Wall clock time and date at job start Tue Mar 31 2020 01:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38357 * 119.40771 * 2 1 4 4 C 1.38335 * 119.45858 * 180.02562 * 3 2 1 5 5 C 1.39986 * 118.34758 * 359.97438 * 4 3 2 6 6 C 1.47532 * 120.59309 * 180.02562 * 5 4 3 7 7 O 1.21588 * 119.99500 * 155.49452 * 6 5 4 8 8 N 1.34772 * 120.00364 * 335.49274 * 6 5 4 9 9 C 1.47579 * 134.49416 * 174.59698 * 8 6 5 10 10 C 1.53953 * 86.11527 * 155.36034 * 9 8 6 11 11 O 1.42901 * 113.74161 * 269.15473 * 10 9 8 12 12 C 1.50699 * 113.73923 * 137.95347 * 10 9 8 13 13 H 1.08002 * 119.99815 * 1.92689 * 12 10 9 14 14 C 1.37875 * 120.00152 * 181.92105 * 12 10 9 15 15 N 1.31518 * 119.99756 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00151 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.46793 * 270.00129 * 16 14 12 18 18 H 1.48493 * 109.47270 * 30.00428 * 16 14 12 19 19 H 1.48506 * 109.46984 * 150.00510 * 16 14 12 20 20 C 1.47820 * 134.45451 * 354.46512 * 8 6 5 21 21 C 1.40272 * 118.80900 * 0.27866 * 5 4 3 22 22 O 1.35430 * 119.79968 * 179.72813 * 21 5 4 23 23 N 1.31880 * 119.40827 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47119 * 89.99662 * 1 2 3 25 25 H 1.08993 * 109.47234 * 210.00355 * 1 2 3 26 26 H 1.09005 * 109.46790 * 330.00140 * 1 2 3 27 27 H 1.08007 * 120.27407 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.82549 * 180.02562 * 4 3 2 29 29 H 1.09002 * 113.76602 * 41.06424 * 9 8 6 30 30 H 1.08998 * 113.87160 * 269.67023 * 9 8 6 31 31 H 0.96698 * 114.00003 * 178.08022 * 11 10 9 32 32 H 0.96998 * 119.99861 * 180.02562 * 15 14 12 33 33 H 1.09000 * 113.76310 * 90.37970 * 20 8 6 34 34 H 1.08992 * 113.83578 * 318.92123 * 20 8 6 35 35 H 0.96697 * 114.00196 * 90.00254 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2804 -1.0621 0.4363 8 7 6.4238 0.9540 -0.4847 9 6 7.8621 1.2784 -0.5486 10 6 7.5017 2.1639 -1.7553 11 8 7.5788 1.4851 -3.0105 12 6 8.2076 3.4953 -1.7631 13 1 8.9159 3.7356 -0.9840 14 6 7.9494 4.4067 -2.7650 15 7 7.0866 4.1142 -3.7136 16 14 8.8249 6.0568 -2.7751 17 1 8.0249 7.0462 -2.0094 18 1 10.1632 5.9109 -2.1485 19 1 8.9824 6.5250 -4.1756 20 6 6.0802 2.2195 -1.1670 21 6 3.4758 -1.2041 -0.0059 22 8 4.0992 -2.4063 -0.0116 23 7 2.1546 -1.1489 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.6411 2.1376 0.0004 28 1 4.1223 2.1345 -0.0001 29 1 8.4937 0.4268 -0.8017 30 1 8.2270 1.8374 0.3131 31 1 7.3249 2.0295 -3.7682 32 1 6.9052 4.7552 -4.4186 33 1 5.9187 3.0556 -0.4866 34 1 5.2918 2.1178 -1.9127 35 1 4.2803 -2.7596 0.8701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326204371.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:30 Heat of formation + Delta-G solvation = -50.467052 kcal Electronic energy + Delta-G solvation = -21588.731196 eV Core-core repulsion = 18167.665433 eV Total energy + Delta-G solvation = -3421.065763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.72283 -39.23786 -37.46758 -36.82877 -34.04780 -33.02372 -32.26754 -31.60431 -29.02999 -27.53695 -25.49575 -25.31952 -23.16207 -22.78504 -20.33486 -18.91628 -18.37495 -17.53356 -16.83624 -16.58839 -15.72411 -15.56313 -15.12599 -14.60511 -14.37929 -14.20646 -14.03569 -13.53815 -13.17597 -12.81388 -12.51528 -12.39120 -12.32294 -12.08296 -11.97023 -11.61484 -11.53231 -11.16663 -11.07255 -10.57828 -10.35022 -9.94028 -9.86540 -9.49487 -9.21891 -8.83003 -8.78238 -8.46218 -7.89804 -6.44023 -4.54983 0.69155 1.14013 3.09351 3.10689 3.19704 3.22786 3.36711 3.61193 3.86677 4.14401 4.49290 4.67337 4.77625 4.84133 4.94259 5.24151 5.32824 5.41616 5.51010 5.53982 5.79668 5.85795 5.98037 6.01687 6.11470 6.32079 6.36628 6.41563 6.56948 6.62076 7.02834 7.57935 7.59828 7.76497 7.86464 8.36298 8.48748 8.65276 9.16646 9.38510 10.62677 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.004907 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.856045 B = 5704.806046 C = 6460.233363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.164 3.836 3 C -0.191 4.191 4 C -0.025 4.025 5 C -0.193 4.193 6 C 0.579 3.421 7 O -0.550 6.550 8 N -0.627 5.627 9 C 0.114 3.886 10 C 0.240 3.760 11 O -0.571 6.571 12 C -0.539 4.539 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.907 3.093 17 H -0.277 1.277 18 H -0.270 1.270 19 H -0.283 1.283 20 C 0.073 3.927 21 C 0.367 3.633 22 O -0.465 6.465 23 N -0.511 5.511 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.143 0.857 28 H 0.149 0.851 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.273 0.727 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 -1.419 6.880 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.211 4.211 4 C -0.051 4.051 5 C -0.199 4.199 6 C 0.368 3.632 7 O -0.430 6.430 8 N -0.359 5.359 9 C -0.008 4.008 10 C 0.198 3.802 11 O -0.383 6.383 12 C -0.577 4.577 13 H 0.090 0.910 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.734 3.266 17 H -0.203 1.203 18 H -0.195 1.195 19 H -0.209 1.209 20 C -0.049 4.049 21 C 0.187 3.813 22 O -0.272 6.272 23 N -0.232 5.232 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.246 0.754 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -10.829 -3.273 6.781 13.190 hybrid contribution 0.619 2.096 0.000 2.186 sum -10.210 -1.177 6.780 12.313 Atomic orbital electron populations 1.20784 0.88339 1.03651 1.03477 1.21201 0.96897 0.87315 0.92028 1.21903 0.94522 0.99466 1.05242 1.22027 0.94450 0.97820 0.90794 1.21193 0.95392 0.94238 1.09125 1.17406 0.85321 0.82575 0.77932 1.90704 1.71676 1.31792 1.48852 1.50108 1.10081 1.19119 1.56638 1.23484 0.81123 0.97929 0.98260 1.19833 0.88978 0.89292 0.82082 1.86082 1.90851 1.43928 1.17399 1.21499 1.25862 0.98907 1.11405 0.90968 1.25072 0.94128 0.99172 0.94613 1.69407 1.33745 1.37003 1.13571 0.86336 0.80119 0.82499 0.77602 1.20313 1.19508 1.20883 1.24456 1.03518 0.82540 0.94432 1.19080 0.86037 0.85039 0.91148 1.84670 1.76534 1.32015 1.34018 1.67079 1.09331 1.30424 1.16341 0.89946 0.90293 0.90283 0.83890 0.83312 0.90873 0.89355 0.75354 0.91634 0.89822 0.91122 0.73527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.16 36.01 0.37 -0.53 16 2 C 0.16 2.10 6.78 -82.53 -0.56 1.54 16 3 C -0.19 -2.35 9.71 -39.50 -0.38 -2.73 16 4 C -0.03 -0.38 8.95 -38.89 -0.35 -0.72 16 5 C -0.19 -3.46 5.84 -104.69 -0.61 -4.07 16 6 C 0.58 12.16 7.77 -12.47 -0.10 12.07 16 7 O -0.55 -12.65 16.33 -14.76 -0.24 -12.89 16 8 N -0.63 -13.20 3.58 -179.34 -0.64 -13.84 16 9 C 0.11 2.44 8.23 -2.96 -0.02 2.41 16 10 C 0.24 5.63 1.40 -90.84 -0.13 5.50 16 11 O -0.57 -14.67 13.48 -35.23 -0.48 -15.15 16 12 C -0.54 -13.10 8.61 -34.44 -0.30 -13.39 16 13 H 0.07 1.71 7.81 -52.49 -0.41 1.29 16 14 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 15 N -0.90 -22.17 11.20 55.43 0.62 -21.55 16 16 Si 0.91 18.91 29.54 -169.99 -5.02 13.89 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 20 C 0.07 1.51 5.71 -2.84 -0.02 1.49 16 21 C 0.37 6.37 7.74 -16.61 -0.13 6.25 16 22 O -0.46 -7.96 11.96 -38.02 -0.45 -8.42 16 23 N -0.51 -8.03 10.28 -9.21 -0.09 -8.13 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 27 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.15 2.12 5.65 -52.49 -0.30 1.83 16 29 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 30 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 31 H 0.39 10.10 6.60 45.56 0.30 10.40 16 32 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 33 H 0.08 1.59 7.72 -51.93 -0.40 1.18 16 34 H 0.07 1.49 7.87 -51.93 -0.41 1.08 16 35 H 0.41 5.17 9.06 45.56 0.41 5.58 16 LS Contribution 305.65 15.07 4.61 4.61 Total: -1.00 -30.30 305.65 -6.49 -36.79 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -2.47 Total: 15.21 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -2.32 Total: 9.47 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.12 Total: -43.52 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.17 Total: -36.45 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.30 -6.49 -36.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326204371.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.674 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds