Wall clock time and date at job start Mon Mar 30 2020 23:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48504 * 109.46737 * 275.41039 * 3 2 1 5 5 H 1.48500 * 109.47347 * 35.41523 * 3 2 1 6 6 H 1.48497 * 109.46750 * 155.41882 * 3 2 1 7 7 C 1.39932 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00345 * 341.73369 * 7 2 1 9 9 C 1.41443 * 120.00067 * 161.72710 * 7 2 1 10 10 C 1.40780 * 120.17484 * 330.18219 * 9 7 2 11 11 C 1.37718 * 120.03652 * 179.97438 * 10 9 7 12 12 C 1.38364 * 120.41180 * 359.78328 * 11 10 9 13 13 C 1.39880 * 120.35936 * 0.47048 * 12 11 10 14 14 C 1.47891 * 120.02701 * 179.78437 * 13 12 11 15 15 O 1.21546 * 119.99730 * 179.72671 * 14 13 12 16 16 N 1.34778 * 119.99520 * 359.72422 * 14 13 12 17 17 C 1.46499 * 119.99329 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46784 * 180.02562 * 17 16 14 19 19 H 1.08999 * 109.47112 * 60.00271 * 18 17 16 20 20 O 1.42898 * 109.47403 * 299.99931 * 18 17 16 21 21 C 1.50702 * 109.46881 * 180.02562 * 18 17 16 22 22 N 1.34777 * 120.00124 * 294.99998 * 21 18 17 23 23 O 1.21283 * 119.99778 * 115.00277 * 21 18 17 24 24 C 1.39035 * 119.94927 * 359.51255 * 13 12 11 25 25 H 0.97003 * 119.99383 * 359.97438 * 1 2 3 26 26 H 1.07997 * 119.98340 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.78927 * 180.02562 * 11 10 9 28 28 H 1.08002 * 119.81903 * 180.23556 * 12 11 10 29 29 H 0.96994 * 120.00310 * 0.02562 * 16 14 13 30 30 H 1.08997 * 109.47785 * 300.00051 * 17 16 14 31 31 H 1.08998 * 109.47584 * 60.00504 * 17 16 14 32 32 H 0.96699 * 114.00397 * 300.00099 * 20 18 17 33 33 H 0.96996 * 120.00066 * 359.97438 * 22 21 18 34 34 H 0.97005 * 119.99649 * 180.02562 * 22 21 18 35 35 H 1.07995 * 120.20168 * 180.23068 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3939 5 1 1.5017 2.6170 0.8113 6 1 3.5924 1.4097 0.5824 7 6 2.0079 -1.2119 -0.0005 8 1 1.5088 -2.1238 0.2922 9 6 3.3689 -1.2427 -0.3846 10 6 3.8624 -0.3100 -1.3165 11 6 5.1881 -0.3423 -1.6881 12 6 6.0443 -1.2851 -1.1474 13 6 5.5708 -2.2232 -0.2241 14 6 6.4913 -3.2307 0.3456 15 8 6.0804 -4.0424 1.1516 16 7 7.7859 -3.2488 -0.0290 17 6 8.6978 -4.2466 0.5358 18 6 10.0969 -4.0487 -0.0512 19 1 10.4555 -3.0489 0.1935 20 8 10.0439 -4.2016 -1.4710 21 6 11.0349 -5.0755 0.5293 22 7 11.3219 -5.0580 1.8461 23 8 11.5316 -5.9175 -0.1885 24 6 4.2352 -2.2040 0.1620 25 1 -0.4849 0.8401 0.0004 26 1 3.2012 0.4317 -1.7397 27 1 5.5626 0.3754 -2.4030 28 1 7.0831 -1.2993 -1.4427 29 1 8.1138 -2.6009 -0.6720 30 1 8.7388 -4.1298 1.6187 31 1 8.3391 -5.2464 0.2915 32 1 9.7326 -5.0697 -1.7618 33 1 10.9250 -4.3843 2.4200 34 1 11.9260 -5.7187 2.2196 35 1 3.8661 -2.9239 0.8773 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326972474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:48:57 Heat of formation + Delta-G solvation = -141.769318 kcal Electronic energy + Delta-G solvation = -20597.442463 eV Core-core repulsion = 17172.417537 eV Total energy + Delta-G solvation = -3425.024926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 278.110 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33576 -40.67454 -39.06880 -37.74159 -35.67337 -35.44058 -34.72493 -32.60653 -31.80305 -30.31436 -27.15956 -25.80974 -23.97951 -22.45095 -22.07856 -21.44643 -19.72297 -19.17993 -18.20077 -18.14546 -17.43395 -17.16718 -16.80345 -16.49527 -16.32676 -15.89833 -15.46892 -15.21785 -14.97607 -14.85101 -14.54741 -14.39428 -13.86476 -13.60494 -13.30308 -12.99560 -12.83028 -12.66407 -12.30049 -11.94226 -11.74537 -11.55758 -11.25172 -11.02229 -10.75604 -10.71754 -10.24886 -9.61365 -9.54680 -8.90648 -6.54658 0.18528 0.75885 1.26915 1.34664 1.42944 1.49783 1.94749 2.03415 2.13446 2.52749 2.66258 3.26614 3.46513 3.48748 3.83593 3.91560 3.99716 4.28156 4.43609 4.50325 4.60448 4.66158 4.90195 4.93628 5.16780 5.30798 5.43652 5.66063 5.73386 5.79780 5.86101 6.11458 6.25329 6.31155 6.50050 6.55319 6.66994 6.75290 7.18849 7.20681 8.18507 Molecular weight = 278.11amu Principal moments of inertia in cm(-1) A = 0.040104 B = 0.003427 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.013793 B = 8167.540869 C = 8444.274083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.044 3.956 3 Si 0.969 3.031 4 H -0.248 1.248 5 H -0.278 1.278 6 H -0.249 1.249 7 C -0.490 4.490 8 H 0.049 0.951 9 C 0.065 3.935 10 C -0.225 4.225 11 C -0.083 4.083 12 C -0.180 4.180 13 C -0.114 4.114 14 C 0.565 3.435 15 O -0.583 6.583 16 N -0.703 5.703 17 C 0.094 3.906 18 C 0.093 3.907 19 H 0.162 0.838 20 O -0.545 6.545 21 C 0.495 3.505 22 N -0.829 5.829 23 O -0.581 6.581 24 C -0.166 4.166 25 H 0.295 0.705 26 H 0.105 0.895 27 H 0.147 0.853 28 H 0.151 0.849 29 H 0.418 0.582 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.393 0.607 33 H 0.420 0.580 34 H 0.410 0.590 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.509 -0.524 1.179 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.170 4.170 3 Si 0.791 3.209 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.172 1.172 7 C -0.520 4.520 8 H 0.067 0.933 9 C 0.063 3.937 10 C -0.244 4.244 11 C -0.101 4.101 12 C -0.199 4.199 13 C -0.117 4.117 14 C 0.354 3.646 15 O -0.465 6.465 16 N -0.357 5.357 17 C -0.031 4.031 18 C 0.030 3.970 19 H 0.180 0.820 20 O -0.351 6.351 21 C 0.279 3.721 22 N -0.395 5.395 23 O -0.460 6.460 24 C -0.187 4.187 25 H 0.105 0.895 26 H 0.123 0.877 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.258 0.742 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.243 0.757 33 H 0.251 0.749 34 H 0.242 0.758 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 21.400 -0.876 1.167 21.450 hybrid contribution -0.744 -0.155 0.468 0.893 sum 20.656 -1.032 1.636 20.747 Atomic orbital electron populations 1.69735 1.09396 1.31634 1.36969 1.26925 0.95414 1.04465 0.90201 0.85450 0.79648 0.75852 0.79999 1.17260 1.20488 1.17233 1.19471 0.94611 0.95699 1.42172 0.93266 1.17766 0.92462 0.92398 0.91082 1.21401 0.97478 1.03440 1.02110 1.21052 0.92282 0.98161 0.98635 1.21027 1.00341 0.97589 1.00952 1.19682 0.93364 0.97917 1.00733 1.18522 0.82567 0.83211 0.80282 1.90703 1.77663 1.41916 1.36180 1.45521 1.07728 1.35640 1.46803 1.21992 0.88286 0.92799 0.99988 1.22140 0.91623 1.00682 0.82529 0.82041 1.86576 1.89454 1.40544 1.18547 1.21474 0.82054 0.85223 0.83363 1.43800 1.50448 1.36870 1.08373 1.90778 1.54632 1.39853 1.60750 1.21203 0.92892 1.02238 1.02341 0.89474 0.87707 0.83569 0.83194 0.74231 0.88608 0.91732 0.75701 0.74853 0.75755 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.84 13.93 21.82 0.30 -46.54 16 2 C 0.04 2.36 5.40 85.25 0.46 2.82 16 3 Si 0.97 41.05 24.52 68.60 1.68 42.74 16 4 H -0.25 -9.57 6.71 99.48 0.67 -8.90 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 6 H -0.25 -10.60 6.86 99.48 0.68 -9.92 16 7 C -0.49 -27.92 9.57 23.47 0.22 -27.70 16 8 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 9 C 0.07 3.32 5.10 -21.32 -0.11 3.21 16 10 C -0.22 -9.86 7.17 22.77 0.16 -9.69 16 11 C -0.08 -2.90 10.01 22.18 0.22 -2.68 16 12 C -0.18 -5.77 9.55 22.70 0.22 -5.56 16 13 C -0.11 -4.45 5.87 -20.13 -0.12 -4.57 16 14 C 0.56 19.57 7.77 86.80 0.67 20.25 16 15 O -0.58 -24.59 16.33 -3.86 -0.06 -24.66 16 16 N -0.70 -15.77 5.40 -465.93 -2.52 -18.29 16 17 C 0.09 1.59 5.29 86.38 0.46 2.05 16 18 C 0.09 1.19 3.47 29.85 0.10 1.30 16 19 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 20 O -0.55 -9.19 12.74 -129.98 -1.66 -10.84 16 21 C 0.50 7.59 7.44 87.66 0.65 8.24 16 22 N -0.83 -6.20 8.84 -173.53 -1.53 -7.73 16 23 O -0.58 -14.49 17.16 15.96 0.27 -14.22 16 24 C -0.17 -8.03 9.34 23.01 0.21 -7.82 16 25 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 26 H 0.11 4.54 4.72 -2.91 -0.01 4.52 16 27 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.15 3.30 6.38 -2.91 -0.02 3.28 16 29 H 0.42 7.46 6.36 -92.71 -0.59 6.87 16 30 H 0.10 1.40 7.92 -2.39 -0.02 1.38 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.39 5.87 8.79 -74.06 -0.65 5.22 16 33 H 0.42 0.77 8.61 -92.71 -0.80 -0.02 16 34 H 0.41 2.53 8.93 -92.70 -0.83 1.71 16 35 H 0.09 4.67 7.64 -2.91 -0.02 4.65 16 Total: -1.00 -76.32 305.60 -2.08 -78.41 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -1.74 Total: 21.30 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 3.16 Total: -20.16 kcal Atomic # 7 Polarization: -68.81 SS G_CDS: -3.74 Total: -72.56 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -1.44 Total: -49.72 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.68 Total: 42.74 kcal Total: -76.32 -2.08 -78.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326972474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.362 kcal (2) G-P(sol) polarization free energy of solvation -76.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds