Wall clock time and date at job start Mon Mar 30 2020 23:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86799 * 120.00164 * 2 1 4 4 H 1.48497 * 109.47198 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47153 * 300.00250 * 3 2 1 6 6 H 1.48504 * 109.47149 * 60.00269 * 3 2 1 7 7 C 1.38954 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99807 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99705 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00075 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99842 * 179.97438 * 10 9 7 13 13 N 1.46500 * 109.47391 * 179.97438 * 12 10 9 14 14 C 1.34769 * 120.00103 * 179.97438 * 13 12 10 15 15 O 1.21549 * 120.00609 * 0.02562 * 14 13 12 16 16 C 1.47858 * 119.99939 * 180.02562 * 14 13 12 17 17 C 1.39593 * 120.13974 * 359.97438 * 16 14 13 18 18 C 1.37939 * 119.85045 * 180.02562 * 17 16 14 19 19 C 1.38387 * 120.14196 * 359.72675 * 18 17 16 20 20 C 1.38336 * 120.29069 * 0.54696 * 19 18 17 21 21 C 1.50699 * 119.92430 * 179.72793 * 20 19 18 22 22 O 1.42903 * 109.47152 * 269.73010 * 21 20 19 23 23 C 1.37977 * 120.14682 * 359.45167 * 20 19 18 24 24 H 0.96998 * 119.99373 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00150 * 359.97438 * 9 7 2 26 26 H 1.09007 * 109.47189 * 60.00190 * 12 10 9 27 27 H 1.09002 * 109.47399 * 300.00333 * 12 10 9 28 28 H 0.96998 * 119.99417 * 0.02562 * 13 12 10 29 29 H 1.07997 * 120.07666 * 359.97438 * 17 16 14 30 30 H 1.07998 * 119.92703 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.84933 * 180.30018 * 19 18 17 32 32 H 1.08997 * 109.47198 * 149.72688 * 21 20 19 33 33 H 1.09008 * 109.47393 * 29.72404 * 21 20 19 34 34 H 0.96700 * 114.00311 * 180.02562 * 22 21 20 35 35 H 1.07999 * 120.07384 * 180.25010 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8629 0.0000 13 7 2.1956 -5.9765 -0.0007 14 6 1.7463 -7.2471 0.0002 15 8 0.5513 -7.4693 0.0011 16 6 2.7071 -8.3710 0.0000 17 6 4.0801 -8.1193 -0.0016 18 6 4.9711 -9.1723 -0.0023 19 6 4.5065 -10.4758 0.0043 20 6 3.1470 -10.7320 0.0002 21 6 2.6501 -12.1547 0.0013 22 8 2.4916 -12.6049 -1.3457 23 6 2.2451 -9.6878 0.0010 24 1 -0.4849 0.8401 0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6167 -4.9209 -0.8898 27 1 0.6173 -4.9205 0.8903 28 1 3.1493 -5.7993 -0.0011 29 1 4.4440 -7.1025 -0.0031 30 1 6.0337 -8.9791 -0.0031 31 1 5.2083 -11.2967 0.0087 32 1 1.6907 -12.2041 0.5162 33 1 3.3711 -12.7911 0.5145 34 1 2.1732 -13.5149 -1.4214 35 1 1.1841 -9.8892 0.0019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324390914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:49:28 Heat of formation + Delta-G solvation = -126.892348 kcal Electronic energy + Delta-G solvation = -20127.919678 eV Core-core repulsion = 16703.539865 eV Total energy + Delta-G solvation = -3424.379812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44710 -40.29663 -39.45778 -37.45435 -36.30973 -35.44400 -33.42783 -32.88004 -32.19190 -29.39006 -26.96100 -26.55927 -24.53822 -22.80809 -21.43859 -21.26770 -20.12177 -19.00457 -18.35038 -17.70106 -17.24406 -16.99719 -16.81317 -16.42448 -16.16772 -15.95225 -15.55697 -15.48977 -14.82985 -14.65281 -14.50611 -14.02473 -13.87010 -13.56866 -13.48022 -13.07796 -12.92394 -12.62326 -12.46244 -12.11590 -11.97596 -11.59864 -11.22270 -10.95327 -10.59894 -10.37839 -10.12019 -9.97360 -9.93010 -8.52891 -6.03245 -0.22309 0.26341 1.34013 1.42394 1.56500 1.72128 1.87978 1.91757 2.29829 2.73424 3.06884 3.14252 3.50894 3.58620 3.85808 4.01164 4.10272 4.18087 4.25472 4.33408 4.37085 4.37585 4.53152 4.62301 4.81949 4.96464 5.14866 5.27074 5.35347 5.37142 5.46379 5.85090 5.89581 6.38346 6.46453 6.93282 7.00463 7.02541 7.41178 7.91031 8.64305 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.045985 B = 0.002865 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.753940 B = 9771.628151 C =10282.430200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.623 6.623 12 C 0.119 3.881 13 N -0.702 5.702 14 C 0.556 3.444 15 O -0.578 6.578 16 C -0.155 4.155 17 C -0.085 4.085 18 C -0.125 4.125 19 C -0.069 4.069 20 C -0.114 4.114 21 C 0.118 3.882 22 O -0.591 6.591 23 C -0.055 4.055 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.414 0.586 29 H 0.135 0.865 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 -22.340 1.089 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.356 5.356 14 C 0.345 3.655 15 O -0.460 6.460 16 C -0.158 4.158 17 C -0.103 4.103 18 C -0.143 4.143 19 C -0.087 4.087 20 C -0.114 4.114 21 C 0.041 3.959 22 O -0.401 6.401 23 C -0.074 4.074 24 H 0.090 0.910 25 H 0.233 0.767 26 H 0.114 0.886 27 H 0.115 0.885 28 H 0.253 0.747 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.252 0.748 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.792 -21.687 0.966 22.746 hybrid contribution -0.382 0.750 0.108 0.848 sum 6.411 -20.937 1.074 21.923 Atomic orbital electron populations 1.69691 1.07052 1.29633 1.49257 1.26160 0.96551 1.02758 0.95725 0.84793 0.78141 0.76609 0.78324 1.19355 1.19634 1.19586 1.19786 0.92993 0.83456 1.50333 0.89479 1.41845 1.09622 1.04598 1.63267 1.20335 0.88109 0.85821 0.83734 1.90465 1.15076 1.87497 1.58091 1.20836 0.91677 0.83835 1.04480 1.45618 1.11585 1.04409 1.73945 1.18670 0.88235 0.82988 0.75619 1.90721 1.17615 1.85317 1.52318 1.19816 0.93837 0.93082 1.09032 1.21634 0.91560 1.01091 0.96057 1.21488 1.01231 0.91785 0.99794 1.21673 0.94800 0.97943 0.94241 1.19937 0.93910 0.95252 1.02311 1.21041 1.00807 0.90116 0.83919 1.86518 1.90265 1.36480 1.26806 1.21194 1.00522 0.90821 0.94876 0.91029 0.76671 0.88626 0.88488 0.74667 0.84739 0.82056 0.82217 0.91862 0.89636 0.74838 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.84 13.05 21.67 0.28 -48.56 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 3 Si 1.00 41.76 29.55 68.60 2.03 43.79 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.34 -18.58 9.68 84.04 0.81 -17.76 16 8 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 9 N -0.56 -28.23 5.29 -306.99 -1.62 -29.85 16 10 C 0.43 20.23 7.85 87.66 0.69 20.92 16 11 O -0.62 -32.31 15.24 -3.06 -0.05 -32.36 16 12 C 0.12 4.52 6.15 85.63 0.53 5.04 16 13 N -0.70 -24.60 5.48 -469.70 -2.57 -27.18 16 14 C 0.56 19.28 7.77 86.79 0.67 19.96 16 15 O -0.58 -23.25 16.35 -3.87 -0.06 -23.31 16 16 C -0.15 -4.39 5.87 -20.09 -0.12 -4.51 16 17 C -0.08 -1.96 9.54 22.53 0.21 -1.75 16 18 C -0.13 -2.16 10.03 22.23 0.22 -1.94 16 19 C -0.07 -1.10 9.69 22.33 0.22 -0.88 16 20 C -0.11 -2.23 5.50 -19.90 -0.11 -2.34 16 21 C 0.12 1.59 7.17 71.24 0.51 2.10 16 22 O -0.59 -9.17 13.64 -148.98 -2.03 -11.21 16 23 C -0.05 -1.42 9.24 22.52 0.21 -1.21 16 24 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 25 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 26 H 0.10 3.46 8.14 -2.38 -0.02 3.44 16 27 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 28 H 0.41 14.02 5.47 -92.71 -0.51 13.51 16 29 H 0.13 2.99 6.41 -2.91 -0.02 2.97 16 30 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.06 0.76 8.08 -2.39 -0.02 0.74 16 33 H 0.09 0.65 8.08 -2.38 -0.02 0.63 16 34 H 0.40 2.03 9.12 -74.06 -0.68 1.36 16 35 H 0.13 3.39 7.65 -2.91 -0.02 3.37 16 Total: -1.00 -72.06 314.51 -0.46 -72.53 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -0.75 Total: 38.64 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 4.32 Total: 17.51 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -3.91 Total: -105.59 kcal Atomic # 8 Polarization: -64.74 SS G_CDS: -2.14 Total: -66.88 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -72.06 -0.46 -72.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324390914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.365 kcal (2) G-P(sol) polarization free energy of solvation -72.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds