Wall clock time and date at job start Mon Mar 30 2020 23:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 O 1.42894 * 112.94919 * 50.33180 * 9 7 2 11 11 C 1.53947 * 113.74185 * 278.73491 * 9 7 2 12 12 N 1.47805 * 86.03897 * 222.08945 * 11 9 7 13 13 C 1.34785 * 134.45494 * 204.64112 * 12 11 9 14 14 O 1.21281 * 119.99980 * 179.86464 * 13 12 11 15 15 C 1.50696 * 119.99792 * 359.87006 * 13 12 11 16 16 H 1.08997 * 109.47443 * 54.99920 * 15 13 12 17 17 O 1.42905 * 109.46753 * 174.99510 * 15 13 12 18 18 C 1.50700 * 109.47156 * 294.99682 * 15 13 12 19 19 C 1.38673 * 120.41790 * 100.00470 * 18 15 13 20 20 C 1.38622 * 118.41886 * 180.02562 * 19 18 15 21 21 C 1.38227 * 119.16453 * 0.02562 * 20 19 18 22 22 N 1.31855 * 120.75997 * 359.97438 * 21 20 19 23 23 C 1.31883 * 121.73014 * 359.70944 * 22 21 20 24 24 C 1.47576 * 91.05109 * 24.55080 * 12 11 9 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96701 * 113.99575 * 309.66389 * 10 9 7 27 27 H 1.09008 * 113.77009 * 336.35737 * 11 9 7 28 28 H 1.08997 * 113.76744 * 107.74417 * 11 9 7 29 29 H 0.96698 * 113.99673 * 60.00233 * 17 15 13 30 30 H 1.07999 * 120.79126 * 359.97438 * 19 18 15 31 31 H 1.08004 * 120.42138 * 180.02562 * 20 19 18 32 32 H 1.07997 * 119.62400 * 179.97438 * 21 20 19 33 33 H 1.07996 * 119.62421 * 180.30592 * 23 22 21 34 34 H 1.08999 * 113.76805 * 221.15228 * 24 12 11 35 35 H 1.09000 * 113.87378 * 89.76768 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 8 4.0683 -0.3548 1.0137 11 6 4.1319 -0.9791 -1.3924 12 7 5.0923 -2.0373 -1.0150 13 6 6.3443 -2.3564 -1.3989 14 8 6.9074 -3.3080 -0.9006 15 6 7.0444 -1.5307 -2.4472 16 1 7.0509 -0.4846 -2.1412 17 8 8.3888 -1.9915 -2.5969 18 6 6.3180 -1.6654 -3.7606 19 6 5.4431 -0.6761 -4.1838 20 6 4.7965 -0.8427 -5.3986 21 6 5.0432 -1.9815 -6.1423 22 7 5.8819 -2.9018 -5.7085 23 6 6.5191 -2.7738 -4.5609 24 6 4.1313 -2.6024 -0.0480 25 1 -0.4850 0.8401 0.0004 26 1 3.7023 0.5402 1.0280 27 1 3.4726 -1.2571 -2.2148 28 1 4.5870 0.0025 -1.5238 29 1 8.4595 -2.9168 -2.8684 30 1 5.2689 0.2028 -3.5808 31 1 4.1088 -0.0923 -5.7595 32 1 4.5432 -2.1191 -7.0896 33 1 7.2024 -3.5464 -4.2407 34 1 4.5862 -2.9145 0.8921 35 1 3.4712 -3.3587 -0.4728 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321916388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:53 Heat of formation + Delta-G solvation = -66.880051 kcal Electronic energy + Delta-G solvation = -22105.466615 eV Core-core repulsion = 18683.689131 eV Total energy + Delta-G solvation = -3421.777484 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.96401 -40.93157 -39.64287 -37.51315 -36.28034 -34.55400 -33.91014 -32.56584 -30.88947 -28.59962 -27.25329 -26.71047 -24.61773 -23.66569 -22.01328 -20.57127 -19.43173 -18.89147 -18.61778 -18.11702 -17.78097 -17.39366 -16.93169 -16.43946 -15.67304 -15.43307 -15.32506 -15.10239 -14.89058 -14.68482 -14.47652 -14.25331 -14.07691 -13.86048 -13.38929 -13.10874 -12.96448 -12.66446 -12.45541 -12.26520 -11.94193 -11.42793 -11.09981 -10.98714 -10.81024 -10.49880 -10.46680 -9.99250 -9.75561 -8.41786 -6.55701 -0.02264 0.23970 1.25629 1.29469 1.38307 1.42768 1.71309 2.19233 2.69776 2.76904 3.10181 3.20186 3.29574 3.44441 3.59931 3.72462 3.79684 3.95039 4.01145 4.29472 4.31998 4.39472 4.51863 4.58584 4.61013 4.72027 4.73245 4.88904 5.07661 5.15922 5.27442 5.65176 6.04176 6.31994 6.52195 6.61346 6.70081 6.90212 6.91641 7.12855 8.73580 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018584 B = 0.006662 C = 0.005656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.339027 B = 4201.641389 C = 4949.248105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.028 3.972 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.219 1.219 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.186 3.814 10 O -0.560 6.560 11 C 0.080 3.920 12 N -0.625 5.625 13 C 0.503 3.497 14 O -0.581 6.581 15 C 0.158 3.842 16 H 0.147 0.853 17 O -0.535 6.535 18 C -0.177 4.177 19 C -0.064 4.064 20 C -0.162 4.162 21 C 0.094 3.906 22 N -0.506 5.506 23 C 0.099 3.901 24 C 0.121 3.879 25 H 0.274 0.726 26 H 0.358 0.642 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.391 0.609 30 H 0.156 0.844 31 H 0.171 0.829 32 H 0.185 0.815 33 H 0.157 0.843 34 H 0.070 0.930 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.700 3.490 -11.362 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.173 4.173 3 Si 0.740 3.260 4 H -0.187 1.187 5 H -0.142 1.142 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.145 3.855 10 O -0.372 6.372 11 C -0.042 4.042 12 N -0.359 5.359 13 C 0.293 3.707 14 O -0.462 6.462 15 C 0.094 3.906 16 H 0.164 0.836 17 O -0.342 6.342 18 C -0.180 4.180 19 C -0.090 4.090 20 C -0.181 4.181 21 C -0.062 4.062 22 N -0.215 5.215 23 C -0.057 4.057 24 C -0.001 4.001 25 H 0.083 0.917 26 H 0.210 0.790 27 H 0.120 0.880 28 H 0.114 0.886 29 H 0.242 0.758 30 H 0.173 0.827 31 H 0.188 0.812 32 H 0.202 0.798 33 H 0.175 0.825 34 H 0.088 0.912 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.666 2.356 -11.394 15.785 hybrid contribution -0.905 0.996 0.668 1.502 sum 9.761 3.352 -10.727 14.886 Atomic orbital electron populations 1.70008 1.08183 1.28891 1.49044 1.25863 0.95610 1.03023 0.92826 0.86381 0.80549 0.79005 0.80070 1.18675 1.14211 1.20656 1.21313 0.89498 0.94548 1.53036 0.92989 1.20561 0.90865 0.88914 0.85122 1.86474 1.67268 1.26119 1.57322 1.24580 0.88219 0.91102 1.00329 1.50124 1.12162 1.32514 1.41119 1.21576 0.80681 0.85057 0.83405 1.90662 1.66004 1.31322 1.58262 1.20445 0.81950 0.99489 0.88678 0.83618 1.86594 1.22604 1.33875 1.91115 1.21119 1.01397 0.98080 0.97355 1.21832 0.92708 0.98237 0.96230 1.22526 1.00728 1.00084 0.94787 1.23405 0.93165 0.89261 1.00402 1.67735 1.08263 1.30760 1.14707 1.22602 0.97067 0.95835 0.90224 1.23280 0.87907 0.96769 0.92172 0.91694 0.78964 0.87998 0.88607 0.75831 0.82687 0.81193 0.79829 0.82537 0.91159 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.83 13.96 21.45 0.30 -50.53 16 2 C 0.03 1.40 5.47 84.66 0.46 1.86 16 3 Si 0.92 34.83 24.31 68.60 1.67 36.49 16 4 H -0.26 -9.72 7.05 99.48 0.70 -9.02 16 5 H -0.22 -6.89 5.16 99.48 0.51 -6.38 16 6 H -0.28 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.55 -27.30 9.19 25.60 0.24 -27.06 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 9 C 0.19 7.81 1.06 -10.88 -0.01 7.80 16 10 O -0.56 -23.91 13.35 -148.98 -1.99 -25.90 16 11 C 0.08 2.71 5.29 86.44 0.46 3.17 16 12 N -0.63 -22.48 3.59 -839.63 -3.01 -25.49 16 13 C 0.50 17.55 7.38 87.65 0.65 18.20 16 14 O -0.58 -24.08 17.05 15.96 0.27 -23.81 16 15 C 0.16 4.18 3.43 29.10 0.10 4.28 16 16 H 0.15 3.38 8.03 -2.39 -0.02 3.36 16 17 O -0.54 -14.07 12.85 -129.99 -1.67 -15.74 16 18 C -0.18 -4.23 4.71 -19.77 -0.09 -4.33 16 19 C -0.06 -1.31 8.38 22.47 0.19 -1.12 16 20 C -0.16 -2.86 10.11 22.36 0.23 -2.63 16 21 C 0.09 1.85 11.18 84.69 0.95 2.80 16 22 N -0.51 -12.67 10.36 -195.85 -2.03 -14.70 16 23 C 0.10 2.46 10.49 84.67 0.89 3.35 16 24 C 0.12 4.84 8.23 86.49 0.71 5.55 16 25 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 26 H 0.36 14.06 3.57 -74.06 -0.26 13.80 16 27 H 0.10 3.36 8.00 -2.38 -0.02 3.34 16 28 H 0.10 2.74 6.14 -2.39 -0.01 2.73 16 29 H 0.39 8.56 7.27 -74.06 -0.54 8.02 16 30 H 0.16 2.57 7.14 -2.91 -0.02 2.55 16 31 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.16 3.46 6.79 -2.91 -0.02 3.44 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.10 3.80 8.09 -2.39 -0.02 3.78 16 Total: -1.00 -67.25 295.37 -1.56 -68.81 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.15 Total: 39.00 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: 4.76 Total: 11.86 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -4.74 Total: -90.72 kcal Atomic # 8 Polarization: -62.07 SS G_CDS: -3.39 Total: -65.45 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 1.67 Total: 36.49 kcal Total: -67.25 -1.56 -68.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321916388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.934 kcal (2) G-P(sol) polarization free energy of solvation -67.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds