Wall clock time and date at job start Mon Mar 30 2020 23:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48505 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47262 * 300.00351 * 3 2 1 6 6 H 1.48504 * 109.46879 * 60.00775 * 3 2 1 7 7 C 1.38653 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99819 * 185.06205 * 9 7 2 11 11 C 1.39023 * 119.98999 * 174.18296 * 10 9 7 12 12 C 1.38210 * 120.24594 * 179.76269 * 11 10 9 13 13 C 1.38018 * 120.23341 * 0.50979 * 12 11 10 14 14 C 1.39726 * 119.97645 * 359.74466 * 13 12 11 15 15 C 1.47496 * 120.12074 * 180.02562 * 14 13 12 16 16 N 1.29753 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.40101 * 119.99856 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00048 * 179.97438 * 17 16 15 19 19 O 1.21313 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47002 * 180.02562 * 20 18 17 22 22 O 1.42901 * 109.46920 * 180.02562 * 21 20 18 23 23 C 1.38573 * 119.99489 * 354.45449 * 10 9 7 24 24 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.87318 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.88596 * 180.23875 * 12 11 10 27 27 H 1.07997 * 120.01264 * 179.76641 * 13 12 11 28 28 H 1.07999 * 119.99372 * 179.97438 * 15 14 13 29 29 H 0.97005 * 119.99822 * 359.97438 * 17 16 15 30 30 H 1.08998 * 109.47294 * 300.00365 * 20 18 17 31 31 H 1.08998 * 109.47083 * 60.00084 * 20 18 17 32 32 H 1.08995 * 109.46839 * 300.00377 * 21 20 18 33 33 H 1.08998 * 109.47184 * 60.00083 * 21 20 18 34 34 H 0.96697 * 114.00192 * 180.02562 * 22 21 20 35 35 H 1.08004 * 120.11255 * 359.95860 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1057 11 6 1.4343 -4.7344 0.2338 12 6 2.1777 -5.8949 0.3374 13 6 3.5567 -5.8403 0.3249 14 6 4.2056 -4.6090 0.2018 15 6 5.6791 -4.5470 0.1875 16 7 6.3754 -5.6371 0.2898 17 7 7.7751 -5.5781 0.2767 18 6 8.4983 -6.7103 0.3835 19 8 7.9373 -7.7806 0.4905 20 6 10.0039 -6.6470 0.3689 21 6 10.5752 -8.0600 0.5034 22 8 12.0028 -7.9998 0.4901 23 6 3.4540 -3.4379 0.0919 24 1 -0.4851 0.8401 0.0004 25 1 0.3555 -4.7834 0.2483 26 1 1.6778 -6.8475 0.4329 27 1 4.1341 -6.7490 0.4098 28 1 6.1785 -3.5942 0.0918 29 1 8.2237 -4.7223 0.1908 30 1 10.3400 -6.2074 -0.5702 31 1 10.3498 -6.0341 1.2012 32 1 10.2391 -8.4998 1.4423 33 1 10.2292 -8.6725 -0.3292 34 1 12.4336 -8.8617 0.5713 35 1 3.9495 -2.4831 -0.0038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319364664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:36 Heat of formation + Delta-G solvation = -47.799699 kcal Electronic energy + Delta-G solvation = -19755.315160 eV Core-core repulsion = 16334.365063 eV Total energy + Delta-G solvation = -3420.950098 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.89949 -39.09461 -37.35640 -36.91359 -35.92196 -32.94403 -32.27571 -31.48848 -29.73601 -28.69866 -25.47379 -24.57822 -23.01319 -21.68893 -20.67810 -20.21040 -18.39617 -18.10184 -17.03487 -16.85160 -16.41272 -16.34560 -15.11163 -14.71455 -14.68861 -14.37641 -14.16586 -14.03875 -13.74885 -13.68508 -12.87124 -12.84841 -12.47375 -12.20234 -11.74490 -11.72020 -11.36178 -10.96271 -10.91262 -10.86438 -10.48925 -10.39462 -10.28767 -10.06712 -9.47977 -9.39508 -8.86604 -7.93735 -7.30263 -6.49551 -4.09636 1.14500 2.24571 2.28753 2.36691 2.96148 3.08928 3.10585 3.14945 3.82097 3.91454 4.31107 4.54548 4.61348 4.74993 4.82815 5.01179 5.04555 5.11694 5.22830 5.39987 5.40148 5.64199 5.72557 5.89812 6.10386 6.25953 6.57005 6.71180 6.92130 6.99958 7.11499 7.17667 7.20168 7.32099 7.46961 7.67787 7.93642 8.27924 8.95741 9.64728 10.68426 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.002991 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.668327 B = 9359.374271 C =10493.828239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.394 4.394 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.168 4.168 12 C -0.086 4.086 13 C -0.163 4.163 14 C -0.026 4.026 15 C 0.136 3.864 16 N -0.245 5.245 17 N -0.587 5.587 18 C 0.534 3.466 19 O -0.509 6.509 20 C -0.136 4.136 21 C 0.091 3.909 22 O -0.578 6.578 23 C -0.200 4.200 24 H 0.270 0.730 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.384 0.616 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.386 0.614 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.669 -8.999 0.528 19.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.093 3.907 11 C -0.189 4.189 12 C -0.104 4.104 13 C -0.184 4.184 14 C -0.029 4.029 15 C -0.074 4.074 16 N -0.049 5.049 17 N -0.329 5.329 18 C 0.321 3.679 19 O -0.382 6.382 20 C -0.177 4.177 21 C 0.013 3.987 22 O -0.384 6.384 23 C -0.222 4.222 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.138 0.862 28 H 0.133 0.867 29 H 0.221 0.779 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.233 0.767 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.893 -9.932 0.619 19.606 hybrid contribution 1.024 1.718 -0.089 2.002 sum 17.916 -8.214 0.531 19.716 Atomic orbital electron populations 1.70042 1.05952 1.27607 1.45997 1.25281 0.95839 0.98818 0.96543 0.85657 0.79050 0.80452 0.78290 1.19154 1.20148 1.20147 1.21329 0.91729 0.80813 1.53119 0.89066 1.84015 1.33976 1.11291 1.78793 1.19175 0.89828 0.88351 0.93364 1.20442 0.99935 0.90320 1.08157 1.20656 0.93531 0.97007 0.99248 1.20892 0.94208 0.96615 1.06645 1.17985 0.87938 0.93998 1.02965 1.24684 0.94661 0.93955 0.94058 1.75075 0.88826 1.26346 1.14625 1.46985 1.02825 1.09786 1.73274 1.20267 0.88560 0.83077 0.76023 1.90740 1.72791 1.28258 1.46386 1.21444 0.90436 0.99931 1.05932 1.21773 0.80241 0.95097 1.01631 1.86373 1.19011 1.35721 1.97295 1.21195 0.93773 0.97637 1.09549 0.92021 0.86168 0.86469 0.86180 0.86681 0.77859 0.87756 0.87752 0.92438 0.92430 0.76679 0.84961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 2 C 0.04 1.05 5.49 -17.52 -0.10 0.96 16 3 Si 0.94 19.71 29.55 -169.99 -5.02 14.69 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 7 C -0.39 -10.49 9.48 30.89 0.29 -10.20 16 8 H 0.09 2.21 5.20 -52.48 -0.27 1.94 16 9 O -0.18 -4.83 9.76 0.01 0.00 -4.83 16 10 C 0.15 3.35 6.64 -39.17 -0.26 3.09 16 11 C -0.17 -3.40 9.98 -39.30 -0.39 -3.79 16 12 C -0.09 -1.52 10.02 -39.67 -0.40 -1.91 16 13 C -0.16 -2.91 9.58 -39.11 -0.37 -3.28 16 14 C -0.03 -0.47 5.87 -105.07 -0.62 -1.09 16 15 C 0.14 2.04 10.75 -14.66 -0.16 1.88 16 16 N -0.25 -3.83 10.15 32.16 0.33 -3.50 16 17 N -0.59 -7.07 6.26 31.22 0.20 -6.88 16 18 C 0.53 6.56 7.95 -10.99 -0.09 6.48 16 19 O -0.51 -8.44 16.32 5.53 0.09 -8.35 16 20 C -0.14 -1.09 6.07 -27.88 -0.17 -1.26 16 21 C 0.09 0.75 6.34 37.16 0.24 0.99 16 22 O -0.58 -4.37 13.66 -35.23 -0.48 -4.85 16 23 C -0.20 -4.04 8.91 -38.96 -0.35 -4.38 16 24 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 25 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.12 2.09 7.55 -52.49 -0.40 1.70 16 28 H 0.12 1.35 8.02 -52.49 -0.42 0.93 16 29 H 0.38 3.14 8.65 -182.59 -1.58 1.56 16 30 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 33 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.39 1.20 9.12 45.56 0.42 1.62 16 35 H 0.13 2.58 5.63 -52.48 -0.30 2.29 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -34.28 318.85 -5.92 -40.19 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.22 Total: 5.06 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -2.37 Total: -12.52 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 1.28 Total: -34.20 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.39 Total: -18.03 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.28 -5.92 -40.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319364664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.606 kcal (2) G-P(sol) polarization free energy of solvation -34.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds