Wall clock time and date at job start Mon Mar 30 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00128 * 2 1 4 4 H 1.48503 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47073 * 299.99982 * 3 2 1 6 6 H 1.48494 * 109.47295 * 60.00166 * 3 2 1 7 7 C 1.37877 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00600 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99683 * 359.97438 * 7 2 1 10 10 O 1.42905 * 112.94330 * 309.66668 * 9 7 2 11 11 C 1.53938 * 113.74319 * 81.26065 * 9 7 2 12 12 N 1.47930 * 85.99946 * 138.00309 * 11 9 7 13 13 C 1.34776 * 134.49981 * 155.33206 * 12 11 9 14 14 O 1.21282 * 119.99405 * 180.02562 * 13 12 11 15 15 C 1.50692 * 120.00310 * 0.03730 * 13 12 11 16 16 H 1.08999 * 109.47033 * 304.99449 * 15 13 12 17 17 O 1.42904 * 109.47070 * 184.99519 * 15 13 12 18 18 C 1.50699 * 109.47236 * 64.99774 * 15 13 12 19 19 C 1.38682 * 120.41610 * 264.72014 * 18 15 13 20 20 C 1.38628 * 118.41589 * 179.78271 * 19 18 15 21 21 C 1.38225 * 119.16451 * 0.51327 * 20 19 18 22 22 N 1.31854 * 120.76411 * 359.72767 * 21 20 19 23 23 C 1.31885 * 121.72284 * 0.02562 * 22 21 20 24 24 C 1.47578 * 91.00545 * 335.36107 * 12 11 9 25 25 H 0.97001 * 119.99758 * 359.97438 * 1 2 3 26 26 H 0.96696 * 114.00036 * 50.33455 * 10 9 7 27 27 H 1.09003 * 113.77501 * 252.36190 * 11 9 7 28 28 H 1.09003 * 113.76864 * 23.76107 * 11 9 7 29 29 H 0.96697 * 114.00353 * 299.99933 * 17 15 13 30 30 H 1.07994 * 120.78911 * 0.02562 * 19 18 15 31 31 H 1.08001 * 120.41666 * 180.21912 * 20 19 18 32 32 H 1.07993 * 119.61706 * 179.70422 * 21 20 19 33 33 H 1.08004 * 119.61752 * 180.02562 * 23 22 21 34 34 H 1.09007 * 113.76850 * 270.34096 * 24 12 11 35 35 H 1.08994 * 113.87568 * 138.95075 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.2454 -2.5618 1.0129 11 6 0.7551 -2.9285 -1.3932 12 7 1.1898 -4.2907 -1.0138 13 6 0.8394 -5.5348 -1.3959 14 8 1.3825 -6.4977 -0.8972 15 6 -0.2268 -5.7293 -2.4428 16 1 -1.1356 -5.2114 -2.1364 17 8 -0.5003 -7.1241 -2.5907 18 6 0.2517 -5.1691 -3.7574 19 6 -0.0887 -3.8793 -4.1366 20 6 0.3779 -3.4043 -5.3525 21 6 1.1524 -4.2299 -6.1458 22 7 1.4523 -5.4530 -5.7553 23 6 1.0300 -5.9362 -4.6031 24 6 2.1607 -3.7402 -0.0484 25 1 -0.4850 0.8401 0.0004 26 1 -0.3467 -1.7974 1.0272 27 1 -0.3224 -2.8302 -1.5256 28 1 1.3270 -2.4979 -2.2152 29 1 0.2653 -7.6484 -2.8625 30 1 -0.6994 -3.2584 -3.4980 31 1 0.1353 -2.4035 -5.6781 32 1 1.5157 -3.8690 -7.0966 33 1 1.2964 -6.9430 -4.3167 34 1 3.1446 -3.5473 -0.4763 35 1 2.2062 -4.2881 0.8927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321916410.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:58:56 Heat of formation + Delta-G solvation = -80.333851 kcal Electronic energy + Delta-G solvation = -21995.216320 eV Core-core repulsion = 18572.855436 eV Total energy + Delta-G solvation = -3422.360884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89077 -40.78609 -39.45765 -37.47291 -35.87541 -34.15837 -33.89349 -32.53669 -30.69199 -28.38542 -27.12126 -26.63503 -24.58955 -23.64628 -21.90437 -20.37238 -19.35462 -18.82055 -18.46987 -17.83079 -17.33815 -17.20732 -16.77522 -16.33976 -15.97529 -15.36688 -15.23153 -14.92333 -14.64288 -14.48724 -14.33656 -14.06028 -13.77114 -13.44236 -13.36412 -13.09398 -12.81839 -12.78785 -12.28752 -12.24832 -12.18375 -11.41023 -11.04276 -10.78630 -10.65902 -10.47714 -10.30274 -9.96186 -9.64803 -8.27256 -6.43421 -0.01469 0.23918 1.42136 1.44815 1.51154 1.59788 1.79925 2.40486 2.71031 2.95106 3.18578 3.20900 3.40323 3.60107 3.73518 3.76616 3.95883 4.01666 4.13169 4.35190 4.41515 4.53425 4.55596 4.71951 4.73402 4.81868 4.86361 5.10278 5.17741 5.21846 5.65305 5.72539 5.92003 6.33350 6.61649 6.72370 6.90085 6.96357 7.29920 7.44151 8.78897 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.018733 B = 0.006091 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.305713 B = 4595.661089 C = 5526.370842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.039 3.961 3 Si 0.963 3.037 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.219 3.781 10 O -0.586 6.586 11 C 0.100 3.900 12 N -0.625 5.625 13 C 0.499 3.501 14 O -0.587 6.587 15 C 0.158 3.842 16 H 0.139 0.861 17 O -0.536 6.536 18 C -0.175 4.175 19 C -0.064 4.064 20 C -0.162 4.162 21 C 0.096 3.904 22 N -0.503 5.503 23 C 0.100 3.900 24 C 0.108 3.892 25 H 0.276 0.724 26 H 0.389 0.611 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.391 0.609 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.160 0.840 34 H 0.099 0.901 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.191 -2.263 -11.131 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.162 4.162 3 Si 0.788 3.212 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.209 1.209 7 C -0.594 4.594 8 H 0.086 0.914 9 C 0.178 3.822 10 O -0.398 6.398 11 C -0.022 4.022 12 N -0.359 5.359 13 C 0.289 3.711 14 O -0.469 6.469 15 C 0.095 3.905 16 H 0.157 0.843 17 O -0.342 6.342 18 C -0.178 4.178 19 C -0.090 4.090 20 C -0.181 4.181 21 C -0.061 4.061 22 N -0.212 5.212 23 C -0.056 4.056 24 C -0.014 4.014 25 H 0.086 0.914 26 H 0.243 0.757 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.242 0.758 30 H 0.165 0.835 31 H 0.186 0.814 32 H 0.205 0.795 33 H 0.178 0.822 34 H 0.117 0.883 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.923 -3.766 -11.184 11.837 hybrid contribution 0.146 1.626 0.671 1.765 sum -0.777 -2.140 -10.513 10.757 Atomic orbital electron populations 1.69441 1.06833 1.28880 1.49986 1.25637 0.95751 1.02177 0.92648 0.85430 0.78908 0.79047 0.77777 1.19592 1.19944 1.20928 1.21698 0.94007 0.90779 1.52936 0.91383 1.20116 0.85886 0.91567 0.84666 1.86063 1.47488 1.49710 1.56494 1.24222 1.00172 0.76709 1.01128 1.50277 1.39537 1.05164 1.40907 1.21539 0.84571 0.81497 0.83483 1.90637 1.57527 1.40250 1.58492 1.20383 0.97013 0.84166 0.88972 0.84342 1.86588 1.39979 1.16489 1.91174 1.21099 1.02322 0.97229 0.97168 1.21807 0.96831 0.93753 0.96615 1.22496 0.98491 1.02744 0.94383 1.23407 0.93505 0.88701 1.00453 1.67751 1.21605 1.15889 1.15962 1.22604 0.93020 1.00218 0.89784 1.23484 0.94068 0.92251 0.91617 0.91371 0.75702 0.90524 0.89081 0.75834 0.83538 0.81410 0.79545 0.82247 0.88262 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.76 11.20 21.45 0.24 -42.52 16 2 C 0.04 1.82 5.39 84.66 0.46 2.27 16 3 Si 0.96 37.48 29.54 68.60 2.03 39.50 16 4 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.56 -26.37 8.61 25.60 0.22 -26.15 16 8 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.22 9.90 1.40 -10.88 -0.02 9.89 16 10 O -0.59 -28.93 13.48 -148.98 -2.01 -30.94 16 11 C 0.10 3.82 5.94 86.42 0.51 4.34 16 12 N -0.63 -24.74 3.59 -839.32 -3.02 -27.76 16 13 C 0.50 19.23 7.38 87.65 0.65 19.88 16 14 O -0.59 -26.16 17.05 15.95 0.27 -25.89 16 15 C 0.16 4.78 3.44 29.10 0.10 4.88 16 16 H 0.14 3.94 8.06 -2.39 -0.02 3.92 16 17 O -0.54 -15.63 12.80 -129.99 -1.66 -17.30 16 18 C -0.18 -4.71 4.82 -19.77 -0.10 -4.81 16 19 C -0.06 -1.54 8.14 22.47 0.18 -1.36 16 20 C -0.16 -3.24 10.11 22.36 0.23 -3.01 16 21 C 0.10 2.00 11.18 84.69 0.95 2.94 16 22 N -0.50 -13.10 10.36 -195.85 -2.03 -15.13 16 23 C 0.10 2.64 10.49 84.67 0.89 3.53 16 24 C 0.11 4.57 8.23 86.49 0.71 5.29 16 25 H 0.28 12.27 8.31 -92.71 -0.77 11.50 16 26 H 0.39 19.26 6.60 -74.06 -0.49 18.77 16 27 H 0.08 2.81 7.23 -2.39 -0.02 2.79 16 28 H 0.09 3.35 7.82 -2.39 -0.02 3.33 16 29 H 0.39 9.45 7.17 -74.06 -0.53 8.92 16 30 H 0.15 3.34 6.59 -2.91 -0.02 3.32 16 31 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.16 3.69 6.63 -2.91 -0.02 3.67 16 34 H 0.10 3.87 8.09 -2.38 -0.02 3.85 16 35 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -60.24 303.05 -1.27 -61.50 By element: Atomic # 1 Polarization: 40.72 SS G_CDS: 0.13 Total: 40.85 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 4.78 Total: 17.67 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -4.81 Total: -85.41 kcal Atomic # 8 Polarization: -70.73 SS G_CDS: -3.40 Total: -74.13 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.50 kcal Total: -60.24 -1.27 -61.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321916410.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.831 kcal (2) G-P(sol) polarization free energy of solvation -60.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds