Wall clock time and date at job start Mon Mar 30 2020 23:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48505 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47262 * 300.00351 * 3 2 1 6 6 H 1.48504 * 109.46879 * 60.00775 * 3 2 1 7 7 C 1.38653 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99819 * 185.06205 * 9 7 2 11 11 C 1.39023 * 119.98999 * 174.18296 * 10 9 7 12 12 C 1.38210 * 120.24594 * 179.76269 * 11 10 9 13 13 C 1.38018 * 120.23341 * 0.50979 * 12 11 10 14 14 C 1.39726 * 119.97645 * 359.74466 * 13 12 11 15 15 C 1.47496 * 120.12074 * 180.02562 * 14 13 12 16 16 N 1.29753 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.40101 * 119.99856 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00048 * 179.97438 * 17 16 15 19 19 O 1.21313 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47002 * 180.02562 * 20 18 17 22 22 O 1.42901 * 109.46920 * 180.02562 * 21 20 18 23 23 C 1.38573 * 119.99489 * 354.45449 * 10 9 7 24 24 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 25 25 H 1.08002 * 119.87318 * 0.02562 * 11 10 9 26 26 H 1.08001 * 119.88596 * 180.23875 * 12 11 10 27 27 H 1.07997 * 120.01264 * 179.76641 * 13 12 11 28 28 H 1.07999 * 119.99372 * 179.97438 * 15 14 13 29 29 H 0.97005 * 119.99822 * 359.97438 * 17 16 15 30 30 H 1.08998 * 109.47294 * 300.00365 * 20 18 17 31 31 H 1.08998 * 109.47083 * 60.00084 * 20 18 17 32 32 H 1.08995 * 109.46839 * 300.00377 * 21 20 18 33 33 H 1.08998 * 109.47184 * 60.00083 * 21 20 18 34 34 H 0.96697 * 114.00192 * 180.02562 * 22 21 20 35 35 H 1.08004 * 120.11255 * 359.95860 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8908 2.3965 -1.2124 6 1 1.8909 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1057 11 6 1.4343 -4.7344 0.2338 12 6 2.1777 -5.8949 0.3374 13 6 3.5567 -5.8403 0.3249 14 6 4.2056 -4.6090 0.2018 15 6 5.6791 -4.5470 0.1875 16 7 6.3754 -5.6371 0.2898 17 7 7.7751 -5.5781 0.2767 18 6 8.4983 -6.7103 0.3835 19 8 7.9373 -7.7806 0.4905 20 6 10.0039 -6.6470 0.3689 21 6 10.5752 -8.0600 0.5034 22 8 12.0028 -7.9998 0.4901 23 6 3.4540 -3.4379 0.0919 24 1 -0.4851 0.8401 0.0004 25 1 0.3555 -4.7834 0.2483 26 1 1.6778 -6.8475 0.4329 27 1 4.1341 -6.7490 0.4098 28 1 6.1785 -3.5942 0.0918 29 1 8.2237 -4.7223 0.1908 30 1 10.3400 -6.2074 -0.5702 31 1 10.3498 -6.0341 1.2012 32 1 10.2391 -8.4998 1.4423 33 1 10.2292 -8.6725 -0.3292 34 1 12.4336 -8.8617 0.5713 35 1 3.9495 -2.4831 -0.0038 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319364664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:35 Heat of formation + Delta-G solvation = -74.673388 kcal Electronic energy + Delta-G solvation = -19756.480491 eV Core-core repulsion = 16334.365063 eV Total energy + Delta-G solvation = -3422.115428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.94182 -40.70426 -38.61798 -37.80780 -37.21102 -34.37259 -33.89371 -32.40658 -31.08917 -30.22435 -27.33833 -25.63963 -24.09997 -23.27632 -21.70095 -21.51392 -19.89509 -19.13460 -18.51992 -18.03202 -17.38710 -17.10474 -16.74143 -16.28626 -15.98798 -15.59157 -15.45997 -15.28023 -15.06623 -14.76296 -14.37561 -14.14952 -13.96571 -13.50913 -13.04986 -12.85798 -12.50219 -12.47619 -12.39062 -12.30657 -12.04860 -11.41304 -11.33785 -11.07772 -10.98439 -10.84561 -10.52904 -9.35835 -8.95304 -8.42692 -6.11098 -0.20028 0.70455 1.18387 1.33805 1.39927 1.47928 1.57682 1.80176 2.20910 2.89716 3.14852 3.21471 3.50782 3.61770 3.64801 3.95330 4.02806 4.22486 4.28304 4.35365 4.37099 4.52597 4.61245 4.77153 4.79940 4.84101 5.05915 5.13325 5.19979 5.60671 5.65586 5.66022 6.02777 6.05022 6.12998 6.39694 6.82148 7.02167 7.30793 7.81804 8.80589 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.002991 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.668327 B = 9359.374271 C =10493.828239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.245 1.245 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.410 4.410 8 H 0.109 0.891 9 O -0.229 6.229 10 C 0.111 3.889 11 C -0.181 4.181 12 C -0.075 4.075 13 C -0.156 4.156 14 C -0.022 4.022 15 C 0.135 3.865 16 N -0.269 5.269 17 N -0.576 5.576 18 C 0.533 3.467 19 O -0.557 6.557 20 C -0.125 4.125 21 C 0.092 3.908 22 O -0.586 6.586 23 C -0.200 4.200 24 H 0.271 0.729 25 H 0.120 0.880 26 H 0.153 0.847 27 H 0.131 0.869 28 H 0.150 0.850 29 H 0.407 0.593 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.404 0.596 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.139 -9.313 0.601 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.168 1.168 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.487 4.487 8 H 0.126 0.874 9 O -0.136 6.136 10 C 0.061 3.939 11 C -0.202 4.202 12 C -0.093 4.093 13 C -0.177 4.177 14 C -0.025 4.025 15 C -0.075 4.075 16 N -0.073 5.073 17 N -0.320 5.320 18 C 0.322 3.678 19 O -0.433 6.433 20 C -0.166 4.166 21 C 0.014 3.986 22 O -0.395 6.395 23 C -0.222 4.222 24 H 0.080 0.920 25 H 0.138 0.862 26 H 0.171 0.829 27 H 0.149 0.851 28 H 0.167 0.833 29 H 0.248 0.752 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.254 0.746 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 20.423 -10.286 0.692 22.877 hybrid contribution 0.138 1.449 -0.089 1.458 sum 20.561 -8.837 0.603 22.388 Atomic orbital electron populations 1.70196 1.08112 1.28647 1.49060 1.26579 0.96797 1.02789 0.96009 0.84538 0.78621 0.74912 0.78224 1.16768 1.19771 1.19828 1.21894 0.92711 0.81216 1.52828 0.87413 1.83987 1.35668 1.12449 1.81483 1.19699 0.91248 0.88117 0.94819 1.20665 1.00396 0.90462 1.08628 1.21011 0.93537 0.97477 0.97242 1.21198 0.94458 0.97094 1.04961 1.18195 0.89950 0.93062 1.01271 1.24539 0.93025 0.95407 0.94546 1.74909 0.91218 1.27464 1.13727 1.46900 1.01383 1.11140 1.72618 1.21116 0.90114 0.82208 0.74381 1.90724 1.73975 1.30034 1.48559 1.21443 0.86782 1.00332 1.08023 1.21680 0.80766 0.95179 1.01014 1.86324 1.18422 1.37544 1.97246 1.21238 0.92833 0.98743 1.09340 0.91979 0.86188 0.82906 0.85105 0.83271 0.75215 0.85489 0.85495 0.93180 0.93161 0.74565 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.08 13.67 21.61 0.30 -54.79 16 2 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 3 Si 1.02 40.72 29.55 68.60 2.03 42.74 16 4 H -0.24 -8.73 7.11 99.48 0.71 -8.03 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 6 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.41 -22.53 9.48 67.92 0.64 -21.89 16 8 H 0.11 5.25 5.20 -2.91 -0.02 5.24 16 9 O -0.23 -13.12 9.76 -22.86 -0.22 -13.35 16 10 C 0.11 5.24 6.64 22.54 0.15 5.39 16 11 C -0.18 -7.39 9.98 22.45 0.22 -7.17 16 12 C -0.07 -2.51 10.02 22.21 0.22 -2.29 16 13 C -0.16 -5.27 9.58 22.58 0.22 -5.06 16 14 C -0.02 -0.76 5.87 -20.15 -0.12 -0.88 16 15 C 0.13 3.64 10.75 87.44 0.94 4.58 16 16 N -0.27 -7.68 10.15 -52.16 -0.53 -8.21 16 17 N -0.58 -12.06 6.26 -173.51 -1.09 -13.14 16 18 C 0.53 11.74 7.95 87.66 0.70 12.44 16 19 O -0.56 -17.73 16.32 -3.13 -0.05 -17.78 16 20 C -0.12 -1.59 6.07 29.85 0.18 -1.41 16 21 C 0.09 1.32 6.34 71.98 0.46 1.78 16 22 O -0.59 -7.27 13.66 -148.98 -2.03 -9.31 16 23 C -0.20 -8.00 8.91 22.67 0.20 -7.80 16 24 H 0.27 14.87 8.31 -92.70 -0.77 14.10 16 25 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 27 H 0.13 4.22 7.55 -2.91 -0.02 4.19 16 28 H 0.15 2.92 8.02 -2.91 -0.02 2.90 16 29 H 0.41 5.01 8.65 -213.31 -1.85 3.16 16 30 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 33 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 34 H 0.40 1.57 9.12 -74.06 -0.68 0.89 16 35 H 0.14 5.24 5.63 -2.91 -0.02 5.22 16 Total: -1.00 -78.02 318.85 1.31 -76.72 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -1.37 Total: 20.26 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.28 Total: -23.16 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -1.32 Total: -76.14 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -2.31 Total: -40.43 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Total: -78.02 1.31 -76.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319364664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.045 kcal (2) G-P(sol) polarization free energy of solvation -78.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds