Wall clock time and date at job start Mon Mar 30 2020 23:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 119.99690 * 2 1 4 4 H 1.48502 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47741 * 300.00482 * 3 2 1 6 6 H 1.48504 * 109.47232 * 60.00732 * 3 2 1 7 7 C 1.38948 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99826 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00359 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99435 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00116 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47007 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00217 * 180.02562 * 13 12 10 15 15 O 1.21277 * 119.99809 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00333 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.47149 * 179.97438 * 16 14 13 18 18 C 1.38158 * 120.02768 * 264.99832 * 17 16 14 19 19 C 1.38250 * 120.05410 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11168 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05855 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.02445 * 84.95894 * 17 16 14 23 23 O 1.35901 * 120.05828 * 0.03985 * 22 17 16 24 24 H 0.97000 * 120.00063 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00059 * 0.02562 * 9 7 2 26 26 H 1.08992 * 109.47328 * 60.00108 * 12 10 9 27 27 H 1.08996 * 109.47063 * 299.99783 * 12 10 9 28 28 H 0.97005 * 119.99920 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.46777 * 59.99444 * 16 14 13 30 30 H 1.08996 * 109.46853 * 299.99672 * 16 14 13 31 31 H 1.08004 * 119.97750 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.94133 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.97275 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.03307 * 179.73079 * 21 20 19 35 35 H 0.96701 * 113.99785 * 269.95941 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0004 14 6 1.7467 -7.2472 -0.0013 15 8 0.5543 -7.4688 -0.0022 16 6 2.7260 -8.3926 -0.0011 17 6 1.9725 -9.6977 -0.0015 18 6 1.7167 -10.3488 1.1899 19 6 1.0260 -11.5463 1.1900 20 6 0.5889 -12.0953 -0.0015 21 6 0.8412 -11.4478 -1.1952 22 6 1.5345 -10.2458 -1.1981 23 8 1.7849 -9.6073 -2.3714 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6176 -4.9205 -0.8913 27 1 0.6169 -4.9209 0.8886 28 1 3.1496 -5.7992 0.0000 29 1 3.3520 -8.3351 0.8893 30 1 3.3532 -8.3345 -0.8906 31 1 2.0573 -9.9223 2.1218 32 1 0.8274 -12.0539 2.1224 33 1 0.0492 -13.0307 0.0013 34 1 0.5035 -11.8791 -2.1260 35 1 1.0951 -8.9825 -2.6341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325167262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:20 Heat of formation + Delta-G solvation = -97.809424 kcal Electronic energy + Delta-G solvation = -20384.519420 eV Core-core repulsion = 16961.400738 eV Total energy + Delta-G solvation = -3423.118682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.34619 -39.16428 -38.06271 -36.70180 -34.48333 -33.69110 -32.92209 -31.40946 -30.07559 -28.61973 -26.69662 -24.44983 -22.73328 -21.93705 -20.17689 -19.59802 -18.44046 -18.10613 -17.11302 -16.42294 -16.15070 -15.67650 -15.37209 -15.19136 -15.04142 -14.47052 -14.04793 -13.98160 -13.93666 -13.33575 -13.23641 -12.43528 -12.29082 -12.20641 -12.14547 -11.85100 -11.65980 -11.45609 -11.16225 -10.55856 -10.42993 -10.35093 -9.83973 -9.67549 -8.97953 -8.84248 -8.69753 -8.64015 -8.13134 -6.54292 -3.96383 1.11447 1.19681 2.77591 3.08360 3.20270 3.24831 3.30504 3.60228 3.70740 4.09387 4.20097 4.53147 4.69670 4.84295 4.87804 5.05129 5.10675 5.14387 5.30355 5.37558 5.50339 5.73399 5.82595 5.89491 5.91974 6.03780 6.19987 6.31504 6.37733 6.63234 6.67529 7.43679 7.54895 7.76310 7.89326 8.38607 8.43185 9.01919 9.36212 9.83884 10.62641 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047308 B = 0.002856 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.726762 B = 9801.771152 C = 9814.767844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.427 3.573 11 O -0.597 6.597 12 C 0.109 3.891 13 N -0.707 5.707 14 C 0.514 3.486 15 O -0.547 6.547 16 C -0.101 4.101 17 C -0.086 4.086 18 C -0.092 4.092 19 C -0.130 4.130 20 C -0.107 4.107 21 C -0.146 4.146 22 C 0.121 3.879 23 O -0.500 6.500 24 H 0.274 0.726 25 H 0.396 0.604 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.412 0.588 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -19.502 0.140 19.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.484 6.484 12 C -0.019 4.019 13 N -0.361 5.361 14 C 0.300 3.700 15 O -0.426 6.426 16 C -0.141 4.141 17 C -0.087 4.087 18 C -0.111 4.111 19 C -0.148 4.148 20 C -0.125 4.125 21 C -0.165 4.165 22 C 0.077 3.923 23 O -0.311 6.311 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.250 0.750 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.109 -19.774 0.136 19.805 hybrid contribution -0.300 1.332 -0.021 1.365 sum 0.809 -18.442 0.115 18.460 Atomic orbital electron populations 1.69622 1.06030 1.28461 1.49352 1.25334 0.95672 0.99972 0.96766 0.85753 0.79690 0.80778 0.77849 1.19112 1.20591 1.20592 1.19782 0.93495 0.81976 1.48165 0.87605 1.41811 1.09488 1.04510 1.62573 1.19746 0.88300 0.85001 0.85648 1.90499 1.13700 1.86819 1.57367 1.20945 0.91907 0.85844 1.03170 1.45733 1.11656 1.04603 1.74094 1.20444 0.89577 0.83602 0.76404 1.90696 1.16739 1.84897 1.50228 1.20571 0.97696 0.90028 1.05827 1.19637 1.00464 0.95604 0.92955 1.20941 0.98069 0.95045 0.97008 1.21105 0.99232 0.96236 0.98204 1.21000 0.99627 0.99812 0.92094 1.21370 0.99934 0.96299 0.98894 1.18248 0.96750 0.92522 0.84823 1.84722 1.49581 1.59844 1.36914 0.91614 0.77048 0.89905 0.89908 0.75041 0.87813 0.87220 0.85670 0.85831 0.85805 0.85545 0.74946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.05 55.50 0.72 -23.00 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.38 29.55 -169.99 -5.02 15.36 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 8 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.55 -13.48 5.29 -10.97 -0.06 -13.53 16 10 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 11 O -0.60 -15.07 15.24 5.55 0.08 -14.98 16 12 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 13 N -0.71 -11.26 5.53 -61.48 -0.34 -11.60 16 14 C 0.51 7.66 7.82 -10.98 -0.09 7.58 16 15 O -0.55 -9.76 16.03 5.56 0.09 -9.67 16 16 C -0.10 -1.17 5.55 -29.03 -0.16 -1.33 16 17 C -0.09 -1.04 4.39 -104.48 -0.46 -1.50 16 18 C -0.09 -1.01 9.68 -39.61 -0.38 -1.40 16 19 C -0.13 -1.26 10.04 -39.56 -0.40 -1.66 16 20 C -0.11 -1.02 10.04 -39.61 -0.40 -1.42 16 21 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 22 C 0.12 1.48 6.68 -39.21 -0.26 1.22 16 23 O -0.50 -5.85 12.64 -19.43 -0.25 -6.10 16 24 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 26 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.41 6.43 7.44 -40.82 -0.30 6.12 16 29 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 30 H 0.11 1.17 7.69 -51.93 -0.40 0.77 16 31 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.39 3.67 9.06 45.56 0.41 4.08 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -32.22 316.15 -5.98 -38.20 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -3.08 Total: 17.34 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.90 Total: 3.22 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.33 Total: -48.13 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.07 Total: -30.75 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.22 -5.98 -38.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325167262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.611 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds