.88948 0.92688 1.75009 1.25323 0.94041 1.16543 1.46758 1.09058 1.03345 1.72626 1.21094 0.88368 0.84115 0.74609 1.90731 1.16656 1.87143 1.49504 1.21421 0.98832 0.88284 1.07872 1.21684 0.92124 0.84150 1.00769 1.86317 1.38654 1.17441 1.97051 1.21227 1.00810 0.89131 0.92622 1.21241 0.92431 1.00618 1.12195 0.91761 0.87233 0.85446 0.82188 0.75342 0.85482 0.85469 0.93351 0.93371 0.74626 0.81376 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.67 21.61 0.30 -55.21 16 2 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 3 Si 1.02 41.10 29.55 68.60 2.03 43.13 16 4 H -0.24 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 7 C -0.41 -23.02 9.48 67.92 0.64 -22.37 16 8 H 0.11 5.53 5.19 -2.91 -0.02 5.51 16 9 O -0.23 -13.20 9.75 -21.46 -0.21 -13.41 16 10 C 0.13 6.47 6.65 22.67 0.15 6.62 16 11 C -0.22 -9.45 9.97 22.35 0.22 -9.23 16 12 C -0.03 -1.14 9.57 22.53 0.22 -0.92 16 13 C -0.15 -4.62 5.87 -20.11 -0.12 -4.74 16 14 C 0.16 3.60 10.75 87.39 0.94 4.54 16 15 N -0.30 -8.39 10.15 -52.22 -0.53 -8.92 16 16 N -0.57 -11.45 6.26 -173.51 -1.09 -12.53 16 17 C 0.53 11.81 7.95 87.66 0.70 12.51 16 18 O -0.56 -18.72 16.32 -3.15 -0.05 -18.77 16 19 C -0.12 -1.56 6.07 29.85 0.18 -1.37 16 20 C 0.09 1.36 6.34 71.98 0.46 1.82 16 21 O -0.59 -7.40 13.66 -148.98 -2.04 -9.43 16 22 C -0.02 -0.52 9.78 22.53 0.22 -0.30 16 23 C -0.25 -9.67 9.15 22.35 0.20 -9.46 16 24 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 25 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 26 H 0.13 4.64 7.55 -2.91 -0.02 4.62 16 27 H 0.16 1.99 8.02 -2.91 -0.02 1.96 16 28 H 0.41 4.16 8.65 -213.32 -1.85 2.32 16 29 H 0.13 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.13 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 33 H 0.40 1.73 9.12 -74.06 -0.68 1.05 16 34 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 35 H 0.13 5.16 5.62 -2.91 -0.02 5.14 16 Total: -1.00 -81.54 318.80 1.32 -80.22 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -1.37 Total: 18.75 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 4.28 Total: -23.82 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.32 Total: -76.66 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -2.30 Total: -41.62 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -81.54 1.32 -80.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318923384.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.084 kcal (2) G-P(sol) polarization free energy of solvation -81.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds