Wall clock time and date at job start Tue Mar 31 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99675 * 2 1 4 4 S 1.65593 * 119.99842 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.40369 * 342.10268 * 4 2 1 6 6 O 1.42101 * 106.40010 * 209.18429 * 4 2 1 7 7 N 1.65606 * 107.21765 * 95.64672 * 4 2 1 8 8 C 1.36940 * 119.99617 * 275.55734 * 7 4 2 9 9 H 1.07999 * 120.00446 * 324.66074 * 8 7 4 10 10 C 1.38813 * 119.99542 * 144.65088 * 8 7 4 11 11 N 1.31615 * 120.00221 * 352.87556 * 10 8 7 12 12 Si 1.86802 * 119.99734 * 172.87201 * 10 8 7 13 13 H 1.48495 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47040 * 120.00537 * 12 10 8 15 15 H 1.48505 * 109.47010 * 240.00021 * 12 10 8 16 16 C 1.46497 * 120.00117 * 95.55884 * 7 4 2 17 17 C 1.53005 * 109.46755 * 114.37527 * 16 7 4 18 18 C 1.53001 * 112.99947 * 297.01288 * 17 16 7 19 19 C 1.54030 * 113.92535 * 68.94589 * 17 16 7 20 20 O 1.44181 * 85.51776 * 136.81444 * 19 17 16 21 21 C 1.44173 * 93.33775 * 335.80616 * 20 19 17 22 22 H 1.08999 * 109.47288 * 240.00094 * 1 2 3 23 23 H 1.09008 * 109.46985 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47042 * 120.00068 * 1 2 3 25 25 H 1.08999 * 109.47122 * 274.55975 * 3 2 1 26 26 H 1.09000 * 109.47605 * 34.55970 * 3 2 1 27 27 H 1.09006 * 109.46717 * 154.56447 * 3 2 1 28 28 H 0.97002 * 120.00377 * 184.85880 * 11 10 8 29 29 H 1.09001 * 109.47031 * 354.37981 * 16 7 4 30 30 H 1.08998 * 109.47357 * 234.37349 * 16 7 4 31 31 H 1.08999 * 109.46754 * 293.45014 * 18 17 16 32 32 H 1.08995 * 109.47440 * 53.45486 * 18 17 16 33 33 H 1.09003 * 109.46599 * 173.46171 * 18 17 16 34 34 H 1.09007 * 113.86830 * 250.96059 * 19 17 16 35 35 H 1.09005 * 113.86526 * 22.66660 * 19 17 16 36 36 H 1.09006 * 113.86231 * 270.04308 * 21 20 19 37 37 H 1.09002 * 113.98363 * 138.35493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3702 -2.4300 0.4200 6 8 3.5243 -1.1862 0.6653 7 7 2.6729 -1.7815 -1.5734 8 6 1.7606 -2.4158 -2.3738 9 1 1.1038 -3.1644 -1.9560 10 6 1.6800 -2.0964 -3.7223 11 7 2.3785 -1.0898 -4.2031 12 14 0.5804 -3.0955 -4.8546 13 1 -0.0935 -4.1640 -4.0741 14 1 -0.4426 -2.2066 -5.4619 15 1 1.4026 -3.7095 -5.9281 16 6 3.9847 -1.4103 -2.1094 17 6 4.7731 -2.6765 -2.4504 18 6 5.0682 -3.5449 -1.2258 19 6 4.2061 -3.4619 -3.6479 20 8 5.5796 -3.5968 -4.0650 21 6 6.0021 -2.4223 -3.3435 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 2.3084 1.6243 -1.0244 26 1 1.6462 2.0066 0.5829 27 1 3.1829 1.1194 0.4414 28 1 2.2691 -0.8220 -5.1290 29 1 4.5311 -0.8317 -1.3645 30 1 3.8529 -0.8108 -3.0101 31 1 5.7508 -3.0156 -0.5610 32 1 4.1384 -3.7569 -0.6981 33 1 5.5260 -4.4809 -1.5460 34 1 3.7340 -4.4052 -3.3730 35 1 3.5975 -2.8593 -4.3222 36 1 5.9421 -1.5022 -3.9249 37 1 6.9546 -2.5387 -2.8264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323879999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:13 Heat of formation + Delta-G solvation = -68.886429 kcal Electronic energy + Delta-G solvation = -22260.562827 eV Core-core repulsion = 18974.142291 eV Total energy + Delta-G solvation = -3286.420536 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.86451 -36.11412 -35.72707 -35.21537 -34.65246 -32.05806 -30.60433 -27.45306 -26.44250 -25.59589 -25.24385 -23.83558 -22.91834 -18.59588 -18.17440 -17.34748 -16.69789 -16.38715 -15.29854 -15.14146 -15.06185 -14.74312 -14.59439 -13.85500 -13.70748 -13.17334 -12.78592 -12.53101 -12.11974 -12.05924 -11.86149 -11.71477 -11.57260 -11.43394 -11.18447 -11.07655 -10.98891 -10.88151 -10.78326 -10.64332 -10.36000 -10.18891 -9.74815 -9.45487 -9.34471 -8.64412 -8.26286 -7.78914 -6.35154 -4.17761 1.79280 3.08790 3.18379 3.22411 3.89024 4.18227 4.53450 4.67440 4.78235 5.19221 5.44334 5.48643 5.64962 5.83749 5.92418 5.94753 5.99797 6.13835 6.23069 6.24475 6.27536 6.34428 6.38108 6.50901 6.62962 6.67714 6.73021 6.91776 6.98278 7.16678 7.20319 7.26530 7.34693 7.72567 8.36823 8.78469 9.22626 10.50422 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.010615 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.207668 B = 2637.168859 C = 3564.631522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -1.021 6.021 3 C 0.095 3.905 4 S 2.701 3.299 5 O -0.998 6.998 6 O -1.017 7.017 7 N -0.830 5.830 8 C -0.268 4.268 9 H 0.101 0.899 10 C 0.043 3.957 11 N -0.856 5.856 12 Si 0.904 3.096 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.275 1.275 16 C 0.119 3.881 17 C -0.120 4.120 18 C -0.123 4.123 19 C 0.051 3.949 20 O -0.403 6.403 21 C 0.046 3.954 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.271 0.729 29 H 0.054 0.946 30 H 0.126 0.874 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.670 3.252 1.213 3.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.857 5.857 3 C -0.052 4.052 4 S 2.721 3.279 5 O -0.982 6.982 6 O -1.001 7.001 7 N -0.660 5.660 8 C -0.408 4.408 9 H 0.119 0.881 10 C -0.164 4.164 11 N -0.498 5.498 12 Si 0.730 3.270 13 H -0.188 1.188 14 H -0.204 1.204 15 H -0.200 1.200 16 C -0.008 4.008 17 C -0.123 4.123 18 C -0.180 4.180 19 C -0.025 4.025 20 O -0.323 6.323 21 C -0.032 4.032 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.095 0.905 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.068 2.689 1.864 3.442 hybrid contribution -0.851 0.087 -0.732 1.126 sum 0.217 2.777 1.132 3.006 Atomic orbital electron populations 1.21266 0.80335 1.01394 1.01274 1.58530 1.14239 1.22482 1.90415 1.21345 0.96653 0.86181 1.01011 1.06335 0.72193 0.73269 0.76104 1.93431 1.64685 1.57657 1.82472 1.93408 1.45403 1.85918 1.75345 1.53290 1.17795 1.65071 1.29852 1.19499 1.15226 1.15626 0.90424 0.88109 1.25560 0.96314 0.96087 0.98438 1.69597 1.38157 1.25686 1.16351 0.86205 0.80231 0.80166 0.80390 1.18752 1.20396 1.20043 1.21716 0.81514 0.95340 1.02195 1.23614 0.94740 0.97980 0.95966 1.21493 1.01344 0.98673 0.96525 1.24495 0.83464 0.99815 0.94771 1.89503 1.24104 1.44022 1.74669 1.23888 0.97432 0.89545 0.92369 0.93358 0.92203 0.92157 0.93335 0.92822 0.91023 0.91770 0.92797 0.85684 0.92579 0.92587 0.93001 0.90844 0.86932 0.90528 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.23 59.85 0.61 2.41 16 2 N -1.02 -19.97 3.64 -129.19 -0.47 -20.45 16 3 C 0.09 1.57 10.64 59.85 0.64 2.20 16 4 S 2.70 61.43 6.05 -107.50 -0.65 60.78 16 5 O -1.00 -25.10 16.26 -57.17 -0.93 -26.03 16 6 O -1.02 -24.07 15.29 -57.17 -0.87 -24.94 16 7 N -0.83 -18.88 2.57 -59.91 -0.15 -19.03 16 8 C -0.27 -6.31 8.06 -15.06 -0.12 -6.43 16 9 H 0.10 2.47 7.39 -52.49 -0.39 2.09 16 10 C 0.04 0.98 3.02 -17.43 -0.05 0.92 16 11 N -0.86 -19.44 9.36 55.49 0.52 -18.92 16 12 Si 0.90 18.33 29.29 -169.99 -4.98 13.35 16 13 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 14 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 15 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 16 C 0.12 2.55 4.74 -4.04 -0.02 2.53 16 17 C -0.12 -2.43 1.07 -153.43 -0.16 -2.60 16 18 C -0.12 -2.40 9.06 37.16 0.34 -2.06 16 19 C 0.05 1.07 6.52 37.61 0.25 1.31 16 20 O -0.40 -8.36 12.37 -35.23 -0.44 -8.80 16 21 C 0.05 0.83 8.36 37.61 0.31 1.14 16 22 H 0.05 0.81 8.05 -51.93 -0.42 0.39 16 23 H 0.06 0.84 7.86 -51.92 -0.41 0.43 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.73 8.02 -51.93 -0.42 0.32 16 27 H 0.07 1.21 7.00 -51.93 -0.36 0.84 16 28 H 0.27 5.91 8.32 -40.82 -0.34 5.57 16 29 H 0.05 1.12 6.87 -51.93 -0.36 0.76 16 30 H 0.13 2.80 5.26 -51.93 -0.27 2.52 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.17 7.77 -51.93 -0.40 0.77 16 33 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 34 H 0.07 1.54 8.10 -51.92 -0.42 1.12 16 35 H 0.11 2.52 4.28 -51.93 -0.22 2.29 16 36 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 37 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 305.44 15.07 4.60 4.60 Total: -1.00 -27.55 305.44 -6.92 -34.47 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -5.33 Total: 5.54 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 1.79 Total: -0.58 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.11 Total: -58.40 kcal Atomic # 8 Polarization: -57.53 SS G_CDS: -2.24 Total: -59.77 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -4.98 Total: 13.35 kcal Atomic # 16 Polarization: 61.43 SS G_CDS: -0.65 Total: 60.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -27.55 -6.92 -34.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323879999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.419 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds