Wall clock time and date at job start Mon Mar 30 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47073 * 299.99982 * 3 2 1 6 6 H 1.48494 * 109.47295 * 60.00166 * 3 2 1 7 7 C 1.37877 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00600 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99683 * 359.97438 * 7 2 1 10 10 O 1.42905 * 112.94330 * 309.66668 * 9 7 2 11 11 C 1.53938 * 113.74319 * 81.26065 * 9 7 2 12 12 N 1.47930 * 85.99946 * 138.00309 * 11 9 7 13 13 C 1.34776 * 134.49981 * 155.33206 * 12 11 9 14 14 O 1.21282 * 119.99405 * 180.02562 * 13 12 11 15 15 C 1.50692 * 120.00310 * 0.03730 * 13 12 11 16 16 H 1.08999 * 109.47033 * 304.99449 * 15 13 12 17 17 O 1.42904 * 109.47070 * 184.99519 * 15 13 12 18 18 C 1.50699 * 109.47236 * 64.99774 * 15 13 12 19 19 C 1.38682 * 120.41610 * 264.72014 * 18 15 13 20 20 C 1.38628 * 118.41589 * 179.78271 * 19 18 15 21 21 C 1.38225 * 119.16451 * 0.51327 * 20 19 18 22 22 N 1.31854 * 120.76411 * 359.72767 * 21 20 19 23 23 C 1.31885 * 121.72284 * 0.02562 * 22 21 20 24 24 C 1.47578 * 91.00545 * 335.36107 * 12 11 9 25 25 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00036 * 50.33455 * 10 9 7 27 27 H 1.09003 * 113.77501 * 252.36190 * 11 9 7 28 28 H 1.09003 * 113.76864 * 23.76107 * 11 9 7 29 29 H 0.96697 * 114.00353 * 299.99933 * 17 15 13 30 30 H 1.07994 * 120.78911 * 0.02562 * 19 18 15 31 31 H 1.08001 * 120.41666 * 180.21912 * 20 19 18 32 32 H 1.07993 * 119.61706 * 179.70422 * 21 20 19 33 33 H 1.08004 * 119.61752 * 180.02562 * 23 22 21 34 34 H 1.09007 * 113.76850 * 270.34096 * 24 12 11 35 35 H 1.08994 * 113.87568 * 138.95075 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5618 1.0129 11 6 0.7551 -2.9285 -1.3932 12 7 1.1898 -4.2907 -1.0138 13 6 0.8394 -5.5348 -1.3959 14 8 1.3825 -6.4977 -0.8972 15 6 -0.2268 -5.7293 -2.4428 16 1 -1.1356 -5.2114 -2.1364 17 8 -0.5003 -7.1241 -2.5907 18 6 0.2517 -5.1691 -3.7574 19 6 -0.0887 -3.8793 -4.1366 20 6 0.3779 -3.4043 -5.3525 21 6 1.1524 -4.2299 -6.1458 22 7 1.4523 -5.4530 -5.7553 23 6 1.0300 -5.9362 -4.6031 24 6 2.1607 -3.7402 -0.0484 25 1 -0.4850 0.8401 0.0004 26 1 -0.3467 -1.7974 1.0272 27 1 -0.3224 -2.8302 -1.5256 28 1 1.3270 -2.4979 -2.2152 29 1 0.2653 -7.6484 -2.8625 30 1 -0.6994 -3.2584 -3.4980 31 1 0.1353 -2.4035 -5.6781 32 1 1.5157 -3.8690 -7.0966 33 1 1.2964 -6.9430 -4.3167 34 1 3.1446 -3.5473 -0.4763 35 1 2.2062 -4.2881 0.8927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321916410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:56 Heat of formation + Delta-G solvation = -58.343565 kcal Electronic energy + Delta-G solvation = -21994.262750 eV Core-core repulsion = 18572.855436 eV Total energy + Delta-G solvation = -3421.407314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66708 -39.41410 -37.93548 -36.11779 -34.10933 -32.82845 -32.31170 -31.52784 -29.14670 -26.94676 -25.49873 -25.04612 -23.59216 -22.53699 -20.30255 -18.83092 -17.69613 -17.61506 -17.01142 -16.66563 -16.17005 -15.66439 -15.17394 -14.81495 -14.38449 -14.32423 -13.85362 -13.78926 -13.14341 -13.06117 -12.96799 -12.65608 -12.25142 -12.09570 -11.84743 -11.66579 -11.19392 -11.13092 -10.98221 -10.58303 -10.38935 -10.04491 -9.63597 -9.54493 -9.35427 -8.96481 -8.83706 -8.49821 -7.98313 -6.48468 -4.58594 0.97016 1.21696 2.92653 3.07293 3.17526 3.20878 3.32335 3.71695 4.11379 4.25105 4.38097 4.59554 4.70619 4.76421 4.81755 4.91214 5.00337 5.33364 5.47817 5.50035 5.65317 5.81107 6.03304 6.04727 6.14030 6.24737 6.34895 6.45231 6.52848 6.58014 6.98106 7.42080 7.54280 7.72242 7.86400 8.28902 8.45257 8.52244 9.12894 9.32558 10.58330 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.006091 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.305713 B = 4595.661089 C = 5526.370842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.239 3.761 10 O -0.572 6.572 11 C 0.078 3.922 12 N -0.624 5.624 13 C 0.505 3.495 14 O -0.554 6.554 15 C 0.144 3.856 16 H 0.132 0.868 17 O -0.531 6.531 18 C -0.164 4.164 19 C -0.055 4.055 20 C -0.166 4.166 21 C 0.097 3.903 22 N -0.483 5.483 23 C 0.111 3.889 24 C 0.111 3.889 25 H 0.273 0.727 26 H 0.392 0.608 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.380 0.620 30 H 0.143 0.857 31 H 0.140 0.860 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.086 0.914 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.161 -3.299 -9.473 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.197 3.803 10 O -0.383 6.383 11 C -0.044 4.044 12 N -0.358 5.358 13 C 0.293 3.707 14 O -0.434 6.434 15 C 0.081 3.919 16 H 0.149 0.851 17 O -0.336 6.336 18 C -0.167 4.167 19 C -0.081 4.081 20 C -0.186 4.186 21 C -0.060 4.060 22 N -0.191 5.191 23 C -0.046 4.046 24 C -0.010 4.010 25 H 0.083 0.917 26 H 0.247 0.753 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.230 0.770 30 H 0.160 0.840 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.104 0.896 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.889 -4.790 -9.513 10.687 hybrid contribution 0.123 1.954 0.162 1.965 sum -0.766 -2.836 -9.351 9.801 Atomic orbital electron populations 1.69396 1.06134 1.28146 1.50105 1.25053 0.95036 0.99855 0.92999 0.86299 0.80157 0.82291 0.77927 1.19438 1.20660 1.20561 1.21529 0.93991 0.89863 1.52126 0.91002 1.19852 0.85690 0.91276 0.83476 1.86075 1.47088 1.49845 1.55327 1.24475 0.99742 0.77344 1.02843 1.50267 1.39772 1.04655 1.41155 1.20756 0.84298 0.82383 0.83310 1.90663 1.56132 1.39438 1.57154 1.20513 0.98351 0.83694 0.89355 0.85097 1.86614 1.39242 1.16500 1.91209 1.21240 1.01148 0.96487 0.97779 1.21622 0.96643 0.94123 0.95725 1.22168 0.99497 1.01598 0.95328 1.22813 0.94326 0.89438 0.99408 1.67698 1.20909 1.14655 1.15871 1.22409 0.92989 0.99619 0.89608 1.23487 0.93297 0.92751 0.91501 0.91685 0.75305 0.91291 0.89904 0.77047 0.83967 0.84246 0.82647 0.83113 0.89568 0.90932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.48 11.20 55.43 0.62 -20.86 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.64 16 3 Si 0.91 18.72 29.54 -169.99 -5.02 13.70 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.54 -12.87 8.61 -34.44 -0.30 -13.17 16 8 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.24 5.43 1.40 -90.85 -0.13 5.30 16 10 O -0.57 -14.02 13.48 -35.23 -0.48 -14.50 16 11 C 0.08 1.54 5.94 -2.78 -0.02 1.53 16 12 N -0.62 -12.49 3.59 -178.01 -0.64 -13.13 16 13 C 0.50 9.81 7.38 -10.99 -0.08 9.73 16 14 O -0.55 -12.29 17.05 -14.30 -0.24 -12.54 16 15 C 0.14 2.25 3.44 -29.04 -0.10 2.15 16 16 H 0.13 1.94 8.06 -51.93 -0.42 1.52 16 17 O -0.53 -7.96 12.80 -55.09 -0.70 -8.67 16 18 C -0.16 -2.32 4.82 -104.48 -0.50 -2.82 16 19 C -0.06 -0.72 8.14 -39.27 -0.32 -1.04 16 20 C -0.17 -1.92 10.11 -39.44 -0.40 -2.32 16 21 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 22 N -0.48 -6.75 10.36 -13.25 -0.14 -6.88 16 23 C 0.11 1.53 10.49 -17.55 -0.18 1.35 16 24 C 0.11 2.35 8.23 -2.97 -0.02 2.33 16 25 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 26 H 0.39 9.65 6.60 45.56 0.30 9.95 16 27 H 0.07 1.31 7.23 -51.93 -0.38 0.93 16 28 H 0.08 1.59 7.82 -51.93 -0.41 1.19 16 29 H 0.38 4.71 7.17 45.56 0.33 5.04 16 30 H 0.14 1.77 6.59 -52.49 -0.35 1.43 16 31 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.80 6.63 -52.48 -0.35 1.45 16 34 H 0.09 1.69 8.09 -51.92 -0.42 1.27 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -28.93 303.05 -6.88 -35.81 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -2.50 Total: 16.88 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -2.34 Total: 5.62 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.16 Total: -40.88 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.42 Total: -35.70 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -28.93 -6.88 -35.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321916410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.538 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds