Wall clock time and date at job start Tue Mar 31 2020 01:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99675 * 2 1 4 4 S 1.65593 * 119.99842 * 179.97438 * 2 1 3 5 5 O 1.42098 * 106.40369 * 342.10268 * 4 2 1 6 6 O 1.42101 * 106.40010 * 209.18429 * 4 2 1 7 7 N 1.65606 * 107.21765 * 95.64672 * 4 2 1 8 8 C 1.36940 * 119.99617 * 275.55734 * 7 4 2 9 9 H 1.07999 * 120.00446 * 324.66074 * 8 7 4 10 10 C 1.38813 * 119.99542 * 144.65088 * 8 7 4 11 11 N 1.31615 * 120.00221 * 352.87556 * 10 8 7 12 12 Si 1.86802 * 119.99734 * 172.87201 * 10 8 7 13 13 H 1.48495 * 109.47252 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.47040 * 120.00537 * 12 10 8 15 15 H 1.48505 * 109.47010 * 240.00021 * 12 10 8 16 16 C 1.46497 * 120.00117 * 95.55884 * 7 4 2 17 17 C 1.53005 * 109.46755 * 114.37527 * 16 7 4 18 18 C 1.53001 * 112.99947 * 297.01288 * 17 16 7 19 19 C 1.54030 * 113.92535 * 68.94589 * 17 16 7 20 20 O 1.44181 * 85.51776 * 136.81444 * 19 17 16 21 21 C 1.44173 * 93.33775 * 335.80616 * 20 19 17 22 22 H 1.08999 * 109.47288 * 240.00094 * 1 2 3 23 23 H 1.09008 * 109.46985 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47042 * 120.00068 * 1 2 3 25 25 H 1.08999 * 109.47122 * 274.55975 * 3 2 1 26 26 H 1.09000 * 109.47605 * 34.55970 * 3 2 1 27 27 H 1.09006 * 109.46717 * 154.56447 * 3 2 1 28 28 H 0.97002 * 120.00377 * 184.85880 * 11 10 8 29 29 H 1.09001 * 109.47031 * 354.37981 * 16 7 4 30 30 H 1.08998 * 109.47357 * 234.37349 * 16 7 4 31 31 H 1.08999 * 109.46754 * 293.45014 * 18 17 16 32 32 H 1.08995 * 109.47440 * 53.45486 * 18 17 16 33 33 H 1.09003 * 109.46599 * 173.46171 * 18 17 16 34 34 H 1.09007 * 113.86830 * 250.96059 * 19 17 16 35 35 H 1.09005 * 113.86526 * 22.66660 * 19 17 16 36 36 H 1.09006 * 113.86231 * 270.04308 * 21 20 19 37 37 H 1.09002 * 113.98363 * 138.35493 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3702 -2.4300 0.4200 6 8 3.5243 -1.1862 0.6653 7 7 2.6729 -1.7815 -1.5734 8 6 1.7606 -2.4158 -2.3738 9 1 1.1038 -3.1644 -1.9560 10 6 1.6800 -2.0964 -3.7223 11 7 2.3785 -1.0898 -4.2031 12 14 0.5804 -3.0955 -4.8546 13 1 -0.0935 -4.1640 -4.0741 14 1 -0.4426 -2.2066 -5.4619 15 1 1.4026 -3.7095 -5.9281 16 6 3.9847 -1.4103 -2.1094 17 6 4.7731 -2.6765 -2.4504 18 6 5.0682 -3.5449 -1.2258 19 6 4.2061 -3.4619 -3.6479 20 8 5.5796 -3.5968 -4.0650 21 6 6.0021 -2.4223 -3.3435 22 1 -0.3634 -0.5138 0.8900 23 1 -0.3633 1.0277 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 2.3084 1.6243 -1.0244 26 1 1.6462 2.0066 0.5829 27 1 3.1829 1.1194 0.4414 28 1 2.2691 -0.8220 -5.1290 29 1 4.5311 -0.8317 -1.3645 30 1 3.8529 -0.8108 -3.0101 31 1 5.7508 -3.0156 -0.5610 32 1 4.1384 -3.7569 -0.6981 33 1 5.5260 -4.4809 -1.5460 34 1 3.7340 -4.4052 -3.3730 35 1 3.5975 -2.8593 -4.3222 36 1 5.9421 -1.5022 -3.9249 37 1 6.9546 -2.5387 -2.8264 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323879999.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:13 Heat of formation + Delta-G solvation = -88.432649 kcal Electronic energy + Delta-G solvation = -22261.410415 eV Core-core repulsion = 18974.142291 eV Total energy + Delta-G solvation = -3287.268123 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 278.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45563 -37.98419 -37.43856 -36.72107 -36.52042 -33.76329 -32.27310 -28.82408 -28.08103 -27.17457 -26.89440 -25.32914 -24.59903 -20.33257 -19.81109 -19.01625 -18.41438 -18.13563 -16.95730 -16.76212 -16.67748 -16.35070 -16.22696 -15.40555 -15.24344 -14.88146 -14.37628 -14.07173 -13.78889 -13.51266 -13.44873 -13.34202 -13.12279 -13.06269 -12.95911 -12.75271 -12.66863 -12.58852 -12.45651 -12.23986 -12.03696 -11.86976 -11.33737 -11.10859 -11.03680 -10.26640 -9.78940 -9.50259 -8.08601 -5.97385 0.05077 1.45599 1.52566 1.59765 2.23434 2.52175 2.88790 3.00581 3.04736 3.59933 3.75967 4.07776 4.12892 4.30357 4.48832 4.57724 4.61556 4.67503 4.70710 4.78342 4.80693 4.91694 4.96336 4.98856 5.06353 5.08727 5.22158 5.33608 5.39395 5.49560 5.52115 5.52623 5.86581 6.03072 6.59254 7.01227 7.46060 8.76502 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.016651 B = 0.010615 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.207668 B = 2637.168859 C = 3564.631522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.026 6.026 3 C 0.090 3.910 4 S 2.714 3.286 5 O -1.027 7.027 6 O -1.029 7.029 7 N -0.837 5.837 8 C -0.288 4.288 9 H 0.082 0.918 10 C 0.028 3.972 11 N -0.865 5.865 12 Si 0.946 3.054 13 H -0.269 1.269 14 H -0.274 1.274 15 H -0.274 1.274 16 C 0.122 3.878 17 C -0.127 4.127 18 C -0.119 4.119 19 C 0.049 3.951 20 O -0.415 6.415 21 C 0.053 3.947 22 H 0.049 0.951 23 H 0.097 0.903 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.274 0.726 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 4.289 1.042 4.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.864 5.864 3 C -0.056 4.056 4 S 2.734 3.266 5 O -1.012 7.012 6 O -1.013 7.013 7 N -0.668 5.668 8 C -0.426 4.426 9 H 0.100 0.900 10 C -0.178 4.178 11 N -0.506 5.506 12 Si 0.771 3.229 13 H -0.194 1.194 14 H -0.199 1.199 15 H -0.199 1.199 16 C -0.005 4.005 17 C -0.129 4.129 18 C -0.177 4.177 19 C -0.027 4.027 20 O -0.334 6.334 21 C -0.024 4.024 22 H 0.068 0.932 23 H 0.116 0.884 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.107 0.893 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.104 0.896 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.388 3.730 1.674 4.317 hybrid contribution -0.943 -0.163 -0.620 1.140 sum 0.445 3.566 1.054 3.745 Atomic orbital electron populations 1.21429 0.78894 1.03736 1.00730 1.58246 1.15354 1.22629 1.90218 1.21544 0.96679 0.85454 1.01902 1.05473 0.71795 0.73470 0.75867 1.93387 1.65478 1.59322 1.83021 1.93384 1.46014 1.86232 1.75648 1.53183 1.18331 1.65840 1.29429 1.19319 1.15870 1.16360 0.91099 0.90023 1.25850 0.96817 0.96511 0.98619 1.69640 1.38316 1.25997 1.16629 0.85587 0.79150 0.79175 0.79028 1.19353 1.19902 1.19943 1.21711 0.81167 0.95885 1.01737 1.23675 0.95705 0.97470 0.96082 1.21461 1.00528 0.99391 0.96292 1.24373 0.83703 0.99485 0.95149 1.89485 1.23682 1.45171 1.75099 1.24050 0.97749 0.89144 0.91462 0.93234 0.88409 0.93516 0.93033 0.89301 0.91566 0.91493 0.92516 0.86466 0.91503 0.94833 0.91720 0.91463 0.88044 0.89619 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.22 10.23 127.77 1.31 4.53 16 2 N -1.03 -38.73 3.64 -562.66 -2.05 -40.78 16 3 C 0.09 2.76 10.64 127.77 1.36 4.12 16 4 S 2.71 122.99 6.05 -56.49 -0.34 122.65 16 5 O -1.03 -52.27 16.26 -128.00 -2.08 -54.35 16 6 O -1.03 -48.15 15.29 -128.00 -1.96 -50.10 16 7 N -0.84 -38.10 2.57 -343.45 -0.88 -38.98 16 8 C -0.29 -13.69 8.06 84.03 0.68 -13.01 16 9 H 0.08 4.14 7.39 -2.91 -0.02 4.11 16 10 C 0.03 1.27 3.02 84.86 0.26 1.53 16 11 N -0.86 -38.71 9.36 21.65 0.20 -38.51 16 12 Si 0.95 37.32 29.29 68.60 2.01 39.33 16 13 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 14 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 16 C 0.12 5.12 4.74 86.38 0.41 5.53 16 17 C -0.13 -5.00 1.07 -51.48 -0.06 -5.05 16 18 C -0.12 -4.55 9.06 71.98 0.65 -3.90 16 19 C 0.05 2.06 6.52 72.27 0.47 2.53 16 20 O -0.41 -16.57 12.37 -148.98 -1.84 -18.41 16 21 C 0.05 1.82 8.36 72.27 0.60 2.42 16 22 H 0.05 1.60 8.05 -2.39 -0.02 1.58 16 23 H 0.10 2.45 7.86 -2.38 -0.02 2.43 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 2.11 8.02 -2.39 -0.02 2.09 16 27 H 0.07 2.11 7.00 -2.38 -0.02 2.09 16 28 H 0.27 11.70 8.32 -92.71 -0.77 10.93 16 29 H 0.06 2.31 6.87 -2.39 -0.02 2.29 16 30 H 0.12 5.16 5.26 -2.39 -0.01 5.15 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.03 1.40 7.77 -2.39 -0.02 1.38 16 33 H 0.06 2.25 8.07 -2.39 -0.02 2.23 16 34 H 0.07 2.84 8.10 -2.38 -0.02 2.82 16 35 H 0.10 4.50 4.28 -2.38 -0.01 4.49 16 36 H 0.09 2.78 8.09 -2.38 -0.02 2.76 16 37 H 0.10 2.97 8.10 -2.39 -0.02 2.95 16 Total: -1.00 -57.39 305.44 -0.20 -57.59 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.06 Total: 22.87 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 5.68 Total: -1.31 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -2.73 Total: -118.27 kcal Atomic # 8 Polarization: -116.99 SS G_CDS: -5.88 Total: -122.87 kcal Atomic # 14 Polarization: 37.32 SS G_CDS: 2.01 Total: 39.33 kcal Atomic # 16 Polarization: 122.99 SS G_CDS: -0.34 Total: 122.65 kcal Total: -57.39 -0.20 -57.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323879999.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.838 kcal (2) G-P(sol) polarization free energy of solvation -57.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds