Wall clock time and date at job start Mon Mar 30 2020 23:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86794 * 119.99690 * 2 1 4 4 H 1.48502 * 109.46970 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47741 * 300.00482 * 3 2 1 6 6 H 1.48504 * 109.47232 * 60.00732 * 3 2 1 7 7 C 1.38948 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99826 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00315 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00359 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99435 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00116 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47007 * 180.02562 * 12 10 9 14 14 C 1.34777 * 120.00217 * 180.02562 * 13 12 10 15 15 O 1.21277 * 119.99809 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00333 * 179.97438 * 14 13 12 17 17 C 1.50700 * 109.47149 * 179.97438 * 16 14 13 18 18 C 1.38158 * 120.02768 * 264.99832 * 17 16 14 19 19 C 1.38250 * 120.05410 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11168 * 359.97438 * 19 18 17 21 21 C 1.38125 * 120.05855 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.02445 * 84.95894 * 17 16 14 23 23 O 1.35901 * 120.05828 * 0.03985 * 22 17 16 24 24 H 0.97000 * 120.00063 * 359.97438 * 1 2 3 25 25 H 0.96999 * 120.00059 * 0.02562 * 9 7 2 26 26 H 1.08992 * 109.47328 * 60.00108 * 12 10 9 27 27 H 1.08996 * 109.47063 * 299.99783 * 12 10 9 28 28 H 0.97005 * 119.99920 * 359.97438 * 13 12 10 29 29 H 1.08999 * 109.46777 * 59.99444 * 16 14 13 30 30 H 1.08996 * 109.46853 * 299.99672 * 16 14 13 31 31 H 1.08004 * 119.97750 * 359.97438 * 18 17 16 32 32 H 1.07999 * 119.94133 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.97275 * 180.02562 * 20 19 18 34 34 H 1.07994 * 120.03307 * 179.73079 * 21 20 19 35 35 H 0.96701 * 113.99785 * 269.95941 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8892 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0004 14 6 1.7467 -7.2472 -0.0013 15 8 0.5543 -7.4688 -0.0022 16 6 2.7260 -8.3926 -0.0011 17 6 1.9725 -9.6977 -0.0015 18 6 1.7167 -10.3488 1.1899 19 6 1.0260 -11.5463 1.1900 20 6 0.5889 -12.0953 -0.0015 21 6 0.8412 -11.4478 -1.1952 22 6 1.5345 -10.2458 -1.1981 23 8 1.7849 -9.6073 -2.3714 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3907 -0.0005 26 1 0.6176 -4.9205 -0.8913 27 1 0.6169 -4.9209 0.8886 28 1 3.1496 -5.7992 0.0000 29 1 3.3520 -8.3351 0.8893 30 1 3.3532 -8.3345 -0.8906 31 1 2.0573 -9.9223 2.1218 32 1 0.8274 -12.0539 2.1224 33 1 0.0492 -13.0307 0.0013 34 1 0.5035 -11.8791 -2.1260 35 1 1.0951 -8.9825 -2.6341 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325167262.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:42:19 Heat of formation + Delta-G solvation = -122.640876 kcal Electronic energy + Delta-G solvation = -20385.596192 eV Core-core repulsion = 16961.400738 eV Total energy + Delta-G solvation = -3424.195455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36843 -40.47997 -39.64081 -37.51711 -36.25411 -35.26773 -33.82396 -33.36910 -30.87987 -29.88013 -27.98270 -26.23046 -23.52639 -22.86678 -21.39817 -21.31177 -20.08035 -19.27739 -18.45563 -17.42344 -17.21605 -17.12202 -16.66408 -16.49198 -16.35248 -15.98041 -15.54878 -15.44045 -14.90268 -14.68790 -14.05710 -13.92964 -13.75868 -13.55699 -13.11649 -13.02480 -12.93816 -12.88562 -12.45447 -12.25750 -12.11666 -11.58704 -11.36405 -11.07837 -10.57175 -10.20291 -10.08706 -9.77812 -9.48219 -8.52101 -6.02257 0.30965 0.40674 1.34525 1.42753 1.56617 1.59068 1.90263 2.05746 2.31957 2.73930 3.12774 3.15209 3.39808 3.66691 3.92454 3.94846 4.19468 4.24077 4.33708 4.43184 4.44346 4.55373 4.58704 4.71491 4.96860 5.08615 5.27391 5.38085 5.44670 5.54421 5.58456 5.91141 5.94320 6.45098 6.53478 6.75315 7.02873 7.16575 7.43622 7.93589 8.65046 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.047308 B = 0.002856 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.726762 B = 9801.771152 C = 9814.767844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.336 4.336 8 H 0.086 0.914 9 N -0.560 5.560 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.122 3.878 13 N -0.708 5.708 14 C 0.519 3.481 15 O -0.576 6.576 16 C -0.092 4.092 17 C -0.108 4.108 18 C -0.105 4.105 19 C -0.134 4.134 20 C -0.107 4.107 21 C -0.159 4.159 22 C 0.099 3.901 23 O -0.509 6.509 24 H 0.280 0.720 25 H 0.399 0.601 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.414 0.586 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.139 0.861 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.757 -20.409 0.606 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.465 4.465 8 H 0.104 0.896 9 N -0.196 5.196 10 C 0.220 3.780 11 O -0.512 6.512 12 C -0.006 4.006 13 N -0.362 5.362 14 C 0.307 3.693 15 O -0.456 6.456 16 C -0.132 4.132 17 C -0.109 4.109 18 C -0.123 4.123 19 C -0.151 4.151 20 C -0.125 4.125 21 C -0.177 4.177 22 C 0.055 3.945 23 O -0.321 6.321 24 H 0.089 0.911 25 H 0.233 0.767 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.253 0.747 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 1.078 -20.700 0.601 20.737 hybrid contribution -0.315 1.503 -0.161 1.544 sum 0.762 -19.197 0.440 19.217 Atomic orbital electron populations 1.69684 1.07008 1.29580 1.49397 1.26126 0.96532 1.02688 0.95802 0.84816 0.78145 0.76743 0.78311 1.19421 1.19653 1.19625 1.19768 0.92950 0.83552 1.50277 0.89590 1.41864 1.09591 1.04664 1.63463 1.20457 0.88136 0.85955 0.83488 1.90477 1.15178 1.87552 1.57980 1.20751 0.91762 0.83976 1.04101 1.45757 1.11375 1.04531 1.74520 1.20994 0.89737 0.83625 0.74982 1.90681 1.18242 1.85186 1.51459 1.20562 0.96955 0.88309 1.07327 1.19808 1.01503 0.96068 0.93542 1.21240 0.98230 0.95646 0.97158 1.21478 0.98354 0.95866 0.99443 1.21383 0.99000 1.00565 0.91567 1.21637 0.99879 0.96069 1.00119 1.18540 0.97683 0.93362 0.84960 1.84693 1.50164 1.60155 1.37040 0.91069 0.76728 0.88855 0.88969 0.74746 0.85441 0.86429 0.84342 0.83299 0.83086 0.84343 0.74236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.49 29.55 68.60 2.03 43.51 16 4 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.34 -18.38 9.68 84.04 0.81 -17.57 16 8 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 9 N -0.56 -27.84 5.29 -306.99 -1.62 -29.47 16 10 C 0.43 19.61 7.85 87.66 0.69 20.30 16 11 O -0.62 -31.74 15.24 -3.07 -0.05 -31.78 16 12 C 0.12 4.31 6.15 85.63 0.53 4.84 16 13 N -0.71 -21.93 5.53 -466.81 -2.58 -24.51 16 14 C 0.52 14.94 7.82 87.66 0.69 15.62 16 15 O -0.58 -20.07 16.03 -3.02 -0.05 -20.12 16 16 C -0.09 -2.00 5.55 29.10 0.16 -1.84 16 17 C -0.11 -2.51 4.39 -19.77 -0.09 -2.60 16 18 C -0.10 -2.11 9.68 22.25 0.22 -1.90 16 19 C -0.13 -2.29 10.04 22.28 0.22 -2.06 16 20 C -0.11 -1.81 10.04 22.25 0.22 -1.59 16 21 C -0.16 -3.20 9.99 22.37 0.22 -2.97 16 22 C 0.10 2.34 6.68 22.51 0.15 2.50 16 23 O -0.51 -11.75 12.64 -92.44 -1.17 -12.92 16 24 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 26 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 27 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 28 H 0.41 12.62 7.44 -92.70 -0.69 11.93 16 29 H 0.13 2.13 8.05 -2.39 -0.02 2.11 16 30 H 0.12 2.37 7.69 -2.39 -0.02 2.35 16 31 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 35 H 0.40 7.49 9.06 -74.06 -0.67 6.81 16 Total: -1.00 -68.29 316.15 0.20 -68.09 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: -0.93 Total: 42.70 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 4.29 Total: 12.62 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -3.92 Total: -102.10 kcal Atomic # 8 Polarization: -63.56 SS G_CDS: -1.26 Total: -64.82 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -68.29 0.20 -68.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325167262.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.556 kcal (2) G-P(sol) polarization free energy of solvation -68.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds