Wall clock time and date at job start Mon Mar 30 2020 23:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47153 * 300.00250 * 3 2 1 6 6 H 1.48504 * 109.47149 * 60.00269 * 3 2 1 7 7 C 1.38954 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99705 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00075 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99842 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47391 * 179.97438 * 12 10 9 14 14 C 1.34769 * 120.00103 * 179.97438 * 13 12 10 15 15 O 1.21549 * 120.00609 * 0.02562 * 14 13 12 16 16 C 1.47858 * 119.99939 * 180.02562 * 14 13 12 17 17 C 1.39593 * 120.13974 * 359.97438 * 16 14 13 18 18 C 1.37939 * 119.85045 * 180.02562 * 17 16 14 19 19 C 1.38387 * 120.14196 * 359.72675 * 18 17 16 20 20 C 1.38336 * 120.29069 * 0.54696 * 19 18 17 21 21 C 1.50699 * 119.92430 * 179.72793 * 20 19 18 22 22 O 1.42903 * 109.47152 * 269.73010 * 21 20 19 23 23 C 1.37977 * 120.14682 * 359.45167 * 20 19 18 24 24 H 0.96998 * 119.99373 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00150 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.47189 * 60.00190 * 12 10 9 27 27 H 1.09002 * 109.47399 * 300.00333 * 12 10 9 28 28 H 0.96998 * 119.99417 * 0.02562 * 13 12 10 29 29 H 1.07997 * 120.07666 * 359.97438 * 17 16 14 30 30 H 1.07998 * 119.92703 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.84933 * 180.30018 * 19 18 17 32 32 H 1.08997 * 109.47198 * 149.72688 * 21 20 19 33 33 H 1.09008 * 109.47393 * 29.72404 * 21 20 19 34 34 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.07384 * 180.25010 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1956 -5.9765 -0.0007 14 6 1.7463 -7.2471 0.0002 15 8 0.5513 -7.4693 0.0011 16 6 2.7071 -8.3710 0.0000 17 6 4.0801 -8.1193 -0.0016 18 6 4.9711 -9.1723 -0.0023 19 6 4.5065 -10.4758 0.0043 20 6 3.1470 -10.7320 0.0002 21 6 2.6501 -12.1547 0.0013 22 8 2.4916 -12.6049 -1.3457 23 6 2.2451 -9.6878 0.0010 24 1 -0.4849 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6167 -4.9209 -0.8898 27 1 0.6173 -4.9205 0.8903 28 1 3.1493 -5.7993 -0.0011 29 1 4.4440 -7.1025 -0.0031 30 1 6.0337 -8.9791 -0.0031 31 1 5.2083 -11.2967 0.0087 32 1 1.6907 -12.2041 0.5162 33 1 3.3711 -12.7911 0.5145 34 1 2.1732 -13.5149 -1.4214 35 1 1.1841 -9.8892 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324390914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:28 Heat of formation + Delta-G solvation = -100.151346 kcal Electronic energy + Delta-G solvation = -20126.760101 eV Core-core repulsion = 16703.539865 eV Total energy + Delta-G solvation = -3423.220235 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.25430 -38.86862 -37.99937 -36.77808 -34.53504 -33.76545 -32.03457 -31.41168 -31.25290 -27.83349 -26.17115 -24.80495 -23.33799 -21.94936 -20.04519 -19.63367 -18.25040 -17.78150 -17.65448 -16.42144 -16.07529 -15.52714 -15.29776 -15.08426 -15.03764 -14.43147 -14.00663 -13.92339 -13.89751 -13.77866 -13.34341 -12.82149 -12.40262 -12.18442 -11.92321 -11.75894 -11.65120 -11.20042 -11.15478 -10.42712 -10.42021 -10.34072 -9.85088 -9.66569 -9.15683 -9.11577 -8.79167 -8.66126 -8.12054 -6.53160 -3.95185 0.73212 1.11962 2.85256 3.09253 3.20870 3.25461 3.32390 3.67389 3.73968 4.09822 4.16025 4.57005 4.63926 4.72696 4.82768 4.93087 4.95976 5.09421 5.15463 5.16691 5.38357 5.61913 5.78031 5.88530 5.93677 6.04372 6.17012 6.19882 6.28043 6.59855 6.69106 7.27243 7.44800 7.75353 7.90284 8.36813 8.43706 9.02850 9.37256 9.84828 10.63785 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045985 B = 0.002865 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.753940 B = 9771.628151 C =10282.430200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.701 5.701 14 C 0.555 3.445 15 O -0.546 6.546 16 C -0.130 4.130 17 C -0.077 4.077 18 C -0.129 4.129 19 C -0.078 4.078 20 C -0.108 4.108 21 C 0.119 3.881 22 O -0.567 6.567 23 C -0.040 4.040 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.410 0.590 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.380 0.620 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 -21.060 0.979 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.355 5.355 14 C 0.342 3.658 15 O -0.425 6.425 16 C -0.133 4.133 17 C -0.096 4.096 18 C -0.147 4.147 19 C -0.096 4.096 20 C -0.108 4.108 21 C 0.042 3.958 22 O -0.373 6.373 23 C -0.059 4.059 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.250 0.750 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.144 0.856 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.227 0.773 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.396 -20.374 0.857 21.094 hybrid contribution 0.020 0.488 0.150 0.511 sum 5.416 -19.886 1.007 20.635 Atomic orbital electron populations 1.69627 1.06028 1.28459 1.49312 1.25341 0.95677 0.99975 0.96767 0.85749 0.79676 0.80773 0.77842 1.19121 1.20594 1.20593 1.19784 0.93496 0.81958 1.48166 0.87592 1.41801 1.09514 1.04473 1.62502 1.19716 0.88280 0.84973 0.85674 1.90490 1.13707 1.86821 1.57463 1.20994 0.91842 0.85631 1.03471 1.45625 1.11735 1.04526 1.73633 1.18190 0.88076 0.82701 0.76854 1.90753 1.16118 1.84917 1.50684 1.19961 0.93521 0.93810 1.06037 1.21526 0.92156 1.00126 0.95762 1.21113 1.00082 0.92209 1.01321 1.21225 0.94758 0.97078 0.96533 1.19545 0.93539 0.94326 1.03390 1.20956 0.99618 0.91371 0.83894 1.86589 1.89936 1.34463 1.26308 1.21139 1.00433 0.90496 0.93839 0.91609 0.76997 0.89608 0.89607 0.75027 0.84851 0.85044 0.85617 0.92442 0.92605 0.77292 0.84550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.87 13.05 55.50 0.72 -23.15 16 2 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 3 Si 0.93 20.49 29.55 -169.99 -5.02 15.47 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.75 16 11 O -0.60 -15.24 15.24 5.55 0.08 -15.16 16 12 C 0.11 2.03 6.15 -5.19 -0.03 1.99 16 13 N -0.70 -12.12 5.48 -62.43 -0.34 -12.47 16 14 C 0.55 9.42 7.77 -12.33 -0.10 9.33 16 15 O -0.55 -10.68 16.35 5.32 0.09 -10.59 16 16 C -0.13 -1.84 5.87 -104.97 -0.62 -2.46 16 17 C -0.08 -0.93 9.54 -39.19 -0.37 -1.30 16 18 C -0.13 -1.29 10.03 -39.64 -0.40 -1.69 16 19 C -0.08 -0.75 9.69 -39.49 -0.38 -1.13 16 20 C -0.11 -1.16 5.50 -104.68 -0.58 -1.74 16 21 C 0.12 0.95 7.17 36.01 0.26 1.21 16 22 O -0.57 -5.03 13.64 -35.23 -0.48 -5.51 16 23 C -0.04 -0.52 9.24 -39.19 -0.36 -0.88 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 25 H 0.40 9.45 7.90 -40.82 -0.32 9.12 16 26 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 28 H 0.41 6.86 5.47 -40.82 -0.22 6.63 16 29 H 0.13 1.51 6.41 -52.49 -0.34 1.17 16 30 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 31 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 32 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.06 0.32 8.08 -51.92 -0.42 -0.10 16 34 H 0.38 1.40 9.12 45.56 0.42 1.81 16 35 H 0.14 1.78 7.65 -52.49 -0.40 1.37 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -33.35 314.51 -6.08 -39.44 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -2.91 Total: 15.63 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.91 Total: 5.24 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.32 Total: -49.27 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.31 Total: -31.25 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.35 -6.08 -39.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324390914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.715 kcal (2) G-P(sol) polarization free energy of solvation -33.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds